mRNA_L-elsbetiae_contig8762.17802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8762.17802.1
Unique NamemRNA_L-elsbetiae_contig8762.17802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8762.17802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8762contigL-elsbetiae_contig8762:6377..8376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1448
Cds size1446
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816956.3101897-CDS-L-elsbetiae_contig8762:6378..65231622816956.3101897-CDS-L-elsbetiae_contig8762:6378..6523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8762 6379..6523 -
1691683939.941877-CDS-L-elsbetiae_contig8762:6378..65231691683939.941877-CDS-L-elsbetiae_contig8762:6378..6523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8762 6379..6523 -
1622816956.3234394-CDS-L-elsbetiae_contig8762:7075..83761622816956.3234394-CDS-L-elsbetiae_contig8762:7075..8376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8762 7076..8376 -
1691683939.9536426-CDS-L-elsbetiae_contig8762:7075..83761691683939.9536426-CDS-L-elsbetiae_contig8762:7075..8376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8762 7076..8376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8762.17802.1prot_L-elsbetiae_contig8762.17802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8762 6379..8376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8762.17802.1

>prot_L-elsbetiae_contig8762.17802.1 ID=prot_L-elsbetiae_contig8762.17802.1|Name=mRNA_L-elsbetiae_contig8762.17802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=482bp
LNGSAEALNGSAATVSANTIAFGATSAAAATGDTLNGSAAPVSANTIAFG
ATSAAASTGGTLNGSAAPVSANTVAFGATPAAASAGGAGGRGTPNGDAAP
HIAHADAHAAAGPSGSLNGNAPALNVNGVNVAVGLGATPVHVEVSSSPHV
GNNGDASRVNGSREPVHSTAQNFGAMGAAGVGGRSGSGGSGGGESRALNG
FGHDHLGGKERVGTFGPVAFGSFPERPQQPALKQPQEQQQQYQQHQQQQH
QNPCVADVAAAAAAGSMHRPTRAGIDNRLEEPTPRHERLPAEDGFPPANA
PQQPSRPHDDQQQQPTRQQKEQQQAQAHLHNLLQQHQQESTNRAESASQQ
AARAAGGGYDSFDTLRMFGPTAAPAARAPGVREGGVNGHRKPLPPSGDDG
KSQTTTRKAAAPSINGGAPSSGSPVHSKKEQPKSAKPRKPLPTPRYGRYI
PEGSPPRSPTASLPPQGSTAGVSSSSLFSSAT
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mRNA from alignment at L-elsbetiae_contig8762:6377..8376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8762.17802.1 ID=mRNA_L-elsbetiae_contig8762.17802.1|Name=mRNA_L-elsbetiae_contig8762.17802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2000bp|location=Sequence derived from alignment at L-elsbetiae_contig8762:6377..8376- (Laminarionema elsbetiae ELsaHSoW15)
CTCAATGGCAGTGCTGAAGCTCTGAACGGCAGTGCTGCTACGGTCTCGGC
CAACACTATCGCCTTCGGTGCCACATCTGCTGCCGCTGCTACTGGCGACA
CTCTCAACGGCAGTGCTGCTCCGGTCTCGGCCAACACTATCGCCTTCGGT
