mRNA_L-elsbetiae_contig8816.17847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8816.17847.1
Unique NamemRNA_L-elsbetiae_contig8816.17847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8816.17847.1 vs. uniprot
Match: A0A6H5K8E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8E9_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 8.630e-75
Identity = 135/173 (78.03%), Postives = 149/173 (86.13%), Query Frame = 2 
Query:   80 AGASMMGGTAAGGLPEVKMAKRGEVLEDGVIGTDEAREAKIDETLRKLGVQGISEVRKEQAEEEK--KSVGQQITSIFDLIPAETQLVMERVFIVGFVLCLVFLVFCGCAIGVEAYFLSTQGKLPPDLDDFIVHKLEPLFTPSLGLTFLFSSCLGVLKLGQMGQESVVYREDD 592
            AGA MM   + GG  +VK AKRGE+L+DG IG+D+AREAKI+ETLRK+GVQ I +VR  +A+E+K  KSVGQQITSIFDLIP ETQLVMERVFI GF +CL+FLV CGCAIGVEAYFLST GKLPPDLD FIV  LEPLFTPSLG TFLFSSCLGVLKLGQMGQESVVYREDD
Sbjct:  114 AGAPMM--ASGGGFADVKTAKRGEILQDGAIGSDDAREAKIEETLRKMGVQSIGQVRAAKAKEDKENKSVGQQITSIFDLIPPETQLVMERVFIAGFAVCLLFLVACGCAIGVEAYFLSTNGKLPPDLDKFIVGTLEPLFTPSLGATFLFSSCLGVLKLGQMGQESVVYREDD 284
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8816.17847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8E9_9PHAE8.630e-7578.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8816contigL-elsbetiae_contig8816:2308..6498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue1.6e-64
Seed eggNOG ortholog2880.D8LNL5
Hectar predicted targeting categoryother localisation
EggNOG OGs2CAEN@1,2SG8G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_006670.1
Exons4
Model size1934
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8816.17847.1prot_L-elsbetiae_contig8816.17847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8816 2399..5159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.1893737-UTR-L-elsbetiae_contig8816:2307..23981622816960.1893737-UTR-L-elsbetiae_contig8816:2307..2398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8816 2308..2398 +
1691683942.78698-UTR-L-elsbetiae_contig8816:2307..23981691683942.78698-UTR-L-elsbetiae_contig8816:2307..2398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8816 2308..2398 +
1622816960.2508702-UTR-L-elsbetiae_contig8816:5159..64981622816960.2508702-UTR-L-elsbetiae_contig8816:5159..6498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8816 5160..6498 +
1691683942.837567-UTR-L-elsbetiae_contig8816:5159..64981691683942.837567-UTR-L-elsbetiae_contig8816:5159..6498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8816 5160..6498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.2025144-CDS-L-elsbetiae_contig8816:2398..24531622816960.2025144-CDS-L-elsbetiae_contig8816:2398..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 2399..2453 +
