mRNA_L-elsbetiae_contig8795.17822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8795.17822.1
Unique NamemRNA_L-elsbetiae_contig8795.17822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8795.17822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8795contigL-elsbetiae_contig8795:236..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8795.17822.1prot_L-elsbetiae_contig8795.17822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8795 248..589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.1866035-UTR-L-elsbetiae_contig8795:235..2471622816958.1866035-UTR-L-elsbetiae_contig8795:235..247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8795 236..247 +
1691683941.3748305-UTR-L-elsbetiae_contig8795:235..2471691683941.3748305-UTR-L-elsbetiae_contig8795:235..247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8795 236..247 +
1622816958.2089355-UTR-L-elsbetiae_contig8795:589..6081622816958.2089355-UTR-L-elsbetiae_contig8795:589..608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8795 590..608 +
1691683941.396382-UTR-L-elsbetiae_contig8795:589..6081691683941.396382-UTR-L-elsbetiae_contig8795:589..608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8795 590..608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.1978106-CDS-L-elsbetiae_contig8795:247..5891622816958.1978106-CDS-L-elsbetiae_contig8795:247..589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 248..589 +
1691683941.3880339-CDS-L-elsbetiae_contig8795:247..5891691683941.3880339-CDS-L-elsbetiae_contig8795:247..589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 248..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8795.17822.1

>prot_L-elsbetiae_contig8795.17822.1 ID=prot_L-elsbetiae_contig8795.17822.1|Name=mRNA_L-elsbetiae_contig8795.17822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MPASYLLFPSTPLTSRSTPTEPRRCFLRVRTRKQAERTNCVGQLCCLVRS
SRILPPSLRQLLHAPQVGGFPFSSPWKQTTQKHYLAPAFGWVAPREHEPL
PATCPTSTVRNQT*
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mRNA from alignment at L-elsbetiae_contig8795:236..608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8795.17822.1 ID=mRNA_L-elsbetiae_contig8795.17822.1|Name=mRNA_L-elsbetiae_contig8795.17822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=373bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:236..608+ (Laminarionema elsbetiae ELsaHSoW15)
TGATTTCTCGAGATGCCGGCATCCTATCTTTTGTTTCCGTCCACCCCTCT
CACCTCTCGCTCCACCCCCACGGAACCGCGCCGCTGCTTCCTCCGAGTAA
GAACGCGAAAACAAGCAGAACGGACGAATTGTGTAGGACAGTTGTGCTGT
TTGGTCCGGTCCTCTCGTATTCTTCCCCCGTCCCTCCGCCAGCTACTTCA
TGCGCCACAGGTAGGCGGCTTTCCCTTCTCCTCCCCTTGGAAACAAACAA
CACAAAAGCACTATCTTGCCCCCGCATTTGGGTGGGTGGCTCCCAGAGAA
CATGAACCGCTCCCCGCCACATGTCCCACCTCCACAGTCAGAAACCAGAC
CTGAAGGTTTTGCTACGTTTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8795:236..608+

>mRNA_L-elsbetiae_contig8795.17822.1 ID=mRNA_L-elsbetiae_contig8795.17822.1|Name=mRNA_L-elsbetiae_contig8795.17822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:236..608+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCATCCTATCTTTTGTTTCCGTCCACCCCTCTCACCTCTCGCTC
CACCCCCACGGAACCGCGCCGCTGCTTCCTCCGAGTAAGAACGCGAAAAC
AAGCAGAACGGACGAATTGTGTAGGACAGTTGTGCTGTTTGGTCCGGTCC
TCTCGTATTCTTCCCCCGTCCCTCCGCCAGCTACTTCATGCGCCACAGGT
AGGCGGCTTTCCCTTCTCCTCCCCTTGGAAACAAACAACACAAAAGCACT
ATCTTGCCCCCGCATTTGGGTGGGTGGCTCCCAGAGAACATGAACCGCTC
CCCGCCACATGTCCCACCTCCACAGTCAGAAACCAGACCTGAATGCCGGC
ATCCTATCTTTTGTTTCCGTCCACCCCTCTCACCTCTCGCTCCACCCCCA
CGGAACCGCGCCGCTGCTTCCTCCGAGTAAGAACGCGAAAACAAGCAGAA
CGGACGAATTGTGTAGGACAGTTGTGCTGTTTGGTCCGGTCCTCTCGTAT
TCTTCCCCCGTCCCTCCGCCAGCTACTTCATGCGCCACAGGTAGGCGGCT
TTCCCTTCTCCTCCCCTTGGAAACAAACAACACAAAAGCACTATCTTGCC
CCCGCATTTGGGTGGGTGGCTCCCAGAGAACATGAACCGCTCCCCGCCAC
ATGTCCCACCTCCACAGTCAGAAACCAGACCTGA
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