mRNA_L-elsbetiae_contig8786.17817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8786.17817.1
Unique NamemRNA_L-elsbetiae_contig8786.17817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8786.17817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8786contigL-elsbetiae_contig8786:5720..6094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8786.17817.1prot_L-elsbetiae_contig8786.17817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8786 5725..6045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.6469803-UTR-L-elsbetiae_contig8786:5719..57241622816957.6469803-UTR-L-elsbetiae_contig8786:5719..5724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8786 5720..5724 +
1691683940.962272-UTR-L-elsbetiae_contig8786:5719..57241691683940.962272-UTR-L-elsbetiae_contig8786:5719..5724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8786 5720..5724 +
1622816957.672436-UTR-L-elsbetiae_contig8786:6045..60941622816957.672436-UTR-L-elsbetiae_contig8786:6045..6094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8786 6046..6094 +
1691683940.9885573-UTR-L-elsbetiae_contig8786:6045..60941691683940.9885573-UTR-L-elsbetiae_contig8786:6045..6094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8786 6046..6094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.6583295-CDS-L-elsbetiae_contig8786:5724..60451622816957.6583295-CDS-L-elsbetiae_contig8786:5724..6045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8786 5725..6045 +
1691683940.9741771-CDS-L-elsbetiae_contig8786:5724..60451691683940.9741771-CDS-L-elsbetiae_contig8786:5724..6045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8786 5725..6045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8786.17817.1

>prot_L-elsbetiae_contig8786.17817.1 ID=prot_L-elsbetiae_contig8786.17817.1|Name=mRNA_L-elsbetiae_contig8786.17817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MQPQTKGGTQGHFPFDKYIHRSSAPLVNLSRLRTYVFSVFRTEVKAPVYN
RFLDETMFATTQASYICETHLCILSLNSDLSHPATINRGATSAYTPPTSE
LVLWYI*
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mRNA from alignment at L-elsbetiae_contig8786:5720..6094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8786.17817.1 ID=mRNA_L-elsbetiae_contig8786.17817.1|Name=mRNA_L-elsbetiae_contig8786.17817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig8786:5720..6094+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACATGCAGCCTCAGACAAAGGGGGGGACCCAAGGGCATTTTCCCTTC
GATAAATATATACACAGGTCGTCAGCACCCCTGGTCAATCTGTCTAGACT
ACGTACATATGTATTTAGTGTATTCCGGACGGAAGTTAAAGCACCCGTTT
ACAATCGATTCCTAGATGAAACGATGTTTGCCACAACGCAAGCATCATAT
ATTTGTGAAACACATCTATGTATCCTCTCTCTGAACAGCGATCTTTCCCA
CCCCGCAACAATTAATCGTGGTGCCACTTCTGCATACACGCCTCCAACTT
CTGAGCTCGTTCTGTGGTACATATAGTCTATAGTGCCTAGCTTCGAAGCG
ATGCAGCAGCTGATTCTGACGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8786:5720..6094+

>mRNA_L-elsbetiae_contig8786.17817.1 ID=mRNA_L-elsbetiae_contig8786.17817.1|Name=mRNA_L-elsbetiae_contig8786.17817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig8786:5720..6094+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCCTCAGACAAAGGGGGGGACCCAAGGGCATTTTCCCTTCGATAA
ATATATACACAGGTCGTCAGCACCCCTGGTCAATCTGTCTAGACTACGTA
CATATGTATTTAGTGTATTCCGGACGGAAGTTAAAGCACCCGTTTACAAT
CGATTCCTAGATGAAACGATGTTTGCCACAACGCAAGCATCATATATTTG
TGAAACACATCTATGTATCCTCTCTCTGAACAGCGATCTTTCCCACCCCG
CAACAATTAATCGTGGTGCCACTTCTGCATACACGCCTCCAACTTCTGAG
CTCGTTCTGTGGTACATATAGATGCAGCCTCAGACAAAGGGGGGGACCCA
AGGGCATTTTCCCTTCGATAAATATATACACAGGTCGTCAGCACCCCTGG
TCAATCTGTCTAGACTACGTACATATGTATTTAGTGTATTCCGGACGGAA
GTTAAAGCACCCGTTTACAATCGATTCCTAGATGAAACGATGTTTGCCAC
AACGCAAGCATCATATATTTGTGAAACACATCTATGTATCCTCTCTCTGA
ACAGCGATCTTTCCCACCCCGCAACAATTAATCGTGGTGCCACTTCTGCA
TACACGCCTCCAACTTCTGAGCTCGTTCTGTGGTACATATAG
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