mRNA_L-elsbetiae_contig8838.17864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8838.17864.1 vs. uniprot
Match: A0A6H5L0C5_9PHAE (VASt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C5_9PHAE) HSP 1 Score: 1026 bits (2653), Expect = 0.000e+0 Identity = 745/1445 (51.56%), Postives = 871/1445 (60.28%), Query Frame = 1
Query: 1 ALIRAAKHAGKG-------WGQTT-TKRPVWAPSLVQEGWAGTVSAVNSWGKQHVGWARCIDQNIAKTLTEFSKKHKGHVSRLWAEAQDLVNDLEVVSGQYYKARERYEHSCIEASRLLDERNKARQVAAAEKAXXXXXXXXXXXXXTQTETSGGDKTALHGSMLLSVSKMLGEGMAMAEKMLEK-AAREPSLAELEQKVPEQLRTVDVAETEYIASIMALNGYNTEFQPEMEKKLKEFSLLEECRITYIKEVLLRLDQAGKGMLACLLGPGGTLEALSLALSRIDAVKDASSQLLYVRNCAGMRPLQTTREAVDAPLSSRAEKGEAVDGGITRVVGAPEEQLVAITQGREATGLGVLELSEDGCENIFFAGRDGANEATRVLQEICCCLGEVVSAEENHTRELLRLLQRHGYGSRVSQSTTAGGRGSIGMMEEVMANMSKPSSSACAGAIAGEGQTLTQGWDCSAVGKALVAVEAHTGLAHALADGSCATAIQAHNEAKASVKLAIKTFSTASKHLVSCRSAHAKAVSRCDKLTREAQEKEESLAKARVDLAAELQASEGA-----STIPVGAPTTPSG-AAATAASLSVFESLGLGQQASAVG-------RPIVTAALFHSGYLIFSQAGSRVKALEVKVATLVEERDAAKQNVRDAIHAMKTALEELRLEIKDSLLTLFAKDSSRHTGLGELLQGVLSTFLETARELAKEQTRADEANMTERIDGRKDVQELVERNAARVR--QRGAVMFMAYHSEVLQKERDMLRRNRLSSPRSAEMESLQEEES--ESGGMRRAGGGSHRFSVMAEAALAQARTCSSIISAKQQKRQILARQEEAKVVGRERG--TSEACGPSLALMS-SVSLTDGEGN--SFPR-----RDRRRHRQSSRPLEVTGGCLSDSEVVMCDNSTASRHGGSLHGIIRRGSXXXXXXXXP-----------------------KSYHRHNSSISLR----NKSHPRQDRPGRPQEINDVRRDAPAKQTVVMSVGDAVHGTATARVTSVANAPASPVVQGSGDAPVVVSDVEAIMPASGSKLG-AQGELAEMPDKRMPAELSGD--EGVTLAAETPL----------PAVKSAGAGGEVKCGSHRNLEKQASPAQSSTAPAV--AVATAGEGHTLAAGLPSEAKP---------------ADLEAKDVRAGSAVDSHPATPTNQALGHDQVTNSVLVGIGGKVARTEDQ------------APSEEPAPT--------EERGRPGSPIGFSSLEYLRDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNRIAIGESLSSSFEGRPSLRHLENRLRDQDDFSSDGEEADGISSSDDEPASGFDLPLSARKPVSTPTRVEQARASAED-FNVLGSFGLPEGALQDKVIESYSCGLGN----VHGRLYVTSKYALFSGWRNTKV 3981
ALI+AAK A KG WG T T PVWAPSLVQEGWAG V+++NSWGKQHVGWARC++QNIAKTLTEFSKKH+GHV+RL EAQDLV DLE V G+YY+A+ YE +CI+ASRLLDER++ARQVAA E A ++T+ + A GSML SVSKMLGEGMA+AEKMLEK AA E SL ELE KVPEQL VDVAE+EYIASIMALNGYNTEFQPEME KLK+F LLEECRI YIKEVLLRLDQA KGML CL+GPGGTLEALS+AL+RID + DA +QL YVR AGM PL E + S E E + R V APEE + Q REATGL VL+L EDG E +F RD ANEA R++QEICC LGE+VS EENHTRE+LRLL+R GYGSRV G RG++ +ME+VMANMSKPSS ACAG IAGEG TL QGWD SAVGKALV+ EAHTGLAH+LADGSC AIQAHNEAKASVK AIKTFS A K L + +S HAKAVS+CDKLTRE EKEESLAKARVDL AELQAS G+ ++P T P G ++ T SL +F G+ +SA G P V +L + AG