GCCACATCTGCTGCCGCTTCTACTGGTGGTACTCTCAACGGCAGTGCTGC
TCCGGTCTCGGCCAACACTGTCGCCTTCGGCGCCACACCTGCTGCCGCTT
CTGCTGGCGGAGCCGGTGGGCGCGGTACTCCCAACGGCGATGCTGCCCCC
CACATCGCCCATGCCGATGCCCACGCTGCCGCCGGTCCTTCTGGTTCCCT
CAACGGCAATGCTCCTGCCCTCAACGTCAATGGTGTGAATGTCGCCGTGG
GACTGGGTGCCACCCCGGTGCACGTCGAGGTTAGTAGCAGTCCTCACGTC
GGCAACAACGGCGACGCCAGCAGGGTCAACGGCAGCAGGGAGCCTGTGCA
CTCGACGGCGCAGAATTTCGGTGCTATGGGCGCTGCAGGGGTTGGAGGTA
GAAGCGGCAGCGGCGGCAGCGGCGGCGGCGAGAGCAGGGCTTTGAATGGG
TTTGGGCACGACCACCTCGGGGGAAAGGAAAGGGTGGGCACGTTTGGCCC
TGTTGCGTTTGGTAGCTTTCCAGAGCGGCCGCAGCAGCCGGCGTTGAAGC
AACCGCAGGAGCAGCAGCAGCAGTACCAGCAGCACCAGCAGCAGCAGCAC
CAGAATCCCTGTGTAGCGGATGTGGCGGCGGCGGCGGCTGCTGGCTCAAT
GCACAGACCGACGCGTGCAGGCATCGACAACCGGCTCGAAGAGCCGACGC
CACGGCACGAGCGTCTCCCAGCAGAGGACGGATTTCCCCCCGCCAACGCC
CCGCAGCAACCGAGTCGGCCACACGACGATCAGCAGCAGCAGCCAACCCG
GCAGCAGAAGGAGCAGCAGCAGGCGCAAGCGCACTTGCACAACCTTCTGC
AGCAGCACCAGCAGGAGAGCACCAACCGCGCCGAGTCCGCGTCGCAGCAA
GCAGCCAGGGCCGCCGGCGGCGGCTACGACTCGTTCGACACGCTGCGAAT
GTTCGGGCCTACCGCCGCCCCTGCGGCAAGGGCGCCCGGGGTCAGAGAGG
GCGGCGTGAACGGTCACAGAAAACCTTTACCCCCCAGCGGCGACGATGGG
AAGTCACAGACGACGACGCGGAAGGCGGCGGCACCGTCGATCAACGGGGG
GGCACCGTCGTCGGGTTCGCCGGTGCACTCCAAGAAGGAGCAGCCCAAGA
GGTGAGCACTTGAAGTGCATTTGTTGTGTTGCTTGCGGCCGGGGGGCTAA
GGTACGAAAAGGAGGTGGCCAGCCCAAATCTTTTGTTACGCGTAGATGGA
CGGACGCACTTTTTTGCTTTACGGTGGTGGGTTTTCGGGCGCTCACCAGG
AGAGGTGAGAGGTGTCCCGAGGCGTGTTGTTTGCCTCTGTTCGAGATTGG
TTTTTCGGGCTTTGTTCGTGATTAGATGGACATTGTGAACTGTTTTTCTC
TGGCGTTGGCAATTGGTCTGCCGTGTTCTGGCGGGACGGACATTGTGAGC
TGTTTTCTCTGACGATGGCATCGGTTGCTGCCGGTCGTCGTCTTATTCCT
CGCTTTTGTGGTCCGTTCCGGAGCGTTCTGTCCTGGTCGGGGTCAAGTGG
GGTTTATTGTTTATTTCGTGCAGGCCGGTAGAAGCGGTGCATGTGATGGA
GACATACATGGAAGAGTGTCCTTCCTGATGCTTGACGAATGTATCCTGCC
CCGTCGCTGCCCCCCCGCCCCCCCGCCCCCCATGCTGTAATCTCTCCTCG
CAGTGCGAAGCCAAGAAAACCCCTGCCGACGCCGCGCTACGGCCGCTACA
TCCCGGAAGGCTCGCCGCCGAGATCGCCGACCGCGTCGCTGCCACCGCAG
GGCTCGACGGCGGGGGTGTCATCGTCGTCGTTGTTCTCCTCGGCGACGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8762:6377..8376-

>mRNA_L-elsbetiae_contig8762.17802.1 ID=mRNA_L-elsbetiae_contig8762.17802.1|Name=mRNA_L-elsbetiae_contig8762.17802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2892bp|location=Sequence derived from alignment at L-elsbetiae_contig8762:6377..8376- (Laminarionema elsbetiae ELsaHSoW15)
CTCAATGGCAGTGCTGAAGCTCTGAACGGCAGTGCTGCTACGGTCTCGGC
CAACACTATCGCCTTCGGTGCCACATCTGCTGCCGCTGCTACTGGCGACA
CTCTCAACGGCAGTGCTGCTCCGGTCTCGGCCAACACTATCGCCTTCGGT
GCCACATCTGCTGCCGCTTCTACTGGTGGTACTCTCAACGGCAGTGCTGC
TCCGGTCTCGGCCAACACTGTCGCCTTCGGCGCCACACCTGCTGCCGCTT
CTGCTGGCGGAGCCGGTGGGCGCGGTACTCCCAACGGCGATGCTGCCCCC
CACATCGCCCATGCCGATGCCCACGCTGCCGCCGGTCCTTCTGGTTCCCT
