mRNA_L-elsbetiae_contig8797.17826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8797.17826.1
Unique NamemRNA_L-elsbetiae_contig8797.17826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8797.17826.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.610e-23
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:    2 MLIYVRRGVPWGPSSAEGGAATLPDDVLATVQSCNAALAARVAEFKLKKRELEEDMRSRRELYSEFFGPPLKPPTPASRKGKGKAPA 262
            MLIYV+RGV WGPSSAE  A  LP+DVLA VQ+ N  L A V  +  +K  L+ DM+ RRELY+  FGPPLKP  PA RKGKGK PA
Sbjct:  957 MLIYVKRGVAWGPSSAERDAEKLPEDVLAAVQASNETLLANVDRYDCEKLVLDGDMQDRRELYARIFGPPLKPAPPAGRKGKGKGPA 1043
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BLAST of mRNA_L-elsbetiae_contig8797.17826.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.290e-22
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:    2 MLIYVRRGVPWGPSSAEGGAATLPDDVLATVQSCNAALAARVAEFKLKKRELEEDMRSRRELYSEFFGPPLKPPTPASRKGKGKAPA 262
            MLIYV+RGV WGPSSAE  A  LP+DVLA V++ N AL A V  +  +K  L+  M+ RRELY+  FGPPLKP  PA RKGKGK PA
Sbjct:  396 MLIYVKRGVAWGPSSAERDAEKLPEDVLAAVKASNEALLANVDRYDREKLLLDRHMQDRRELYARIFGPPLKPAPPAGRKGKGKGPA 482
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8797.17826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKX6_ECTSI2.610e-2362.07Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A6H5L6A7_9PHAE2.290e-2260.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8797contigL-elsbetiae_contig8797:736..4557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.3e-21
Seed eggNOG ortholog2880.D8LKX6
Preferred nameUSP48
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Exons3
Model size267
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8797.17826.1prot_L-elsbetiae_contig8797.17826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8797 736..4556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.4961474-CDS-L-elsbetiae_contig8797:735..7581622816958.4961474-CDS-L-elsbetiae_contig8797:735..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 736..758 -
1691683941.588293-CDS-L-elsbetiae_contig8797:735..7581691683941.588293-CDS-L-elsbetiae_contig8797:735..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 736..758 -
1622816958.5121882-CDS-L-elsbetiae_contig8797:3513..36701622816958.5121882-CDS-L-elsbetiae_contig8797:3513..3670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 3514..3670 -
1691683941.602586-CDS-L-elsbetiae_contig8797:3513..36701691683941.602586-CDS-L-elsbetiae_contig8797:3513..3670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 3514..3670 -
1622816958.528872-CDS-L-elsbetiae_contig8797:4472..45561622816958.528872-CDS-L-elsbetiae_contig8797:4472..4556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 4473..4556 -
1691683941.6114173-CDS-L-elsbetiae_contig8797:4472..45561691683941.6114173-CDS-L-elsbetiae_contig8797:4472..4556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8797 4473..4556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.5441248-UTR-L-elsbetiae_contig8797:4556..45571622816958.5441248-UTR-L-elsbetiae_contig8797:4556..4557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8797 4557..4557 -
