mRNA_L-elsbetiae_contig876.17799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig876.17799.1
Unique NamemRNA_L-elsbetiae_contig876.17799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig876.17799.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.110e-9
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 ERHGTGNCYMGCDGDESVACGGFNSYSLFKYDKG-DPPITAPEPTSTPEPTPRPVA 165
            ERHG G C+M C GD +VACGG+++YSLFKYD G + P TAP   S   PT  P A
Sbjct: 1307 ERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAPVTDSPDTPTMAPTA 1362
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BLAST of mRNA_L-elsbetiae_contig876.17799.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.060e-7
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 ERHGTGNCYMGCDGDESVACGGFNSYSLFKYDKG 102
            ERHG G C+M C GD +VACGG+++YSLFK+D G
Sbjct:  961 ERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNG 994
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig876.17799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRE8_ECTSI1.110e-957.14EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE3.060e-764.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig876contigL-elsbetiae_contig876:15454..16007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig876.17799.1prot_L-elsbetiae_contig876.17799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig876 15481..15990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816956.0528562-UTR-L-elsbetiae_contig876:15453..154801622816956.0528562-UTR-L-elsbetiae_contig876:15453..15480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig876 15454..15480 +
1691683939.7270472-UTR-L-elsbetiae_contig876:15453..154801691683939.7270472-UTR-L-elsbetiae_contig876:15453..15480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig876 15454..15480 +
1622816956.0911748-UTR-L-elsbetiae_contig876:15990..160071622816956.0911748-UTR-L-elsbetiae_contig876:15990..16007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig876 15991..16007 +
1691683939.7710483-UTR-L-elsbetiae_contig876:15990..160071691683939.7710483-UTR-L-elsbetiae_contig876:15990..16007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig876 15991..16007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816956.0632362-CDS-L-elsbetiae_contig876:15480..155141622816956.0632362-CDS-L-elsbetiae_contig876:15480..15514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig876 15481..15514 +
1691683939.7374995-CDS-L-elsbetiae_contig876:15480..155141691683939.7374995-CDS-L-elsbetiae_contig876:15480..15514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig876 15481..15514 +
1622816956.0805297-CDS-L-elsbetiae_contig876:15808..159901622816956.0805297-CDS-L-elsbetiae_contig876:15808..15990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig876 15809..15990 +
1691683939.7551827-CDS-L-elsbetiae_contig876:15808..159901691683939.7551827-CDS-L-elsbetiae_contig876:15808..15990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig876 15809..15990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig876.17799.1

>prot_L-elsbetiae_contig876.17799.1 ID=prot_L-elsbetiae_contig876.17799.1|Name=mRNA_L-elsbetiae_contig876.17799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MGCDGDESVACGGFNSYSLFKYDKGDPPITAPEPTSTPEPTPRPVAPVAP
PTPGSTPELTPEPVTPMPPPA*
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mRNA from alignment at L-elsbetiae_contig876:15454..16007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig876.17799.1 ID=mRNA_L-elsbetiae_contig876.17799.1|Name=mRNA_L-elsbetiae_contig876.17799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=554bp|location=Sequence derived from alignment at L-elsbetiae_contig876:15454..16007+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGGCACGGCACGGGCAACTGTTACATGGGCTGCGACGGCGACGAAAG
CGTCGCTTGCGGTGCGTCGAAGAGTCGGGTGTTGTCGCATAGACGTAGAT
TTGCGTGTGTTGGTCCATTTTTGATGAAAGTTTGGCTGTTGCATAGTATA
TCTATGCGCGGTTTGGAAAAAAGTACAAATTTTGCCCCGATCAAGCCTGC
CTTTGTACTACGTGAAGTGGTCGTTCCACCAGATTCTGTTCAGTTCCGCC
CTCGTTCCTCCTTCATCTCTGGACAGTTCTAGGTCAGCCTTTTGGTATGA
ACGCGCCCGGTTTATTCCCTCTTACCCCCGAGCCCCCTTCGTACGATTTC
CCAAGGTGGGTTTAACTCCTACTCACTGTTCAAGTACGACAAAGGCGACC
CCCCTATCACTGCCCCCGAGCCGACGTCGACGCCTGAGCCCACCCCTAGG
CCTGTGGCGCCCGTGGCTCCACCTACGCCTGGGTCTACGCCTGAGCTGAC
TCCCGAGCCTGTGACGCCGATGCCCCCGCCCGCGTGAGTTAGCTGAAACC
CTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig876:15454..16007+

>mRNA_L-elsbetiae_contig876.17799.1 ID=mRNA_L-elsbetiae_contig876.17799.1|Name=mRNA_L-elsbetiae_contig876.17799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig876:15454..16007+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTGCGACGGCGACGAAAGCGTCGCTTGCGATGGGCTGCGACGGCG
ACGAAAGCGTCGCTTGCGGTGGGTTTAACTCCTACTCACTGTTCAAGTAC
GACAAAGGCGACCCCCCTATCACTGCCCCCGAGCCGACGTCGACGCCTGA
GCCCACCCCTAGGCCTGTGGCGCCCGTGGCTCCACCTACGCCTGGGTCTA
CGCCTGAGCTGACTCCCGAGCCTGTGACGCCGATGCCCCCGCCCGCGTGA
GTGGGTTTAACTCCTACTCACTGTTCAAGTACGACAAAGGCGACCCCCCT
ATCACTGCCCCCGAGCCGACGTCGACGCCTGAGCCCACCCCTAGGCCTGT
GGCGCCCGTGGCTCCACCTACGCCTGGGTCTACGCCTGAGCTGACTCCCG
AGCCTGTGACGCCGATGCCCCCGCCCGCGTGA
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