mRNA_L-elsbetiae_contig879.17819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 5.370e-148 Identity = 215/270 (79.63%), Postives = 235/270 (87.04%), Query Frame = 1
Query: 787 VIRAVGATYRCG-GDSTPIKSWSMRYTKTRRRPQPKTPVPGANKLTPAEEQAXXXXXXXXXKKEADRNPEPWKNNGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDLELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTAGFQPGTW 1593
+IR VG TY+ G G ST IKSWSMRYTKTRRRPQP +PGA +LTP E+QA KK+AD NPEPWKNNGVW+N+IVSFVVNGE+W++RERMYG LHHY +GSAHTK HMMGN+LADRILVD RVTE LSESTW+TTALHHGLQYGTQGPLTHPRN+RN+WTGLGAV TRDSVVAEG NMS LGADHADKKRW DLELPF DF+LNARLVLTRVMKKNDIPPDLHEA+FLSCI+HASDHTL HRIQWGKVFN DTT F+PGTW
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQP---LPGAKELTPTEKQAAVAAA----KKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE) HSP 1 Score: 233 bits (593), Expect = 7.130e-68 Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query: 787 VIRAVGATYRCG-GDSTPIKSWSMRYTKTRRRPQ---------------------------------PKTPVPGANKLTPAEEQAXXXXXXXXXKKEADRNPEPWKNNGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRN 1269
+IR VG TY+ G G ST IKSWSMRYTKTRRRPQ PK +PGA +LTPAE+QA KK+AD NPEPWKNNGVW+N+IVSFVVNGE+W++RERMYG LHHY +GSAHTK HMMGN+LADRILVD RVTE LSESTW+TTALHHGLQYGTQGPLTHPR+
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAA----KKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRH 191
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: UPI00160002B3 (uncharacterized protein LOC118410277 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160002B3) HSP 1 Score: 127 bits (320), Expect = 2.780e-28 Identity = 93/267 (34.83%), Postives = 139/267 (52.06%), Query Frame = 1
Query: 1006 NGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDL-ELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQ-----------WGKVFNCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
NGV Q+++F NG NR ++ ++ Y S HTKSH+ N+L R +VD+ V L ES++++ LH+ L + + L N +R+ G G V R+SVV E NMS L H +RW + F + +RL L VM+++DI P L +A+F I+H+ DH H I W K NC+T Y + ++ +R + T+P LNP N + KPFY LY+ LK +D K+A+ +TAS+MY
Sbjct: 118 NGV---QVLNFTRNGVDVTNRCEIFSTIYFYHIYSMHTKSHLFSNSLV-RHIVDNDV-HTLQESSYTSIPLHYELLHSSLSVLEWGGN-MSRYLGYGGVCIRESVVKESRNMSALEG-HQAVRRWNSHGKDSFAGKLFRSRLALQSVMERHDIAPKLLDALFNHTIVHSVDH---HGISEWSYLRFSLHPWDK--NCNT---------YQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-KMADVVTASVMY 362
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: A0A8K0F0A4_BRALA (Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0A4_BRALA) HSP 1 Score: 120 bits (301), Expect = 8.310e-26 Identity = 83/255 (32.55%), Postives = 130/255 (50.98%), Query Frame = 1
Query: 1006 NGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDLELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
NGV QI+ F NG+ +R +M+ ++ Y S HTKSH+ N+L R +VD+ V + L ES++++ LH+ L + + L N +++ G G R+S+V E NMS L A++ + F + +RL L VM ++ I P L +A+F I+H+ DH H + + + Y ++ +R + T+P LNP N I KPFY LY+ LK +DT A +TAS+MY
Sbjct: 117 NGV---QILHFTRNGDDVTDRSQMFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDV-KTLQESSYTSMPLHYVLLHSSLSVLMWDGN-MSQYLGYGDACIRESLVEESRNMSALDGHRAEEHWNSHGKDTFAGKLFRSRLALRDVMGRHGIDPTLLDALFNHTIVHSVDH---HGMSEWSCLRFSLHPWDKECSLYQALNTSVYRVLITQPNLNPLAPNTISSINKPFYQDLYRELKNIDT-SWAEVVTASVMY 361