1691683941.620852-UTR-L-elsbetiae_contig8797:4556..45571691683941.620852-UTR-L-elsbetiae_contig8797:4556..4557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8797 4557..4557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8797.17826.1

>prot_L-elsbetiae_contig8797.17826.1 ID=prot_L-elsbetiae_contig8797.17826.1|Name=mRNA_L-elsbetiae_contig8797.17826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MLIYVRRGVPWGPSSAEGGAATLPDDVLATVQSCNAALAARVAEFKLKKR
ELEEDMRSRRELYSEFFGPPLKPPTPASRKGKGKAPAT
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mRNA from alignment at L-elsbetiae_contig8797:736..4557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8797.17826.1 ID=mRNA_L-elsbetiae_contig8797.17826.1|Name=mRNA_L-elsbetiae_contig8797.17826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3822bp|location=Sequence derived from alignment at L-elsbetiae_contig8797:736..4557- (Laminarionema elsbetiae ELsaHSoW15)
CATGCTGATCTACGTAAGGCGAGGGGTTCCGTGGGGGCCGAGCAGTGCCG
AGGGGGGTGCCGCCACGCTGCCGGATGATGTTCTGGTGAGCTTTTCAAGT
CGAAGTCAAGTTTTTTTTTTTTTTGTCACCGTGGCCGGAGAAGAAGAGAA
GCCGAAGCCCGGTGCCCTGTTGTTTCTATCCGTTGACCTCTACAAAGCGC
CAGATTTTCGGTGAACCATGTCGTGCGAGTGTGTGGTGAATCAGGCGGTC
GACGCACCGAACCTCCCCCCCCCACTCCGTCAGCGATTACATAACATCCC
CCACAGCATTCATTGCCCTGTGTCTTACGTTTCCCCGCGGGCTCGGGGAG
AAATGAATTAATTGGCTCAAGGTTGCCGTCCGCGTCACCCCCCCCCCCCC
CCCCCCCCCCCCCCCTTTTTCTTTTTTATAAACACCCAATTTATTTTTCT
GGCCGGGTTCCAGGGGCCCCGGGGGGCAAAGCCTGGGNNNNNNNNNNCGT
TCTTTTTTCCGTTTCCCCGCTGGCTCGGGGAGAAATCAATTAGTTGGCTC
ACGGTTCCCCCCCCCCTCCCCCCCCCCCCCCCCTCCACCCCTTCTTTTTG
CGATTTAAATACAGCCGTATTTAGTGTCTCGGCTGCGTCGACAGTGTCCG
CGAGGCAAAAGCCTGGGTCTCGGGGTGTGTTTCTAGGCTTACTGTATACC
TGGTACATACGTGACTTGCGCTTGGTATCCGTGTGTCGTGCAACAACACC
TGTCATAATAGTGCGGGTGTAGATACATGTACATACATATGTATGATGCT
GCTACATATAATGCTGCTGCACCCCTTGTTGTTGCTTTTTACGTTGGCGG
TTGTCTTCGACCCGACCCGACCCGACCCCGAGAGCAGGCGACCGTGCAGA
GCTGCAACGCGGCCCTGGCCGCCAGAGTCGCCGAGTTCAAGCTCAAGAAG
CGAGAGCTTGAGGAGGACATGCGGTCAAGGCGGGAGCTCTACTCGGAGTT
TTTCGGACCGCCCCTCAAGCCCCCGACTCCCGCCAGCCGCAAGGGTGAGG
AGCCAAGCCGCGAGCCACAGGCCACAGGCCACAAGTCACCCTATTGTACA
CACAAGCCACGCCCCAGTCAGTCAAGTTTTGCGTTCTGAACGGTTGCGAT
TTTCTGTCAACGCTTTGCGTTCGCGTTCGCGCTTTGCGGGTCAAGTCAGG
TAGGTCACACGCTTGGAAGCGCTTTTGCGTGGCTCGCCGCTTGCTCACGT
CACCGCTCGGTGGTTCGCCGTGTTTTGTGTTCGTTGCCGCGCTGCTGGGA
GTGTGTTTTCGTCGCCACTCGCGATATGCCGGTGCTTGTGTGTGTGTGTG
TGTGTGTGTGGATGGCGCTGCTGTCCCGTTGTTGCACAGCAGTCATCGAG
TGGAGCTAGAGTTGTCGCTCGATTCGATGACCGGCCGCTCGGCTTTCAGA
AGCATACAAATCGGAAGCGTGGACACCAGTTTTCTCAGCACCTCGACCCA
AAAGGAGCGAATGGGATTATCTCTAGAAAACACACGAACATCATAATAAC
TAACCGTCAGGGGGGTATCCTATGGAAACGATTCTAGGAACGGTACTAGG
AGCGTTCCTCTTGGATCTTGTGCCGACGAGGCAATCTGATTGGCCAATGG
TTTGAAGCTAAACATGACCTCCAAGACCAAAAGCAACACTTGAGCAGTAA
TCACACCCCAAGCCAGGCTTGTTCTGCTCGAATCTGATAGAGGTGCCCCC
GTTACCAGCGGCTTTGTTGGGATGCCAGACGACGTATCCACGTGAACTTT
