mRNA_L-elsbetiae_contig884.17866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.830e-64 Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = -2
Query: 355 NRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSAS--QDY 708
++SSKAGLQFPVARIGR+LK+GK+ATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK VGKAK+SAS QDY
Sbjct: 66 SKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY 185
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 205 bits (522), Expect = 2.900e-64 Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = -2
Query: 355 NRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVG---KAKSSASQDY 708
++SSKAGLQFPVARIGR+LK+GK+ATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK VG KA +SASQDY
Sbjct: 15 SKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGGKAKASASASQDY 135
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: A0A7S2CIK1_9STRA (Histone H2A n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIK1_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.730e-60 Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = -2
Query: 355 NRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAK---SSASQDY 708
++SSKAGLQFPVAR+GR+LKKGKFATRVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI PRHIQLAVRNDEELNKLLG VTI+SGGVLPNIHAVLLPK K GKAK SASQDY
Sbjct: 18 SKSSKAGLQFPVARVGRYLKKGKFATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRITPRHIQLAVRNDEELNKLLGNVTISSGGVLPNIHAVLLPK--KTGKAKLAKGSASQDY 136
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: W7TMB5_9STRA (Histone H2A n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMB5_9STRA) HSP 1 Score: 194 bits (494), Expect = 5.120e-60 Identity = 99/119 (83.19%), Postives = 108/119 (90.76%), Query Frame = -2
Query: 355 LNRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSASQDY 711
++RSSKAGLQFPV RI RFLKKG++A RVG+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH+VLLPK+K K SASQDY
Sbjct: 17 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: A0A7S3K2Q9_9STRA (Histone H2A n=4 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Q9_9STRA) HSP 1 Score: 192 bits (487), Expect = 6.490e-59 Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = -2
Query: 355 RSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSASQDY 705
+S+KAGLQFPV RIGRFLK+GK+ATRVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPK K K+S SQ++
Sbjct: 22 KSAKAGLQFPVGRIGRFLKQGKYATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGSVTIASGGVLPNIHAVLLPKKSKSKTTKASGSQEF 138
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 189 bits (481), Expect = 3.150e-58 Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = -2
Query: 400 RSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 705
RS+KAGLQFPV R+GRFLKKGK+A+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 16 RSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: D8TQ56_VOLCA (Histone H2A (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQ56_VOLCA) HSP 1 Score: 190 bits (483), Expect = 7.130e-58 Identity = 98/125 (78.40%), Postives = 111/125 (88.80%), Query Frame = -2
Query: 364 TANFQIF--LNRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSAS 732
TA+F I ++RS+KAGLQFPV RI R+LKKGK+A R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIIPRHIQLA+RNDEEL KLLG+VTIA+GGVLPNIHAVLLPK K GKA+ ++
Sbjct: 43 TASFAILSKISRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIIPRHIQLAIRNDEELGKLLGDVTIAAGGVLPNIHAVLLPKKSKTGKAEDGSA 167
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: A8HWM8_CHLRE (Histone H2A n=17 Tax=Chlamydomonadales TaxID=3042 RepID=A8HWM8_CHLRE) HSP 1 Score: 188 bits (478), Expect = 1.240e-57 Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = -2
Query: 364 LNRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSAS 711
++RS+KAGLQFPV RI R+LKKGK+A R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RI+PRHIQLA+RNDEEL KLLGEVTIASGGVLPNIHAVLLPK K GKA+ ++
Sbjct: 15 VSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKNKGGKAEDGSA 130
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.790e-57 Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = -2
Query: 400 RSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 705
RS+KAGLQFPV R+GRFLKKGK+A+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 61 RSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 162
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 188 bits (477), Expect = 1.870e-57 Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = -2
Query: 355 LNRSSKAGLQFPVARIGRFLKKGKFATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKNKKVGKAKSSASQDY 711
++RS+KAGLQFPV R+ R+LKKGK+ATR+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPK A S SQ++
Sbjct: 16 VSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKKGASGSVSQEF 134 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig884.17866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig884.17866.1 >prot_L-elsbetiae_contig884.17866.1 ID=prot_L-elsbetiae_contig884.17866.1|Name=mRNA_L-elsbetiae_contig884.17866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp MNAIGWSITLMLGRERCSVVLGSRRLGLANLLVLGQQHGVDVGQDSAGCDback to top mRNA from alignment at L-elsbetiae_contig884:20107..20845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig884.17866.1 ID=mRNA_L-elsbetiae_contig884.17866.1|Name=mRNA_L-elsbetiae_contig884.17866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=739bp|location=Sequence derived from alignment at L-elsbetiae_contig884:20107..20845+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig884:20107..20845+ >mRNA_L-elsbetiae_contig884.17866.1 ID=mRNA_L-elsbetiae_contig884.17866.1|Name=mRNA_L-elsbetiae_contig884.17866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig884:20107..20845+ (Laminarionema elsbetiae ELsaHSoW15)back to top |