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Homology
BLAST of mRNA_L-elsbetiae_contig8792.17820.1 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI) HSP 1 Score: 202 bits (514), Expect = 2.230e-56 Identity = 99/195 (50.77%), Postives = 130/195 (66.67%), Query Frame = 1
Query: 1 GRFMTRYTFPLVLRSSHLREMRAGIAGNLGVATFEEAFRMICSQGAGSYSQFEIMMNYLWYNINDGYSWHIADPLSGRFEEISGHGRPRATEDEAVLARNVPTVLPMRHMGKEIDSGSIGPSALFKNLCFGSGYKAGYCTSREPTDRDGWPITGSWTVGDTTWEKTYQDHTSSVARAHPAFDWRREAQEDWVHPG 585
GRFMTR FP++++S H +MR IA NLG TFEEAF++ICS G SYSQFEIM+NYLWY +D YSWHIAD +G F ++ GR RA++D +V+A NVP + M+H+ + D ++ +++N+C GS +AG C R P DG T W+VG TTW TY+DH+ V+RA AF WR E EDWVH G
Sbjct: 213 GRFMTRIAFPIIIKSEHFSQMRQVIAENLGAETFEEAFKVICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDNGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDK-DVFTLNDD-MYENVCLGSNNEAGNCQRRPPAQNDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVG 405
BLAST of mRNA_L-elsbetiae_contig8792.17820.1 vs. uniprot
Match: A0A6H5K9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S0_9PHAE) HSP 1 Score: 191 bits (484), Expect = 7.040e-54 Identity = 97/197 (49.24%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 GRFMTRYTFPLVLRSSHLREMRAGIAGNLGVATFEEAFRMICSQGAGSYSQFEIMMNYLWYNINDGYSWHIADPLSGRFEEISGHGRPRATEDEAVLARNVPTVLPMRH--MGKEIDSGSIGPSALFKNLCFGSGYKAGYCTSREPTDRDGWPITGSWTVGDTTWEKTYQDHTSSVARAHPAFDWRREAQEDWVHPG 585
GRFMT FP++++S H +MR I NLG ATF EAF MICS+GA SYSQFEIM+ YLWYN +D YSWHIADP + + ++ G R ED+ V+A NVP ++ M+H + IDS + + LC GS AG C SR P+ DG T W+VG+ TW TY++H++ ++RA AF WRRE +DW+HPG
Sbjct: 58 GRFMTPMIFPVIVKSDHFDDMRRDITRNLGAATFAEAFHMICSEGANSYSQFEIMVTYLWYNKHDEYSWHIADPANMDAKSLN-IGDKRYYEDDRVVATNVPVIVVMKHSKIRTSIDSDT------YDYLCLGSNNLAGNCQSRVPSPLDGSAQTVQWSVGNQTWMHTYEEHSTKLSRAGKAFRWRRETAQDWIHPG 247
BLAST of mRNA_L-elsbetiae_contig8792.17820.1 vs. uniprot
Match: A0A3M7T151_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T151_BRAPC) HSP 1 Score: 94.7 bits (234), Expect = 3.710e-17 Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 1 GRFMTRYTFPLVLRSSHLREMRAGIAGNLGVATFEEAFRMICSQGAGSYSQFEIMMNYLWYNINDGYSWHIADPLSGRFEEISGHGR--PRATEDEAVLA-RNVPTVLPMRHMGKEIDSGSIGPSALFKNLCFGSGYKAGYCTS 423
G FM R FP++++ +H +++R I + TFEEAF ICS+ G YSQF+++++YLWY + YSWH+ D L GH R RAT D V+ N P + +H G ++ + +F +C S +AG C S
Sbjct: 240 GEFMNRGNFPIIIKRNHFKQIRMHITKTMATRTFEEAFHSICSKYKGQYSQFDLLVHYLWYFKRNEYSWHLKDVLE------FGHYRMPKRATNDTDVIQMNNKPMISVAKHAGSLLNYPNYMFKIMFDYMCVASDNQAGSCGS 377