1691683942.8003132-CDS-L-elsbetiae_contig8816:2398..24531691683942.8003132-CDS-L-elsbetiae_contig8816:2398..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 2399..2453 +
1622816960.2146251-CDS-L-elsbetiae_contig8816:3265..34291622816960.2146251-CDS-L-elsbetiae_contig8816:3265..3429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 3266..3429 +
1691683942.811712-CDS-L-elsbetiae_contig8816:3265..34291691683942.811712-CDS-L-elsbetiae_contig8816:3265..3429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 3266..3429 +
1622816960.2254527-CDS-L-elsbetiae_contig8816:4285..44501622816960.2254527-CDS-L-elsbetiae_contig8816:4285..4450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 4286..4450 +
1691683942.820613-CDS-L-elsbetiae_contig8816:4285..44501691683942.820613-CDS-L-elsbetiae_contig8816:4285..4450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 4286..4450 +
1622816960.2359736-CDS-L-elsbetiae_contig8816:5039..51591622816960.2359736-CDS-L-elsbetiae_contig8816:5039..5159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 5040..5159 +
1691683942.8291547-CDS-L-elsbetiae_contig8816:5039..51591691683942.8291547-CDS-L-elsbetiae_contig8816:5039..5159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8816 5040..5159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8816.17847.1

>prot_L-elsbetiae_contig8816.17847.1 ID=prot_L-elsbetiae_contig8816.17847.1|Name=mRNA_L-elsbetiae_contig8816.17847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MMGGTAAGGLPEVKMAKRGEVLEDGVIGTDEAREAKIDETLRKLGVQGIS
EVRKEQAEEEKKSVGQQITSIFDLIPAETQLVMERVFIVGFVLCLVFLVF
CGCAIGVEAYFLSTQGKLPPDLDDFIVHKLEPLFTPSLGLTFLFSSCLGV
LKLGQMGQESVVYREDD*
back to top

mRNA from alignment at L-elsbetiae_contig8816:2308..6498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8816.17847.1 ID=mRNA_L-elsbetiae_contig8816.17847.1|Name=mRNA_L-elsbetiae_contig8816.17847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4191bp|location=Sequence derived from alignment at L-elsbetiae_contig8816:2308..6498+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGCGGAGGAAGCACAGCGGTGACCGAGAAGAATTCGTCATCGGCGG
CGGCGGCGGCGGGTAGCGGGTTCCAAGATGCCGGTGCCTCCATGATGGGT
GGGACGGCCGCTGGGGGGCTGCCTGAAGTCAAGATGGCAAAACGAGGTAC
TACTTCTGTACATGCTAGTTAGCAGTTCTACATACACATGTGCCGGTTGC
CCCGGTGGTCTAGTTGGTAACCTCGCAACCTTTGTAAGAACGAGGTCATG
GGTTCGAGCCCTGGCGAAGCGAGTTTTTTTCTCACATTCGTTCCTGGAAA
ATTTAAAGCGAATTCGTTGGTAAATTGCAGTAGTTCGACTTCATTGTTGA
CAAGAGTGGGGAGTACTGAGCCCTGCTCGCGATAAAATCATCTAAGAAAG
GCACCGCAGGAGGGGGTCCACGCCCTCCCTGTGTGACCCCGGTTGGCTCG
