mRNA_L-elsbetiae_contig8776.17811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8776.17811.1
Unique NamemRNA_L-elsbetiae_contig8776.17811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8776.17811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8776contigL-elsbetiae_contig8776:4415..6677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000740.1
Exons2
Model size1779
Cds size1779
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.0603387-CDS-L-elsbetiae_contig8776:4414..49931622816957.0603387-CDS-L-elsbetiae_contig8776:4414..4993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 4415..4993 -
1691683940.4999313-CDS-L-elsbetiae_contig8776:4414..49931691683940.4999313-CDS-L-elsbetiae_contig8776:4414..4993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 4415..4993 -
1622816957.0718644-CDS-L-elsbetiae_contig8776:5477..66771622816957.0718644-CDS-L-elsbetiae_contig8776:5477..6677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 5478..6677 -
1691683940.5107718-CDS-L-elsbetiae_contig8776:5477..66771691683940.5107718-CDS-L-elsbetiae_contig8776:5477..6677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8776 5478..6677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8776.17811.1prot_L-elsbetiae_contig8776.17811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8776 4415..6677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8776.17811.1

>prot_L-elsbetiae_contig8776.17811.1 ID=prot_L-elsbetiae_contig8776.17811.1|Name=mRNA_L-elsbetiae_contig8776.17811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=593bp
TVAVNNKPNTAEHIAEASLPLRSCGGEDWPSTPDSKLLHSELEDEEEETG
YFTEGQDTAAGDDNSNGASSRNRSVPGAAYGPTCTLQAGRHEGGLTGSAP
GTNDTISELSCSGIFTIPSAVGDDQGNEDPDSDESTHDSSSESPNQTRVA
SPRDDDDIGASHVEHLMQERRRWKLRAFESEHELAAVRSLHARFEKRDGA
RAMGPQSPEATMFQASGSFSEPMVSETSSVESGFELDHRWQTASGSDGAS
SASSRFTAGGPSVARGGRQHGFLDTASDAQFSGGVSATANDLQASGAQRD
APDLESYRQNRLADDDDSCDGRGKDGVTEKQIEGAGDGDHRGEQGTDAAR
TNRLLREEIAELKENLRRAELRHAAAEATAASVLQRARAAELARDVMEIQ
IRNLEIRLERYTNDNKHHKEACARWKERQHFGEDESADGGIKLDLIRPRM
EPPLPTVVEEGEEGVRPYERIRNESGCPPLAVESREPTDAVSEAPSDKEV
VGGLATGGRRAALDRFRHGCLVLGAKAARAGGGAISVAAAVASEAAKEAV
QTAKAAVRAGGEREAADDQRLRGETDERDFEEYWGSDYCTSA*