CAACGGCAATGCTCCTGCCCTCAACGTCAATGGTGTGAATGTCGCCGTGG
GACTGGGTGCCACCCCGGTGCACGTCGAGGTTAGTAGCAGTCCTCACGTC
GGCAACAACGGCGACGCCAGCAGGGTCAACGGCAGCAGGGAGCCTGTGCA
CTCGACGGCGCAGAATTTCGGTGCTATGGGCGCTGCAGGGGTTGGAGGTA
GAAGCGGCAGCGGCGGCAGCGGCGGCGGCGAGAGCAGGGCTTTGAATGGG
TTTGGGCACGACCACCTCGGGGGAAAGGAAAGGGTGGGCACGTTTGGCCC
TGTTGCGTTTGGTAGCTTTCCAGAGCGGCCGCAGCAGCCGGCGTTGAAGC
AACCGCAGGAGCAGCAGCAGCAGTACCAGCAGCACCAGCAGCAGCAGCAC
CAGAATCCCTGTGTAGCGGATGTGGCGGCGGCGGCGGCTGCTGGCTCAAT
GCACAGACCGACGCGTGCAGGCATCGACAACCGGCTCGAAGAGCCGACGC
CACGGCACGAGCGTCTCCCAGCAGAGGACGGATTTCCCCCCGCCAACGCC
CCGCAGCAACCGAGTCGGCCACACGACGATCAGCAGCAGCAGCCAACCCG
GCAGCAGAAGGAGCAGCAGCAGGCGCAAGCGCACTTGCACAACCTTCTGC
AGCAGCACCAGCAGGAGAGCACCAACCGCGCCGAGTCCGCGTCGCAGCAA
GCAGCCAGGGCCGCCGGCGGCGGCTACGACTCGTTCGACACGCTGCGAAT
GTTCGGGCCTACCGCCGCCCCTGCGGCAAGGGCGCCCGGGGTCAGAGAGG
GCGGCGTGAACGGTCACAGAAAACCTTTACCCCCCAGCGGCGACGATGGG
AAGTCACAGACGACGACGCGGAAGGCGGCGGCACCGTCGATCAACGGGGG
GGCACCGTCGTCGGGTTCGCCGGTGCACTCCAAGAAGGAGCAGCCCAAGA
GCTCAATGGCAGTGCTGAAGCTCTGAACGGCAGTGCTGCTACGGTCTCGG
CCAACACTATCGCCTTCGGTGCCACATCTGCTGCCGCTGCTACTGGCGAC
ACTCTCAACGGCAGTGCTGCTCCGGTCTCGGCCAACACTATCGCCTTCGG
TGCCACATCTGCTGCCGCTTCTACTGGTGGTACTCTCAACGGCAGTGCTG
CTCCGGTCTCGGCCAACACTGTCGCCTTCGGCGCCACACCTGCTGCCGCT
TCTGCTGGCGGAGCCGGTGGGCGCGGTACTCCCAACGGCGATGCTGCCCC
CCACATCGCCCATGCCGATGCCCACGCTGCCGCCGGTCCTTCTGGTTCCC
TCAACGGCAATGCTCCTGCCCTCAACGTCAATGGTGTGAATGTCGCCGTG
GGACTGGGTGCCACCCCGGTGCACGTCGAGGTTAGTAGCAGTCCTCACGT
CGGCAACAACGGCGACGCCAGCAGGGTCAACGGCAGCAGGGAGCCTGTGC
ACTCGACGGCGCAGAATTTCGGTGCTATGGGCGCTGCAGGGGTTGGAGGT
AGAAGCGGCAGCGGCGGCAGCGGCGGCGGCGAGAGCAGGGCTTTGAATGG
GTTTGGGCACGACCACCTCGGGGGAAAGGAAAGGGTGGGCACGTTTGGCC
CTGTTGCGTTTGGTAGCTTTCCAGAGCGGCCGCAGCAGCCGGCGTTGAAG
CAACCGCAGGAGCAGCAGCAGCAGTACCAGCAGCACCAGCAGCAGCAGCA
CCAGAATCCCTGTGTAGCGGATGTGGCGGCGGCGGCGGCTGCTGGCTCAA
TGCACAGACCGACGCGTGCAGGCATCGACAACCGGCTCGAAGAGCCGACG
CCACGGCACGAGCGTCTCCCAGCAGAGGACGGATTTCCCCCCGCCAACGC
CCCGCAGCAACCGAGTCGGCCACACGACGATCAGCAGCAGCAGCCAACCC
GGCAGCAGAAGGAGCAGCAGCAGGCGCAAGCGCACTTGCACAACCTTCTG
CAGCAGCACCAGCAGGAGAGCACCAACCGCGCCGAGTCCGCGTCGCAGCA
AGCAGCCAGGGCCGCCGGCGGCGGCTACGACTCGTTCGACACGCTGCGAA
TGTTCGGGCCTACCGCCGCCCCTGCGGCAAGGGCGCCCGGGGTCAGAGAG
GGCGGCGTGAACGGTCACAGAAAACCTTTACCCCCCAGCGGCGACGATGG
GAAGTCACAGACGACGACGCGGAAGGCGGCGGCACCGTCGATCAACGGGG
GGGCACCGTCGTCGGGTTCGCCGGTGCACTCCAAGAAGGAGCAGCCCAAG
AGTGCGAAGCCAAGAAAACCCCTGCCGACGCCGCGCTACGGCCGCTACAT
CCCGGAAGGCTCGCCGCCGAGATCGCCGACCGCGTCGCTGCCACCGCAGG
GCTCGACGGCGGGGGTGTCATCGTCGTCGTTGTTCTCCTCGGCGACGTGC
GAAGCCAAGAAAACCCCTGCCGACGCCGCGCTACGGCCGCTACATCCCGG
AAGGCTCGCCGCCGAGATCGCCGACCGCGTCGCTGCCACCGCAGGGCTCG
ACGGCGGGGGTGTCATCGTCGTCGTTGTTCTCCTCGGCGACG
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