TCTAGCTAGTCGTAGTGGAGTATGGGGGCCAGAGGGGTTAACGACGAATA
TGCCAATGATGGGAAGAGAAAAACGTGCCCTTCACCTCACCTCGTTGGTC
TGTGCCGAGCGTCCTTGTGGCCTGCTGCTGCTGTACCAAACACACCTCGG
CAGGGGTGAAGTCGCCTGTCTCTCGCTGATGTTTGCTGTCGTGTAAAGTC
GTGCGGGAACATCAGTACCATTAATGTCCGAGGCGTTGTTTTTGCCAGTC
TGCCCTTGCCCAACCTCGACGTTTCCTTCTACATACGCCGCGTTTGGTTT
TTTGCAACAACACTCGCGACTCGCGATCTAGATAAAACACGGGCGCCAAG
ATTGATATCTTGCATCGGTTTGTGTCCCATGTACCCCCTGCTGACAGGAG
CACAGGAGGCAGCGACATGCCACCCCACCCCGTTGTACTCATTGCCGTTT
CTTCCGCGTGCTCTCTGTCGGTGTTGACCGGAACCAAATGAACTGGATCG
TCTTTAAGGCGAGGTGCTCGAAGACGGCGTCATCGGCACAGATGAGGCTA
GGGAGGCCAAAATCGATGAGACCTTGAGAAAACTGGGTGTGCAGGGCATC
TCGGAGGTTCGCAAAGAGCAGGCCGAGGAGGAGAAAAAGAGCGTGGGGCA
GCAGATTACCTCCATTTTCGACGTGAGTTTTTTTCACTTCACAGCTGAAT
AGCTTCGATACGGATGCATGTGTGTTTGTATGTATGTAGTGCATGGCTTC
CGAGAGGGGGGGGGTCGGCCGTGGGGATGTGGAACTTCACCTCCAGTGAA
CCGAGAGAGAAAAAACCCAGAGAAACGACGCCTCCTCAACTGGTTCCAAG
TTGCTCCAAGACAAATTCATTTCACCACCGGGTCTTTCAGAGCACGGCAC
GTGAGATACGCCAGGCAGTGGGGGGAACCCAGGATGAAACATCCGACCGA
AAGTGCCCCCGTTGTCCAGAGCATCCATCTACAGTACCGGCAGAGGGGGA
ATAGTGCAGTATAGGAACGTTTCGCCCATGACACTTGCCCCAACCATGCG
GTGTGCTGGGAAAGGGAGTAGTACACTAGGGCGTACTTTGTCTCGCTACG
TACGGTATGAAATGCGCCAAGGTCAAAATCGTACCCTCCGTGTGACGTCT
CAGTCGCGCTGACAAAATATGGAGAGGCCGATCTTTTTTGCACACGTATT
CGCCCTCTCTACGTGAAATTAGTAAATGGGGGATTTTATGTCGACAGTTT
TCGTGCGAGGCTCTGTCGATACGGTGCACATCCTCGTCTCCACGTGCCAC
GCGGCACGGGCAGGTCTTTCTCTTCCCCCCCCCCTGATCTCTCATCTCTT
CGAAACAATCTTGGCTGATGAAACTGTAACTGTTCTCGCCTTCGCCTTTC
TCCCTTCCTTATGTCATTTTCTGTTTTTGTTTCGTTCGATGCAATGCAAT
GTGATGCAATGCAATTGGGTGCAATGCAATTGGGTGCAATGCAATTCGGT
GCAATGCAACACAACTCGATGCCACCAGCTTATTCCGGCCGAGACTCAGC
TGGTGATGGAGAGGGTCTTCATCGTGGGCTTCGTCCTGTGCTTGGTGTTC
TTGGTGTTCTGTGGGTGCGCCATCGGCGTGGAGGCATATTTCCTGAGCAC
ACAGGGCAAGCTTCCTCCAGACCTCGATGACTTTATCGTGCACGTGAGTG
GTGGAAACTACCGGCCTGTGGCAGCAGTTGCATGCGTGGGGATAGGATGA
GAAACCCACTGCACCATGGCCGCCCTCACAGAGGGGTCTCTGACTCGCCG
TGACTACCTCTGATCGCCTATTGAGACACACGCGATCCCCAAGAAAAACG
GCAGTGCCTGCCTCCCACCTTCTCTTTGGGATGGAGAGATTGGTGTTGCT
GCCGTCGTGGAGGTTTGTCGTTCCGGGCCTCATGCTGTTTACGCGGTGTA
TGTTGTTCATCTGCCTGTCGTGGTCCATTAGGGCTTTTAGGCACAACAAG
GCACAGTGGGTAGCTGGGTAGCTGGGTAGCTTGTCCCTATGACGGCCGGC
GTGAAGAAGCGCAAGCGGCACGAAGACCTCGCAACAGGTTACGGCAGGCT
TAGATTCACACCTTTCCCCTCCCGCGTGCGCGCTCATATATAGAAGTATG
TATGTACAAAGGGTGTATGCTCTCATTGTTTCGGGTGCTTTTGTCAGCCC
CCCCCGCCTTTCTTCTCTTGTTCATCTCCGCGGGATTCTCGCCCCTCTCA
CTACTCTCACGTCGCACACCACCATGTTACAGAAACTGGAGCCGCTCTTC
ACGCCGAGCCTCGGTTTGACCTTCCTCTTCTCGAGCTGCTTGGGGGTGCT
CAAGCTCGGGCAGATGGGACAGGAGAGCGTGGTGTACCGGGAGGATGACT
GATCCATGCATCCAAATCTGTGTACCGGCATTCGTACGGTCAACGTGACT
GATCTGCCTGCACGCGTGGTTCATGCGGTCGATGTAAGATAGATGGTCCA
CCCCGAACGTTCTGTGGTGGATTGGTCCGCAAGGGGACTATGGCCCGCTG
