mRNA_L-elsbetiae_contig8814.17846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8814.17846.1
Unique NamemRNA_L-elsbetiae_contig8814.17846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8814.17846.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.010e-11
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:    2 LTGSTTFINNSAFWGGAIYNNIPDD----PETMTTFPGGTIFDGNEAENCPDVNNANVFDGNNENCPVV 196
            L GSTTF  N+AF GGAIY +  D+    P ++TTFP  T+F+ N AE+CPDV+N     G+++NCPVV
Sbjct:  318 LMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHN-----GDSDNCPVV 381
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BLAST of mRNA_L-elsbetiae_contig8814.17846.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.210e-9
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:    2 LTGSTTFINNSAFWGGAIYNN----IPDDPETMTTFPGGTIFDGNEAENCPDVNNANVFDGNNENCPVV 196
            L GSTTF  N+A+ GGAIY +       +  ++TTFP  T+F+ N A+ CPDV     FDG+N+NCPVV
Sbjct:  318 LMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDV-----FDGDNDNCPVV 381
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BLAST of mRNA_L-elsbetiae_contig8814.17846.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.100e-9
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:    2 LTGSTTFINNSAFWGGAIYNNIPDD--PETMTTFPGGTIFDGNEAEN-CPDVNNANVFDGNNENCPVV 196
            L G TTF  N A+WGGAIY    DD  P ++TTFP  T+F+ N A+  CPDV+N     G++ NCPVV
Sbjct:  113 LMGPTTFRENGAWWGGAIYT---DDGYPASVTTFPDDTVFEDNSADAYCPDVHN-----GDDNNCPVV 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8814.17846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI2.010e-1152.17Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI1.210e-949.28Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI7.100e-951.47Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8814contigL-elsbetiae_contig8814:4899..6012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size275
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8814.17846.1prot_L-elsbetiae_contig8814.17846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8814 4984..5936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.1182384-UTR-L-elsbetiae_contig8814:4898..49831622816960.1182384-UTR-L-elsbetiae_contig8814:4898..4983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8814 4899..4983 +
1691683942.7473178-UTR-L-elsbetiae_contig8814:4898..49831691683942.7473178-UTR-L-elsbetiae_contig8814:4898..4983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8814 4899..4983 +
1622816960.1561153-UTR-L-elsbetiae_contig8814:5936..60121622816960.1561153-UTR-L-elsbetiae_contig8814:5936..6012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8814 5937..6012 +
1691683942.7762496-UTR-L-elsbetiae_contig8814:5936..60121691683942.7762496-UTR-L-elsbetiae_contig8814:5936..6012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8814 5937..6012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.1289308-CDS-L-elsbetiae_contig8814:4983..50311622816960.1289308-CDS-L-elsbetiae_contig8814:4983..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8814 4984..5031 +
1691683942.7581458-CDS-L-elsbetiae_contig8814:4983..50311691683942.7581458-CDS-L-elsbetiae_contig8814:4983..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8814 4984..5031 +
1622816960.1420832-CDS-L-elsbetiae_contig8814:5870..59361622816960.1420832-CDS-L-elsbetiae_contig8814:5870..5936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8814 5871..5936 +
1691683942.767243-CDS-L-elsbetiae_contig8814:5870..59361691683942.767243-CDS-L-elsbetiae_contig8814:5870..5936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8814 5871..5936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8814.17846.1

>prot_L-elsbetiae_contig8814.17846.1 ID=prot_L-elsbetiae_contig8814.17846.1|Name=mRNA_L-elsbetiae_contig8814.17846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
MTTFPGGTIFDGNEAENCPDVNNANVFDGNNENCPVV*
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mRNA from alignment at L-elsbetiae_contig8814:4899..6012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8814.17846.1 ID=mRNA_L-elsbetiae_contig8814.17846.1|Name=mRNA_L-elsbetiae_contig8814.17846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1114bp|location=Sequence derived from alignment at L-elsbetiae_contig8814:4899..6012+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGACGGGGTCTACAACTTTCATCAACAACTCGGCCTTCTGGGGTGGGG
CTATCTACAACAACATCCCCGATGACCCCGAGACAATGACGACGTTCCCC
GGTGGCACCATCTTCGACGGCAACGAGGCCGAGGTGAGATTCACTGCTTT
TGTCGACAGGAATACTCTCAGGTTTTGATAGTGTTGCGGTCACAACAGCG
AGGACGAGACGAAAGATGTGCGGAAGAAACAACCGCATCTTCTCGACGGA
GCAAGTGAGTGGTTGATGGACGATCCTAGGGAGAGGTGGTGCGGCCCGAA
ATAGTAGAAAACGTCGGCAGTCGGTGTCTCGGCATGTCACCATCCGCTGG
CTACCCGCATTGCGACCTATTCGAACTTTGGCCAAAGACGTTCGTCCGGT
GGCTCGCTCCCGCAGCAGTCCGTACCGCAGGCTCCTACGCAGCAGCATCT
CCCCCTGAAATATACATTTGGCAAGTAACTCTTATCAATCGCTTGCTAGT
AGCTTCAGAGTTGCTCAAGAGCCTGGTTCTCCATTGAACGTTTCCCCGTC
GAAGCAACAGTCACGTGGCAGTCGCGTTTGAAAACAGCAGAAGAACTGCA
GCACAGAAGCCACAGAAGCCACACGGCTACTATAAAATGGCACCATTGTG
CACTATCTATGTTTGAATCCAAAGTGGTGGCTCCTTGCGATCGTATATGC
GAGGTAAGTTGCAAAGCATATGGCTTTCCAAGTGCATCCTGCCTGCAGTG
TAGATGCACAAAGTAGGAAGGGAGGTCACCCCAAGCACAAAGGAGTAGAC
TCGACACGAACACAAAGCACGTAGTAGAGTAGGCTTATGGAAAGGGGCCG
TCTAGAAGATGAAAACACCAACAGCAGTGTCTTCAAATGGCTCAAATAAT
ATTATTGCTCAGTGTTCACACTGCCTGCGCCCGCCATGCATTCGCTTTTT
GTTGGCTCCTCTCTACTTCCAGAACTGCCCCGACGTGAACAACGCCAACG
TATTCGACGGAAACAATGAGAATTGTCCCGTGGTCTGAACTGCTGAAACG
ACAATCAGCCCATACCAAGTGCCCTACGACGAACGGTGGTATTGAGGAAT
ACCACAGTTAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8814:4899..6012+

>mRNA_L-elsbetiae_contig8814.17846.1 ID=mRNA_L-elsbetiae_contig8814.17846.1|Name=mRNA_L-elsbetiae_contig8814.17846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig8814:4899..6012+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACGTTCCCCGGTGGCACCATCTTCGACGGCAACGAGGCCGAGAT
GACGACGTTCCCCGGTGGCACCATCTTCGACGGCAACGAGGCCGAGAACT
GCCCCGACGTGAACAACGCCAACGTATTCGACGGAAACAATGAGAATTGT
CCCGTGGTCTGAAACTGCCCCGACGTGAACAACGCCAACGTATTCGACGG
AAACAATGAGAATTGTCCCGTGGTCTGA
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