BLAST of mRNA_L-elsbetiae_contig8792.17820.1 vs. uniprot
Match: A0A7S4LJY0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LJY0_9EUGL) HSP 1 Score: 59.7 bits (143), Expect = 9.290e-6 Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 1
Query: 25 FPLVLRSSHLREMRAGIAGNLGVATFEEAFRMICSQGAGSYSQFEIMMNYLWYNINDGYSWHIADPL-------SGRFE----EISGHGRPRATED 279
FP+++ S R IA +G TF +AFR + A SY+QF I++N+ WYN D Y WH+ L +G++ I+ H R A E+
Sbjct: 432 FPIMIWRSDFELFRQHIANTIGNGTFNDAFRRFATD-ANSYNQFNIILNWAWYNRRDAYDWHLQSVLMSQDDMRNGKYNTIAPRIATHARGMAPEE 526
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-09_000180.1 |
| Exons | 3 |
| Model size | 1485 |
| Cds size | 582 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816957.9543798-UTR-L-elsbetiae_contig8792:3446..3455 | 1622816957.9543798-UTR-L-elsbetiae_contig8792:3446..3455 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8792 3447..3455 + |
| 1691683941.1821444-UTR-L-elsbetiae_contig8792:3446..3455 | 1691683941.1821444-UTR-L-elsbetiae_contig8792:3446..3455 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8792 3447..3455 + |
| 1622816958.0047889-UTR-L-elsbetiae_contig8792:7068..7962 | 1622816958.0047889-UTR-L-elsbetiae_contig8792:7068..7962 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8792 7069..7962 + |
| 1691683941.230657-UTR-L-elsbetiae_contig8792:7068..7962 | 1691683941.230657-UTR-L-elsbetiae_contig8792:7068..7962 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8792 7069..7962 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816957.967815-CDS-L-elsbetiae_contig8792:3455..3712 | 1622816957.967815-CDS-L-elsbetiae_contig8792:3455..3712 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 3456..3712 + |
| 1691683941.1922462-CDS-L-elsbetiae_contig8792:3455..3712 | 1691683941.1922462-CDS-L-elsbetiae_contig8792:3455..3712 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 3456..3712 + |
| 1622816957.979857-CDS-L-elsbetiae_contig8792:5945..6084 | 1622816957.979857-CDS-L-elsbetiae_contig8792:5945..6084 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 5946..6084 + |
| 1691683941.2017596-CDS-L-elsbetiae_contig8792:5945..6084 | 1691683941.2017596-CDS-L-elsbetiae_contig8792:5945..6084 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 5946..6084 + |
| 1622816957.994538-CDS-L-elsbetiae_contig8792:6882..7068 | 1622816957.994538-CDS-L-elsbetiae_contig8792:6882..7068 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 6883..7068 + |