RVKALEVKVA L EERDAAKQNV+DAIH K ALEELRL++KD+ + L +DSSR L ELL GVLS +LET + L EQTRADE T+ IDG+KDVQELVERNA RV+ VMFMAYHSEVLQKERDMLR++RLSSPRSAE L+ E S + G+RRAGGGSHRF+ MAEAALAQA AKQQ+RQI+ARQE GRE G TS G + A + S SLTDGE S R RD RRHR+ R E C S+SEVV+CD++ ASRHGGSLHG +RR XXXXXXXX KSY RH+S+ISLR N + PRQ QE DV A +G GT RV S + P + V + E + G KL +GE+ ++P+ A +SGD G T A +P+ P+ KS AGG +E + AP V AVAT + H + SE +P AD+ V AG + S P G DQV + +V+ T P+EE AP+ EERGR GSPIG SSL + RD + ++A E S E RPSLRHL+NRLR+QDDFS + S + + A A D NVL SF +P+ LQDKVIES+SCGL + +HGRLYVT KYALFSGWRNTKV
Sbjct: 47 ALIKAAKRASKGARPGGNAWGHATATAPPVWAPSLVQEGWAGIVASINSWGKQHVGWARCVEQNIAKTLTEFSKKHRGHVARLCTEAQDLVRDLEAVGGEYYRAKGAYEEACIQASRLLDERDRARQVAAEEAAHMQPPA-------SRTKPA----EAAGGSMLSSVSKMLGEGMAIAEKMLEKVAAGELSLVELEAKVPEQLHVVDVAESEYIASIMALNGYNTEFQPEMEGKLKQFQLLEECRIAYIKEVLLRLDQASKGMLTCLIGPGGTLEALSIALTRIDPLSDAEAQLSYVRENAGMPPLSPMSEFSNTSSSMGDENREGMPDRGKRAVRAPEE----VAQAREATGLAVLKLPEDGVEKMFHGARDEANEAVRMVQEICCFLGELVSVEENHTREVLRLLERQGYGSRV------GARGTMSLMEDVMANMSKPSSLACAGVIAGEGHTLKQGWDSSAVGKALVSAEAHTGLAHSLADGSCTAAIQAHNEAKASVKRAIKTFSAAWKQLSTSKSTHAKAVSKCDKLTREVHEKEESLAKARVDLTAELQASGGSCIGQEQSLPPDNSTGPRGHSSGTGPSLDLF-----GEDSSAKGIGGVRRDGPWVLESLG-----LQQHAGGRVKALEVKVAALAEERDAAKQNVQDAIHGTKAALEELRLKVKDTTIGLLTEDSSRQARLSELLHGVLSVYLETTKVLVAEQTRADEGKQTQAIDGQKDVQELVERNAHRVQVPTGHGVMFMAYHSEVLQKERDMLRKHRLSSPRSAERHGLEGETSGNNASGVRRAGGGSHRFTAMAEAALAQAH-------AKQQRRQIIARQEGT---GRENGGATSGVGGWNAAARAFSASLTDGEEGPISLSRQRQVLRDHRRHRRKIRAPENGESCFSESEVVVCDDN-ASRHGGSLHGNLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKSYSRHSSAISLRAHSKNANSPRQG-----QETKDVGNAPVAVSVSTSGLGSPRVGTGD-RVLS--SPPVEDAAHSGSASDVPRAKAERAPESGGGKLDPTEGEVTDVPNGNNSAIVSGDGRSGGTPAPPSPVEASVDPTETPPSAKSGVAGGV--------MEPETIYIHGQKAPGVTAAVATTADLHPIVK-AESETEPPPGAPVKEAKLGILSADVAKAAVLAGQEIQSEPDGVVLTG-GLDQVARIERSRVEAEVSPTXXXXXXXXXXXXXXVVPTEESAPSCRATAIAGEERGRLGSPIGSSSLVHPRDAS------------------------------EEQMAAKEESPRS-ERRPSLRHLKNRLREQDDFSXXXXXXXXXXXXXXXXXXXXXXXXXFYRESSATAGISASTAQASDELNVLDSFDIPKEDLQDKVIESFSCGLYSGGLPLHGRLYVTGKYALFSGWRNTKV 1400
BLAST of mRNA_L-elsbetiae_contig8838.17864.1 vs. uniprot
Match: A0A4D9CXX0_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXX0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.540e-8 Identity = 125/515 (24.27%), Postives = 200/515 (38.83%), Query Frame = 1