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mRNA from alignment at L-elsbetiae_contig8776:4415..6677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8776.17811.1 ID=mRNA_L-elsbetiae_contig8776.17811.1|Name=mRNA_L-elsbetiae_contig8776.17811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2263bp|location=Sequence derived from alignment at L-elsbetiae_contig8776:4415..6677- (Laminarionema elsbetiae ELsaHSoW15)
ACCGTTGCGGTCAACAACAAGCCTAACACTGCGGAACATATAGCCGAAGC
GAGCTTGCCCCTGCGGTCATGCGGAGGCGAAGATTGGCCATCTACCCCCG
ATAGCAAACTCTTGCACTCGGAGCTTGAAGACGAAGAAGAAGAGACCGGT
TATTTCACTGAAGGTCAAGACACTGCCGCCGGGGACGACAACTCGAATGG
AGCTAGTAGCAGAAACAGGAGTGTACCTGGCGCGGCCTACGGTCCTACGT
GCACCTTACAGGCTGGTCGCCACGAAGGCGGTTTGACGGGGTCCGCGCCG
GGGACCAATGACACCATATCCGAGCTCTCTTGCTCGGGGATCTTTACCAT
CCCCAGCGCGGTCGGTGACGACCAAGGAAATGAAGATCCGGATAGTGACG
AAAGTACTCACGATTCGTCCAGCGAGTCACCGAATCAGACTCGAGTTGCG
AGTCCTCGCGACGACGACGATATTGGTGCTAGCCATGTAGAACATCTCAT
GCAAGAAAGACGCCGTTGGAAGCTAAGAGCTTTCGAATCGGAGCACGAGC
TAGCTGCTGTTCGATCATTGCACGCCCGTTTTGAGAAGAGGGACGGTGCG
AGAGCGATGGGGCCGCAGTCGCCAGAGGCAACCATGTTCCAAGCGTCGGG
ATCCTTCAGTGAACCGATGGTATCCGAAACGTCGTCGGTTGAGTCCGGGT
TCGAACTCGACCACCGTTGGCAAACAGCAAGTGGAAGTGACGGAGCGTCA
TCGGCCTCGTCACGCTTCACGGCCGGCGGGCCAAGCGTGGCGCGGGGGGG
TCGACAGCATGGCTTTTTAGACACGGCGAGCGACGCCCAGTTCTCGGGAG
GAGTATCGGCTACAGCCAACGACCTGCAAGCGAGTGGAGCCCAACGCGAT
GCACCAGATCTTGAAAGCTATCGCCAAAACCGGCTTGCGGATGATGATGA
CAGTTGTGATGGGCGAGGCAAGGACGGGGTCACTGAGAAGCAGATCGAAG
GTGCGGGTGATGGCGACCACCGTGGTGAGCAAGGCACGGACGCAGCTCGT
ACCAATCGGCTGCTTCGGGAAGAGATCGCGGAGCTTAAGGAAAACCTTCG
GAGGGCCGAGCTTCGGCACGCAGCAGCAGAGGCTACTGCCGCAAGCGTCC
TACAGAGAGCCCGAGCTGCAGAGCTGGCACGTGACGTTATGGAGATCCAG
GTCAGAGAATATTTGAGAACTCTTGAAGCTCAGAACGGTTGGGGGGGGGC
AGACCTACCACGCACATTCTTCTCCTCACAGTCAGTGGGACTTTGAAGGA
TGTCGATGTAGAAAAGCCGAAAATGTGCGGTAAAAGCTCAAGAGGGGGCT
TGCCCCCGTTGTTTGGGCGGGGGCGTCGGCGATTGTCTCAGGTATCTCAC
AAAACAACCGTTTCGGTCGAACGTAGTCATTTTTCTCAGCAACAGACAAA
TGCATTTACCCAGCAATATTGTTTGCACCTTGTACCGTAAGATATACTTC
TAAATATGTAGCCGGGTTTTGAGGGGGGTAGCATGTGTTTATGTTTTTAG
TGATAAACATAATAAAGAGCTCAGCATTTCAATAACTCCGTGTTGTCTGG
TATGTAGGTCACCGAAACCACAGATGCCTACTGTATTTATGTCGTGACAC
CTTTTGTTTTTGCCCATTCTTCGCGCTCAAGTAGATCCGCAACCTCGAGA
TTCGACTTGAAAGATACACAAACGACAACAAGCACCACAAAGAGGCGTGT
GCCCGATGGAAAGAACGACAACACTTCGGTGAGGATGAGAGCGCAGATGG
TGGCATCAAGCTGGACTTGATTCGACCGCGTATGGAACCACCGTTGCCTA