| 1691683941.2145247-CDS-L-elsbetiae_contig8792:6882..7068 | 1691683941.2145247-CDS-L-elsbetiae_contig8792:6882..7068 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8792 6883..7068 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8792.17820.1 >prot_L-elsbetiae_contig8792.17820.1 ID=prot_L-elsbetiae_contig8792.17820.1|Name=mRNA_L-elsbetiae_contig8792.17820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MTRYTFPLVLRSSHLREMRAGIAGNLGVATFEEAFRMICSQGAGSYSQFE IMMNYLWYNINDGYSWHIADPLSGRFEEISGHGRPRATEDEAVLARNVPT VLPMRHMGKEIDSGSIGPSALFKNLCFGSGYKAGYCTSREPTDRDGWPIT GSWTVGDTTWEKTYQDHTSSVARAHPAFDWRREAQEDWVHPGE* back to topmRNA from alignment at L-elsbetiae_contig8792:3447..7962+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8792.17820.1 ID=mRNA_L-elsbetiae_contig8792.17820.1|Name=mRNA_L-elsbetiae_contig8792.17820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4516bp|location=Sequence derived from alignment at L-elsbetiae_contig8792:3447..7962+ (Laminarionema elsbetiae ELsaHSoW15) GGGAGGTTCATGACGAGGTACACGTTCCCGCTCGTCCTGAGATCGTCCCA
CCTGCGGGAGATGAGGGCGGGTATCGCGGGGAACCTGGGCGTAGCTACAT
TCGAGGAGGCGTTTCGAATGATCTGCTCCCAGGGGGCCGGCAGCTACTCC
CAGTTCGAGATCATGATGAACTACCTGTGGTACAACATCAACGACGGGTA
CTCCTGGCACATCGCGGACCCCCTATCGGGGAGGTTCGAGGAGATATCGG
GACACGGCAGGCCACGGTGAGATGGGATGACCTTTGGGTATCTGTCTATC
TAGATGTGAGAGAGTCGATACATGTGCACATGTTATGTCCGGACACAGCA
ACAGAACAAGGGGTAAGATTGACTAATCTTCTGGTATATCTGTCTAGATG
TGAGAGAGGCGATAAGTTTGCGTATGTTATGTCGGGACTCAACAACAGAG
CAAGAGTTCGCGGTAAGATTGATTGATCCTCTGGTATCTAGATGTGAGAG
AGGCGATACACGTGCGCATGTTATGTCGGGACACAGCAACAGGCCGCGGT
GGGATTAGGGGATCAACTGATCTTCTGGTATCGATGTAGATGTGAGAGAC
GCGACCTATGATGTGTCTGGACACAACAACAGACCACGGGTGAGATGTAT
ATATTTTTTTCTGTTGTTGCCTTCACATTAAAAACCGTTCCGATCTCTCC
ATGTATCCAGTACTTCCATCAGTCCGTACTAATCCAACACCGACGCGGTC
GATTCCCGTGGTCACAGTGTAACTTACCCTGAAAAGGGTACACATACTGA
AAAATGAAAATAAATGAAATGGACCCGAAGGGTCAGCATGACAAAGCACA
AAATACAAAAGGTCAGACACAGATAGTCTAACCCTAAGCCTAACCTACAT
AATATGCTTTAAGGCGGAAGAGGGGTGAGTGAGCCTGCGGTAGGCTGTGC
AAGGCGTAGTACATAGCGCTCTCCGGTCTGTGTGCTCAATAGAAGTACAA
GGCGTGGCGTATGTTGTACCATGCACGCCGAATGCACGTAATTAGCTCCC
TCTCGACGACGCCAGAAGCAACGAAGGGGGACGATGTTGGTGTGCGAGGG
GGTAGGTGAGGGGGCACAGATGCATGCATTGTGTAGGCAATGGTCAAGGA
GGCAAGCTCCCAGCACTCTGATAAATTGTTATCCTTCTACCATTGCGGCT
GAGTGGCCTGACCGTTACAAGCGGTGGAATATCACGGGGTTCAAAGTAAA
AAGGAGGGGGGTCGGCTCCTTGTGGCTCCGCACCCAGAGCCTTGAAGGTC