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: UPI0016012D88 (uncharacterized protein LOC118409006 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016012D88) HSP 1 Score: 114 bits (284), Expect = 1.300e-23 Identity = 85/266 (31.95%), Postives = 137/266 (51.50%), Query Frame = 1
Query: 1006 NGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLG---ADHADKKRWVDLELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVF--------NCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
NGV Q++ F NG +R +++ ++ Y S HTKSH+ N+L R +VD+ V +AL ES++++ LH+ L + + L N +R+ G R+SVV E NMS + A H+ K D F +L +RL L V++++ I P L + +F I+H+ DH + +W +V +C T Y + ++ +R + T+P LNP N + KPFY LY+ LK +D ++A +TAS+MY
Sbjct: 114 NGV---QVLRFTRNGVEVSDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RHIVDNDV-KALQESSYTSIPLHYVLLHSSLSVLEWDGN-MSRYFRYGGACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRVRFSLHPWDKDCST---------YQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMAGVVTASVMY 358
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: A0A8J9ZEA8_BRALA (Hypp1061 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZEA8_BRALA) HSP 1 Score: 109 bits (272), Expect = 5.950e-22 Identity = 75/249 (30.12%), Postives = 130/249 (52.21%), Query Frame = 1
Query: 1027 IVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDLELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKV-FNCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
I+ F NG +R +++ ++ Y S HTKSH+ N+L R +VD+ + + L ES++++ ALH+ L + + N +++ G G R+S+V E NMS L + + F + +RL L MK+++I P L +A+F I+H+ DH +W + F+ A + Y + ++ +R + +P +NP N I +KPFY LY+ LK++D+ A+ +TAS+MY
Sbjct: 133 ILYFTRNGVEVDDRSQIFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDI-KTLKESSYTSIALHNELLHSSLSVFQFEGNV-SKYLGYGVAGIRESLVEESRNMSVLEGHQVMHRSNPHEKDSFVGKLYRSRLALQGAMKRHEIDPKLLDALFNHTIVHSVDHVSNS--EWSFLRFSLHPWA--EDCNIYQAFNTSMFRILIVQPNVNPLAPNTIRSIKKPFYQDLYRDLKKIDSHW-ADVVTASVMY 373
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: C3Z144_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z144_BRAFL) HSP 1 Score: 107 bits (267), Expect = 2.220e-21 Identity = 80/250 (32.00%), Postives = 121/250 (48.40%), Query Frame = 1
Query: 1024 QIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDLELPFPDFML-NARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
+I+ F NGE + +++ F Y S+H K H+ N+L R +VD R + L EST+++ LH+GL + PL N + + +G V TR+SV+ E NMS H +RW L + L +R L VMK++ + L E +F ++H+ DH ++ + G T Y + + +R M P LNP N + KPFY LY+ LK +D VA TAS+MY
Sbjct: 121 KILHFTRNGEEISDMSQIFSFWFFYGTLSSHAKCHLFSNSLV-RHIVD-RDLKTLQESTYTSIPLHYGLLHSPISPLQSDGNVSS-FLAVGVVGTRESVMKESKNMSAWEG-HQSGRRWDLLGQESLLYKLFRSRRALQGVMKRHGVDQKLLEPLFNHIVVHSMDHHGAYKSSHLRFSLHPWDTGC---TTYQAFNTNMFRVMLVRPNLNPPAPNTLRSINKPFYQDLYRELKNIDP-DVAEMATASVMY 362
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: D7G8N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.400e-21 Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1
Query: 1627 MWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIMY 1770
MW+EPTLNPFWNNKICRSR PFY QLYKGL+E+DTFKV+ NITASIMY