CCGTGGTAGAAGAAGGGGAGGAAGGGGTGCGGCCATACGAACGCATTCGA
AACGAGAGCGGGTGCCCACCATTGGCCGTTGAAAGTCGTGAACCAACTGA
TGCTGTGTCTGAGGCACCCAGCGATAAAGAAGTTGTTGGTGGTCTCGCAA
CGGGTGGTCGGCGGGCAGCGCTAGATCGTTTCCGCCATGGCTGCTTGGTT
CTCGGGGCGAAGGCGGCTCGGGCGGGGGGGGGCGCGATATCGGTGGCAGC
AGCGGTCGCAAGCGAAGCCGCTAAGGAGGCCGTGCAAACCGCCAAGGCGG
CCGTAAGGGCGGGCGGGGAACGTGAGGCGGCGGACGACCAGCGCTTACGA
GGCGAAACAGACGAGCGTGATTTTGAGGAGTATTGGGGTAGTGACTATTG
CACATCGGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8776:4415..6677-

>mRNA_L-elsbetiae_contig8776.17811.1 ID=mRNA_L-elsbetiae_contig8776.17811.1|Name=mRNA_L-elsbetiae_contig8776.17811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3558bp|location=Sequence derived from alignment at L-elsbetiae_contig8776:4415..6677- (Laminarionema elsbetiae ELsaHSoW15)
ACCGTTGCGGTCAACAACAAGCCTAACACTGCGGAACATATAGCCGAAGC
GAGCTTGCCCCTGCGGTCATGCGGAGGCGAAGATTGGCCATCTACCCCCG
ATAGCAAACTCTTGCACTCGGAGCTTGAAGACGAAGAAGAAGAGACCGGT
TATTTCACTGAAGGTCAAGACACTGCCGCCGGGGACGACAACTCGAATGG
AGCTAGTAGCAGAAACAGGAGTGTACCTGGCGCGGCCTACGGTCCTACGT
GCACCTTACAGGCTGGTCGCCACGAAGGCGGTTTGACGGGGTCCGCGCCG
GGGACCAATGACACCATATCCGAGCTCTCTTGCTCGGGGATCTTTACCAT
CCCCAGCGCGGTCGGTGACGACCAAGGAAATGAAGATCCGGATAGTGACG
AAAGTACTCACGATTCGTCCAGCGAGTCACCGAATCAGACTCGAGTTGCG
AGTCCTCGCGACGACGACGATATTGGTGCTAGCCATGTAGAACATCTCAT
GCAAGAAAGACGCCGTTGGAAGCTAAGAGCTTTCGAATCGGAGCACGAGC
TAGCTGCTGTTCGATCATTGCACGCCCGTTTTGAGAAGAGGGACGGTGCG
AGAGCGATGGGGCCGCAGTCGCCAGAGGCAACCATGTTCCAAGCGTCGGG
ATCCTTCAGTGAACCGATGGTATCCGAAACGTCGTCGGTTGAGTCCGGGT
TCGAACTCGACCACCGTTGGCAAACAGCAAGTGGAAGTGACGGAGCGTCA
TCGGCCTCGTCACGCTTCACGGCCGGCGGGCCAAGCGTGGCGCGGGGGGG
TCGACAGCATGGCTTTTTAGACACGGCGAGCGACGCCCAGTTCTCGGGAG
GAGTATCGGCTACAGCCAACGACCTGCAAGCGAGTGGAGCCCAACGCGAT
GCACCAGATCTTGAAAGCTATCGCCAAAACCGGCTTGCGGATGATGATGA
CAGTTGTGATGGGCGAGGCAAGGACGGGGTCACTGAGAAGCAGATCGAAG
GTGCGGGTGATGGCGACCACCGTGGTGAGCAAGGCACGGACGCAGCTCGT
ACCAATCGGCTGCTTCGGGAAGAGATCGCGGAGCTTAAGGAAAACCTTCG
GAGGGCCGAGCTTCGGCACGCAGCAGCAGAGGCTACTGCCGCAAGCGTCC
TACAGAGAGCCCGAGCTGCAGAGCTGGCACGTGACGTTATGGAGATCCAG
ACCGTTGCGGTCAACAACAAGCCTAACACTGCGGAACATATAGCCGAAGC
GAGCTTGCCCCTGCGGTCATGCGGAGGCGAAGATTGGCCATCTACCCCCG
ATAGCAAACTCTTGCACTCGGAGCTTGAAGACGAAGAAGAAGAGACCGGT
TATTTCACTGAAGGTCAAGACACTGCCGCCGGGGACGACAACTCGAATGG