CGTTTATCGAGGTGTTGGCGTGGGGCCAAAGACGTTGCCCCGTGAATAGC
AAAGGCACACCCCCACAACATATAGTTATCCCCTTTCCGTAGGGGTGATG
CCTATCGCACTCCACGACCCAAGCCTGCTCTGTGCCTGGCGAGCTCCGCG
TGAGACGGCCGCCTTTTGCAAGCGTGGCCTCGATGGTGCGTTCCGGACCG
GCGTGGGTTTGTTAACCGCACTGTTCGGCTCTTGCTGTGTGCTCTCTACT
TTGGTGCGTTGTGCTGCGAAAACTACACAAGACAAGACAGACGTCGCAAG
AAGGACACATCGAAGGAGAGGGCTTCGACCCACTCTACCACTCAGCATGG
CACCCCGGATGCCTCTGGGAGAGGAGGAAGAACCTCTGGCAGCAAGTGCT
CGAAGTTTATATGCCTTTCATCTACGCGGACAGCTGCGTAAATAGATATA
TCTCGCATGGGCGTCTCCTTACTTAACCCCCTTAGGGTCACAAGGCGTAT
GGGGCTGCTTTTTGGCCCCAAGTAACATGCCAACGTTTCGACCCCCTTTC
ACCACGCGACCCCAATTCCTTCTCTATTCAATAGGGATTCTAGAGTTGGG
ATCAGTCCCAGGGGGCTGTGAGTATGATCCAATCACAGCTCTGGAAAAAA
CAAAAAAGTGTTGGCGTCGTCAGGGGGTTCCGCAGCCGTCCTCGTTTGGA
CCGCCTACGCGCAGAGAGTCGTCAAATTCAGGTTCATATGTTGAATAGAG
TGAGGGGGTTCCGTAACCCTAACCCTAACCACGACCCCTCCCCCCATTCC
TCTGATTCCATACTTTATCCCATATGTTTTGCTGACTCAAAACCTGCGTA
GACTACCGTGTTTTTTACGCCGCGCGTGCTTTGCGATGATTTGCCCTCTG
ACCGCCATGTATGTATGCATGTTTGTACGTGTGTGTTGTTGCCGCCGAAA
GAGCGCTACCGAGGATGAAATCGATCAAGTCCCCTCACCTCTTGTCTAAT
GCTGCTGCTTTCTCTGCTTGCCTTTGGGGGCACTGCAAAAACTCTCTCTC
AAATCTCTCGGTTTGCCGAAGATTAAAAAAGCACTTTGACTTCTCTCGTA
TTTCAGTAAATTTTCAATCCGTTTCCACAAAGCACAGATTCAGAGACACC
CCGAATCTTACATTATGTATGTATGTGTGTGTTGTTGCCGCCAAAACAGC
GCTACAGAGGATGAGGCAGTGCTTGCTAGGAATGTCCCGACTGTCCTGCC
CATGAGACACATGGGGAAGGAGATCGACAGTGGTTCCATCGGCCCTTCCG
CCTTGTTTAAAAACCTGTGCTTCGGCAGCGGCTACAAGGTGCGTGGTTGT
TGTTATTGTGGTTGATATTGACAGTCCCGTGACAATTTCAGATAGATCTA
GCAAACAACTTGTCATACACGTACATATCATACTTGCGTGATGTCGAAAA
TACCGTACCTATTTAGTATATAATACTAATAGTTCGATGTATGTGGTCAC
CCTAACATTCGATTTGTCCGAAAGCATCCATGGAGGCCCGCGGTGACGAA
AACAGATCACACTCGACGCCGCTGTAGAAAAATTAAACACAGTAAGTAGT
TTTTGGTTAGGTTCCATTTTTGATTAACTGTTTTATTTTCACAATGCGTA
TTTTTAATTAACTGTTTTTCCTTTCAAAAAGTATGATACATACATAAGCG
CCACGCGAAATTTAGAAATTTACCTCTTTTTAGTTTTTTTTTAGGTATTT
ATCTAGTGCTCCAGACTATCTGTGTCGGACCTTTTGAAAGAGAAACAGAT
AATCAAAAATAGAATCTAACCCACATTGGAGACGAGACTCCCGTGAAATT
CCCACGGTATTATTCCATGTAGTGACCTAATATTGGTCCGGCCCAGTACA
AAAACACCTAAAATGTCGAAAAAGGTGTTTTGTGCTGTGTGGACCCTTCG
AGTCCATTTTATTTTGTCTATTTTTTCAGTAGACCCTTTTTAGGGTGAGT
TATCCTGTGACCACGGGAATCGGCATTTATTTGGAGACTCTAGGCTGGGT
TCTCCAGTGGTGGCGCGTTCTGTACCACCCGAATCGGCCTTCCACCCTTA
CATGATCTCCGCTTTCTTTGTATTTCGGACCGCCAGGCCGGTTACTGCAC
ATCGCGAGAGCCGACAGACCGAGACGGGTGGCCAATCACGGGATCGTGGA
CGGTGGGCGATACGACGTGGGAAAAAACATATCAGGATCACACCAGCAGC
GTGGCAAGAGCGCACCCGGCGTTCGACTGGCGGCGTGAAGCTCAAGAAGA
CTGGGTGCATCCTGGGGAGTAGTACTTCATGCTAGCAAATAAGAACTGAT