Query: 70 APSLVQEGWAGTVSAVNSWGKQHVGWARCIDQNIAKTLTEFSKKHKGHVSRLWAEAQDLVNDLEVVSGQYYKARERYEHSCIEASRLLDERNK---------------ARQVAAAEKAXXXXXXXXXXXXXTQTET-SGGDKTALHGSMLLSVSKMLGEGMAMAEKMLEKAAREPSLAELEQKVPEQLRTVDVAETEYIASIMALNGYNTEFQPEMEKKLKEFSLLEECRITYIKEVLLRLDQAGKGMLACLLGPGGTLEALSLALSRIDAVKDASSQLLYVRNCAGMRPLQTTREAVDAPLSSRAEKGEAVDGGITRVVGAPEEQLVAITQGREATGLGVLELSEDGC---ENIFFAGRDGANEATRVLQEICCCLGEVVSAEENHTRELLRLLQRHGYGSRVSQSTTAGGRGSIGMMEEVMANMSKPSS-SACAGAIAGEGQTLTQGWDCSAVGKALVAVEAHTGLAHALADGSCATAIQAHNEAKASVKLAIKTFSTASKHLVSCRSAHAKA 1554
APS+V AG +++ + G+QHVG A + Q++ K+L + + + + E LV DLE + K R++++ +C EA +L + A VA A XXXXXXXXXXXT + SG D + S ++ S+ L+ + E L + E EY S + G F+ +++ L F + EE R ++K+ L R+ A ML TL AL +IDA+ A+ + R + P A+ P S VLEL EDG + G + + L+ +C + +AEE++ + L+L+++ GY ++ S PS AC ++ EG +L GW G VA AH A ++ C T Q +E + + + T + + K L R+A+ KA
Sbjct: 127 APSVVAAT-AGASASIQALGRQHVGLANTLSQDVCKSLGAYVDQQSAMLRGMIQEVHALVEDLEKEKAAHKKIRDKHKKACKEAEGVLKKGGALPLPPVPPPSSQLPDAIDVAVAAPPSLXXXXXXXXXXXTAADPISGPDHSDATSSPXXXXXXXXXXAVSS------------SVLRLQDRAQEALFDLRAMEKEYQTSKNRMEGKEGAFRRALQEHLGRFQVQEEARALFVKQQLQRVGAARGAMLTLF---EKTLHALQ---EQIDAIDPAADMAAHSRQVLALSP----PSAIPVPPS-------------------------------------VLELEEDGALALKRRVAPGVQHVEKCIKNLRALCQAFSALAAAEESYAKATLKLVKKSGY--------------------SLLPPSSLPSHYGACRRSLQKEGPSLQAGWHQYMRGMDAVA-NAHLLAASRISQSVCVTLAQTQDELAGARQEILVTQAASHKALAVTRTAYLKA 560 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8838.17864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8838.17864.1 >prot_L-elsbetiae_contig8838.17864.1 ID=prot_L-elsbetiae_contig8838.17864.1|Name=mRNA_L-elsbetiae_contig8838.17864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1327bp ALIRAAKHAGKGWGQTTTKRPVWAPSLVQEGWAGTVSAVNSWGKQHVGWAback to top mRNA from alignment at L-elsbetiae_contig8838:609..7997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8838.17864.1 ID=mRNA_L-elsbetiae_contig8838.17864.1|Name=mRNA_L-elsbetiae_contig8838.17864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7389bp|location=Sequence derived from alignment at L-elsbetiae_contig8838:609..7997+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8838:609..7997+ >mRNA_L-elsbetiae_contig8838.17864.1 ID=mRNA_L-elsbetiae_contig8838.17864.1|Name=mRNA_L-elsbetiae_contig8838.17864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7962bp|location=Sequence derived from alignment at L-elsbetiae_contig8838:609..7997+ (Laminarionema elsbetiae ELsaHSoW15)back to top |