CACAGACTACTCCGGGTTGTCTTGTTGTAATACTTCTATTAATATTTGCA
TACAATATGTCCCTCCGGGCGTGATTCATTTTATGTAATGACAAAATCCA
TGGGGTAAGCAAGATAATAAACAAAGCGTCCGATACCAGCGTCCAAAAGA
GGCACACGCCGACTCCTATGTAGGAGGCACGCTTTAATATCCTTAGTTTG
ACTTTTTGTAGACAGGGATAGACACGGACCCATCAGAGGCACGACGCGAG
CAGGTCTGAGCGTGCGTCTGGCGTGTCGTGCGTGTTTTTTTGTTTATGTT
TGAGGCACGCTCTATATCCCTAACCCCTTCTCTGTGGTGGCGACCTTGGC
ATGAGTGTAAACGTAGTGTGTGTGCCATCAGAGGGCCCGACTACTACTGT
CGCTGCCACACCTATCATGGATATTGGTCGACATTATCACGTGGTATATT
TTAGAGGCGGACGTCGACAAAAAATAACGATTTTCCCGACGTATTTTAAA
TTGTTGTGTTTGAAAAGTCAACACTTTTGGTGATGTTGTTCACGCGGCGT
GTGGTGCGTGTGTGCCATCAGTCGACTGGCCAGCTGTCAGAAAGTTACAC
CTGACTTGTGGACGACTGCTGTTGTTTTGATTTAACGTATTTGAGGGGCG
AACGGCCCTGCAGCTGCCGCATAAAACTCAAAACAGCCTGCACGTGGCGC
AGCGGCACCTGGCCGCTTTGAGTGCGTAAGTCTCGGCTTTTCGGGGGGTG
TGGTACGCTTCGGCGTAACCGATGACGTGGATAACCTGTTTTCCCGGTGT
AAACGAGAGTGGTGGCAGCCCGTTCCCGGCTGCTGAGGCGGCTGAGGCTG
CTGGGGCTGATGCGACGCCTGCTGACTGGTTCTTTTCTTCCAGAACTCCA
CCAGCCCCAGCACCAATACCAGTACCACGGGGGATTTTGCGACCCATCGA
GATAATGTCCTCTTAACTATGTACTCCTCTTTGACTTGGGTTTGGGGTTT
GGTTTGAGGAAGTGAACACTGGTGCTTGAACAGAGCCACCGAAAGAAGCG
CGCGCCGACCGCTCGAGGCCGCGCCATGCCCTAAGACAGGAATGTACACG
GATTCATCACGGGTACGATGCGAGCAGGTCTGAGCCGACGCGAGCAGATT
CGAGCGAAGCGGGCGAGTGTGAGCGACACCAGCAGGCCCAAGCGTGCGTC
ACGCCGAAGTCTGAAGGGGTGGACACGTCTCCATCGAACGCACGACGCGA
GAAGCTCTGGGTGTGCGCAGTTTTCCCGTGCGCAGTTTTCCCCGACGTGT
TTTTGCGGTTGGAAAGCAAACGTGTTTTTTCCCCCGACGGGTTTTTCACG
TATCCATCAAACGCACGACGCGAGCAGCTCTGGGCGTGCGCAGTTTTTCC
CCGACGGGTAAAACAAAATGTTTGCTTTCCTTGGCGGGTTTTTCACGTAT
CCATCAAACACACGACGCCAGCAGCTCTGGCGTGCGCAGTTTTGGAAAGC
ATGGTTGCGTACAATAGCCATCAGTCGACTGGCTAGCTGTCAGAGGGAGG
TTTGCGTTTGGAAGCAAGTACTGATGGTGCTGTTCACGTGTGCGTATGGT
GCGTAGCCATCAGTCGACTGGCTAGCTGTCAGAAAGCTTAGACTGCTGTT
TTCATTCAACGACACAGCAAATATGTATTTCATCCGATGAGCTGTGGCTG
ACGTATTTGAGGCGCGAACAGTCTGCAGGTGGCGCGGCACGCAAACAAAT
GTCTTGGAAAACAGCCGATCCAGAGCCTACCGCACCCGAGGAAACTTCTT
TAAAAAGCGAAAGCAAAAAGATATATACATACTGTATTTACACAATTGTC
TTGTTTTGGTTTTTACGTTATATTGTGCTGGCCGGAAATGCACGGTCTGA
TTGATTTCACAAGGCAGCCAAACTGTCGACCCCCCCCCCCCCCCCTCCCC
CCTCACCTCCCCCCTGCGGATTTGTACGTGTGATTGGGGAACACACCAGG
GAAGGGAAAAGCCCCCGCCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8797:736..4557-

>mRNA_L-elsbetiae_contig8797.17826.1 ID=mRNA_L-elsbetiae_contig8797.17826.1|Name=mRNA_L-elsbetiae_contig8797.17826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig8797:736..4557- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATCTACGTAAGGCGAGGGGTTCCGTGGGGGCCGAGCAGTGCCGA
GGGGGGTGCCGCCACGCTGCCGGATGATGTTCTGATGCTGATCTACGTAA
GGCGAGGGGTTCCGTGGGGGCCGAGCAGTGCCGAGGGGGGTGCCGCCACG
CTGCCGGATGATGTTCTGGCGACCGTGCAGAGCTGCAACGCGGCCCTGGC
CGCCAGAGTCGCCGAGTTCAAGCTCAAGAAGCGAGAGCTTGAGGAGGACA
TGCGGTCAAGGCGGGAGCTCTACTCGGAGTTTTTCGGACCGCCCCTCAAG
CCCCCGACTCCCGCCAGCCGCAAGGGCGACCGTGCAGAGCTGCAACGCGG
CCCTGGCCGCCAGAGTCGCCGAGTTCAAGCTCAAGAAGCGAGAGCTTGAG
GAGGACATGCGGTCAAGGCGGGAGCTCTACTCGGAGTTTTTCGGACCGCC
CCTCAAGCCCCCGACTCCCGCCAGCCGCAAGGGGAAGGGAAAAGCCCCCG
CCACGGGAAGGGAAAAGCCCCCGCCACG
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