AGCTAGTAGCAGAAACAGGAGTGTACCTGGCGCGGCCTACGGTCCTACGT
GCACCTTACAGGCTGGTCGCCACGAAGGCGGTTTGACGGGGTCCGCGCCG
GGGACCAATGACACCATATCCGAGCTCTCTTGCTCGGGGATCTTTACCAT
CCCCAGCGCGGTCGGTGACGACCAAGGAAATGAAGATCCGGATAGTGACG
AAAGTACTCACGATTCGTCCAGCGAGTCACCGAATCAGACTCGAGTTGCG
AGTCCTCGCGACGACGACGATATTGGTGCTAGCCATGTAGAACATCTCAT
GCAAGAAAGACGCCGTTGGAAGCTAAGAGCTTTCGAATCGGAGCACGAGC
TAGCTGCTGTTCGATCATTGCACGCCCGTTTTGAGAAGAGGGACGGTGCG
AGAGCGATGGGGCCGCAGTCGCCAGAGGCAACCATGTTCCAAGCGTCGGG
ATCCTTCAGTGAACCGATGGTATCCGAAACGTCGTCGGTTGAGTCCGGGT
TCGAACTCGACCACCGTTGGCAAACAGCAAGTGGAAGTGACGGAGCGTCA
TCGGCCTCGTCACGCTTCACGGCCGGCGGGCCAAGCGTGGCGCGGGGGGG
TCGACAGCATGGCTTTTTAGACACGGCGAGCGACGCCCAGTTCTCGGGAG
GAGTATCGGCTACAGCCAACGACCTGCAAGCGAGTGGAGCCCAACGCGAT
GCACCAGATCTTGAAAGCTATCGCCAAAACCGGCTTGCGGATGATGATGA
CAGTTGTGATGGGCGAGGCAAGGACGGGGTCACTGAGAAGCAGATCGAAG
GTGCGGGTGATGGCGACCACCGTGGTGAGCAAGGCACGGACGCAGCTCGT
ACCAATCGGCTGCTTCGGGAAGAGATCGCGGAGCTTAAGGAAAACCTTCG
GAGGGCCGAGCTTCGGCACGCAGCAGCAGAGGCTACTGCCGCAAGCGTCC
TACAGAGAGCCCGAGCTGCAGAGCTGGCACGTGACGTTATGGAGATCCAG
ATCCGCAACCTCGAGATTCGACTTGAAAGATACACAAACGACAACAAGCA
CCACAAAGAGGCGTGTGCCCGATGGAAAGAACGACAACACTTCGGTGAGG
ATGAGAGCGCAGATGGTGGCATCAAGCTGGACTTGATTCGACCGCGTATG
GAACCACCGTTGCCTACCGTGGTAGAAGAAGGGGAGGAAGGGGTGCGGCC
ATACGAACGCATTCGAAACGAGAGCGGGTGCCCACCATTGGCCGTTGAAA
GTCGTGAACCAACTGATGCTGTGTCTGAGGCACCCAGCGATAAAGAAGTT
GTTGGTGGTCTCGCAACGGGTGGTCGGCGGGCAGCGCTAGATCGTTTCCG
CCATGGCTGCTTGGTTCTCGGGGCGAAGGCGGCTCGGGCGGGGGGGGGCG
CGATATCGGTGGCAGCAGCGGTCGCAAGCGAAGCCGCTAAGGAGGCCGTG
CAAACCGCCAAGGCGGCCGTAAGGGCGGGCGGGGAACGTGAGGCGGCGGA
CGACCAGCGCTTACGAGGCGAAACAGACGAGCGTGATTTTGAGGAGTATT
GGGGTAGTGACTATTGCACATCGGCGTGAATCCGCAACCTCGAGATTCGA
CTTGAAAGATACACAAACGACAACAAGCACCACAAAGAGGCGTGTGCCCG
ATGGAAAGAACGACAACACTTCGGTGAGGATGAGAGCGCAGATGGTGGCA
TCAAGCTGGACTTGATTCGACCGCGTATGGAACCACCGTTGCCTACCGTG
GTAGAAGAAGGGGAGGAAGGGGTGCGGCCATACGAACGCATTCGAAACGA
GAGCGGGTGCCCACCATTGGCCGTTGAAAGTCGTGAACCAACTGATGCTG
TGTCTGAGGCACCCAGCGATAAAGAAGTTGTTGGTGGTCTCGCAACGGGT
GGTCGGCGGGCAGCGCTAGATCGTTTCCGCCATGGCTGCTTGGTTCTCGG
GGCGAAGGCGGCTCGGGCGGGGGGGGGCGCGATATCGGTGGCAGCAGCGG
TCGCAAGCGAAGCCGCTAAGGAGGCCGTGCAAACCGCCAAGGCGGCCGTA
AGGGCGGGCGGGGAACGTGAGGCGGCGGACGACCAGCGCTTACGAGGCGA
AACAGACGAGCGTGATTTTGAGGAGTATTGGGGTAGTGACTATTGCACAT
CGGCGTGA
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