GTGTTGTAGGCGAACATTAATTGATAGAGAGGGGGGCTGGGACTGTGAGA
GATAGCCGCAACTTGCTGTTTTGTGTGTCTGACAAAAGTTGGGATACCTG
CCAAAAAGCGGTACGTTATTAATGTAGGTACGGCCGTGTCATCGGCCATC
ACCCCCACCCCGTTATCGATGTGGCATTATACATTATATGGTTCGGAGTA
GTCTACATAGTGATTCAAGGGCTGCGAAGCTATCAAGTGTTCGACACACA
CACGTATACCCATCACCATGAGATCCATGTGTAGCTATGTACGTACTTGT
GTGTCTTTCTTGTTGCTGGTGATGATAGTGTTGATGATTGTTGCACGGGG
CCGAGCGTGGCGCACGATGGTATAGATCAGATCACGGTTTACAAAACGGT
ATGCTAAGTTGTGTAGAGATACAACGATGCTGCAGATCCAGTTCAATCCA
ATTCTGCTGGTTTAACGCGGTATCGTTGTGTTGTGTGGTGTGCCAGCCTT
CCTCCTCTTCCCTTCCCTCGCTAGGGAGGAAGGTGAATGAAATATGCATT
CTCGGTTTTCTCATCTCTGCTAACTTGTCGTGTCCTCGGGGTGGATGAGA
TAAGTGCACATTGCTGTTGCTCATCTTCGACCTATCTTTTCCGGCGCTAT
TCCATGTAGAATGTGGTTATGGCGACCGGTTGGGTGTGTAACTACCGACA
CTTCGAAAGCAAGCTTGACTTTTAAGTCTCAGTTTTGTCAAGTGTAATCT
GAGTTTTGTCCCCTTGCTGCCGACAGCGAGCTCAGTTAAGTTTCCGTCGA
AGGTGGCTCACTGCCCACATTATTGCCGCTTGTTGACGTGCTCCACACTT
GTCTGTGCTGTGTTGCAATCCGACGCCCCCTACTCGGCAAGTAGCAGACA
GAGAGACGCAGGAATACCCACCCGAACCCTACATGAAATGACATGCATGT
AGGAAAAGTGCTTCGACTGTGTACCCCCTCCCTCTCTTTATCTTCCGCTT
GATCCGACGGCGTCAACAGTAGGCTTGTCGAGTGATGAAGAGAGCAAATC
AAAACACTCTCTCTGTTCGTTTGGACCATGCACGATAATAGAACATCGAT
GACCATGATGACTGACTTGGCGCACGTTGGGCGACACTCTTAGCCGACCT
CGTACTGCCGTAGTGAAGCGAAGCAAACACGCATCTGGGAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8816:2308..6498+

>mRNA_L-elsbetiae_contig8816.17847.1 ID=mRNA_L-elsbetiae_contig8816.17847.1|Name=mRNA_L-elsbetiae_contig8816.17847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig8816:2308..6498+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGTGGGACGGCCGCTGGGGGGCTGCCTGAAGTCAAGATGGCAAA
ACGAGATGATGGGTGGGACGGCCGCTGGGGGGCTGCCTGAAGTCAAGATG
GCAAAACGAGGCGAGGTGCTCGAAGACGGCGTCATCGGCACAGATGAGGC
TAGGGAGGCCAAAATCGATGAGACCTTGAGAAAACTGGGTGTGCAGGGCA
TCTCGGAGGTTCGCAAAGAGCAGGCCGAGGAGGAGAAAAAGAGCGTGGGG
CAGCAGATTACCTCCATTTTCGACGCGAGGTGCTCGAAGACGGCGTCATC
GGCACAGATGAGGCTAGGGAGGCCAAAATCGATGAGACCTTGAGAAAACT
GGGTGTGCAGGGCATCTCGGAGGTTCGCAAAGAGCAGGCCGAGGAGGAGA
AAAAGAGCGTGGGGCAGCAGATTACCTCCATTTTCGACCTTATTCCGGCC
GAGACTCAGCTGGTGATGGAGAGGGTCTTCATCGTGGGCTTCGTCCTGTG
CTTGGTGTTCTTGGTGTTCTGTGGGTGCGCCATCGGCGTGGAGGCATATT
TCCTGAGCACACAGGGCAAGCTTCCTCCAGACCTCGATGACTTTATCGTG
CACCTTATTCCGGCCGAGACTCAGCTGGTGATGGAGAGGGTCTTCATCGT
GGGCTTCGTCCTGTGCTTGGTGTTCTTGGTGTTCTGTGGGTGCGCCATCG
GCGTGGAGGCATATTTCCTGAGCACACAGGGCAAGCTTCCTCCAGACCTC
GATGACTTTATCGTGCACAAACTGGAGCCGCTCTTCACGCCGAGCCTCGG
TTTGACCTTCCTCTTCTCGAGCTGCTTGGGGGTGCTCAAGCTCGGGCAGA
TGGGACAGGAGAGCGTGGTGTACCGGGAGGATGACTGAAAACTGGAGCCG
CTCTTCACGCCGAGCCTCGGTTTGACCTTCCTCTTCTCGAGCTGCTTGGG
GGTGCTCAAGCTCGGGCAGATGGGACAGGAGAGCGTGGTGTACCGGGAGG
ATGACTGA
back to top