TGTAAGTGTCAAATGCTGCTGTGTGTTCCCGGCAACGGAATAATAATTTG
ATGGACCCTGGATCTTGTTGGGTATATATTGTTAAGCAGGTGGTGGGGGT
TTTGCTTTTTTGGCATTTTTTGACAACAAGAGTAAGTCGTATTTACCTAT
TTACACATTATGTGCAAGGTTGGGGTTCAGATGCATGATTTCCCTCTATG
ATACTACGGGTTCATTCGTGCCTCATGAGGTTATCGTAGGTGACACAAGA
TACCACTCCGCCCTGGACAATTTTTCAAAGCTCGATTTCTCCCCAGCAAG
ATGAATGCCAGTGCCGAAAAAGTCTCGTTTGGTGCTGGCACCCTCTTCGC
TACGGAGGAATCGAGCTTTGAAAATCTATTCGGGGGGGTCGTATCTCGTG
TCACCTACGGTATAGCACGTAGAAGTATACAGTATGTAGGAAACAGTTTT
TTGTTGTCTCTTTTTTGTTTACCAGATATAAGAGGATGTTGGGAACGCTT
TCTTCACCCGCATGTGGAACATTGTGAGTGTATTTTGGGGAGACGGGAGG
AAACTGTGGAGAATAGGAAACGCTCACCGGCTGGGCTCTACAAAACCCGC
TTCAGCTAGCTACGCACTGTGGTTTTGAACAAAGCAGTGCCAGTGGAAGG
TTTATTTACTTCAGGTTTCGTAGTCTAGATATAGTCTCGATTTGGACTAC
ATTTTTGTAATTGAGATTGTTTTTGTTTACTGCACGAAAGTTGTCTGCTG
CGGTTATTATATATAGTGTGGATGATGCATTATTTGTTGTTTTCTCTACA
TGTAGTTTATAGGAGGTTTTTTCGCGCGCGCAGAGCGCGAAAAAAAAAAT
GGAGCGATAGCGGAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8792:3447..7962+ >mRNA_L-elsbetiae_contig8792.17820.1 ID=mRNA_L-elsbetiae_contig8792.17820.1|Name=mRNA_L-elsbetiae_contig8792.17820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig8792:3447..7962+ (Laminarionema elsbetiae ELsaHSoW15) ATGACGAGGTACACGTTCCCGCTCGTCCTGAGATCGTCCCACCTGCGGGA GATGAGGGCGGGTATCGCGGGGAACCTGGGCGTAGCTACATTCGAGGAGG CGTTTCGAATGATCTGCTCCCAGGGGGCCGGCAGCTACTCCCAGTTCGAG ATCATGATGAACTACCTGTGGTACAACATCAACGACGGGTACTCCTGGCA CATCGCGGACCCCCTATCGGGGAGGTTCGAGGAGATATCGGGACACGGCA GGCCACGATGACGAGGTACACGTTCCCGCTCGTCCTGAGATCGTCCCACC TGCGGGAGATGAGGGCGGGTATCGCGGGGAACCTGGGCGTAGCTACATTC GAGGAGGCGTTTCGAATGATCTGCTCCCAGGGGGCCGGCAGCTACTCCCA GTTCGAGATCATGATGAACTACCTGTGGTACAACATCAACGACGGGTACT CCTGGCACATCGCGGACCCCCTATCGGGGAGGTTCGAGGAGATATCGGGA CACGGCAGGCCACGCGCTACAGAGGATGAGGCAGTGCTTGCTAGGAATGT CCCGACTGTCCTGCCCATGAGACACATGGGGAAGGAGATCGACAGTGGTT CCATCGGCCCTTCCGCCTTGTTTAAAAACCTGTGCTTCGGCAGCGGCTAC AAGCGCTACAGAGGATGAGGCAGTGCTTGCTAGGAATGTCCCGACTGTCC TGCCCATGAGACACATGGGGAAGGAGATCGACAGTGGTTCCATCGGCCCT TCCGCCTTGTTTAAAAACCTGTGCTTCGGCAGCGGCTACAAGGCCGGTTA CTGCACATCGCGAGAGCCGACAGACCGAGACGGGTGGCCAATCACGGGAT CGTGGACGGTGGGCGATACGACGTGGGAAAAAACATATCAGGATCACACC AGCAGCGTGGCAAGAGCGCACCCGGCGTTCGACTGGCGGCGTGAAGCTCA AGAAGACTGGGTGCATCCTGGGGAGTAGGCCGGTTACTGCACATCGCGAG AGCCGACAGACCGAGACGGGTGGCCAATCACGGGATCGTGGACGGTGGGC GATACGACGTGGGAAAAAACATATCAGGATCACACCAGCAGCGTGGCAAG AGCGCACCCGGCGTTCGACTGGCGGCGTGAAGCTCAAGAAGACTGGGTGC ATCCTGGGGAGTAG back to top
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