Sbjct: 1 MWSEPTLNPFWNNKICRSRNPFYRQLYKGLQEIDTFKVSKNITASIMY 48
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: C3Z6P0_BRAFL (DUF3504 domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6P0_BRAFL) HSP 1 Score: 110 bits (275), Expect = 4.490e-21 Identity = 83/265 (31.32%), Postives = 138/265 (52.08%), Query Frame = 1
Query: 1006 NGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLG---ADHADKKRWVDLELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVF--------NCDTTAGFQPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVDTFKVANNITASIM 1767
NGV Q++ F NG +R +++ ++ Y S HTKSH+ N+L R +VD+ V +AL ES++++ LH+ L + + L N +R+ G G R+SVV E NMS + A H+ K D F +L +RL L V++++ I P L + +F I+H+ DH + +W ++ +C T Y + ++ +R + T+P LNP N + KPFY LY+ LK +D ++A+ +TAS++
Sbjct: 114 NGV---QVLRFTRNGVEVSDRSQIFSTIYLYHIHSMHTKSHLFSNSLV-RHIVDNDV-KALQESSYTSIPLHYVLLHSSLSVLEWGGN-MSRYLGYGDACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRLRFSLHPWDKDCST---------YQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMADVVTASVI 357
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Match: UPI0015FFF7C7 (uncharacterized protein LOC118408656 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFF7C7) HSP 1 Score: 106 bits (265), Expect = 1.370e-20 Identity = 78/248 (31.45%), Postives = 123/248 (49.60%), Query Frame = 1
Query: 1006 NGVWDNQIVSFVVNGESWYNRERMYGFLHHYSAGSAHTKSHMMGNALADRILVDSRVTEALSESTWSTTALHHGLQYGTQGPLTHPRNDRNRWTGLGAVFTRDSVVAEGHNMSCLGADHADKKRWVDL-ELPFPDFMLNARLVLTRVMKKNDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTAGFQPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEVD 1728
NGV I+ F+ NG +R +++ ++ Y S HTKSH+ N+L R +V++ V + L ES++++ LH+ L + + L N +R+ G G R+S+V E NMS L H RW + F + +RL L VM+++ I P + +A+F I+H+ DH H I P TW Y + ++ +R + T+P LNP N + KPFY LY+ LK +D
Sbjct: 192 NGV---HILRFIRNGVEVTDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RNIVNNDV-KTLQESSYTSIPLHYQLLHSSLSVLEWDGN-MSRYLGYGDACIRESIVEESRNMSALEG-HQAVHRWNSHGKDSFAGKLFRSRLALQDVMERHGIDPKMLDALFNHTIVHSVDH---HGISERSFLR----FSLHPCTWDKDCSTYRAFNTSVFRVLITQPNLNPLAPNTLRFINKPFYQDLYRELKNID 425 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig879.17819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig879.17819.1 >prot_L-elsbetiae_contig879.17819.1 ID=prot_L-elsbetiae_contig879.17819.1|Name=mRNA_L-elsbetiae_contig879.17819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=493bp MCEDTEKKAESSAEPRGPTKKKESNRRRSLSPAPHPGAIPIKTGLWLEPHback to top mRNA from alignment at L-elsbetiae_contig879:631..10247+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig879.17819.1 ID=mRNA_L-elsbetiae_contig879.17819.1|Name=mRNA_L-elsbetiae_contig879.17819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9617bp|location=Sequence derived from alignment at L-elsbetiae_contig879:631..10247+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig879:631..10247+ >mRNA_L-elsbetiae_contig879.17819.1 ID=mRNA_L-elsbetiae_contig879.17819.1|Name=mRNA_L-elsbetiae_contig879.17819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2958bp|location=Sequence derived from alignment at L-elsbetiae_contig879:631..10247+ (Laminarionema elsbetiae ELsaHSoW15)back to top |