mRNA_L-elsbetiae_contig8755.17790.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8755.17790.1
Unique NamemRNA_L-elsbetiae_contig8755.17790.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8755.17790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8755contigL-elsbetiae_contig8755:4597..5577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size323
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8755.17790.1prot_L-elsbetiae_contig8755.17790.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8755 4597..5506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.5212524-CDS-L-elsbetiae_contig8755:4596..46391622816955.5212524-CDS-L-elsbetiae_contig8755:4596..4639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 4597..4639 +
1691683939.331814-CDS-L-elsbetiae_contig8755:4596..46391691683939.331814-CDS-L-elsbetiae_contig8755:4596..4639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 4597..4639 +
1622816955.5332737-CDS-L-elsbetiae_contig8755:5003..50901622816955.5332737-CDS-L-elsbetiae_contig8755:5003..5090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 5004..5090 +
1691683939.3443546-CDS-L-elsbetiae_contig8755:5003..50901691683939.3443546-CDS-L-elsbetiae_contig8755:5003..5090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 5004..5090 +
1622816955.5460446-CDS-L-elsbetiae_contig8755:5384..55061622816955.5460446-CDS-L-elsbetiae_contig8755:5384..5506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 5385..5506 +
1691683939.3529408-CDS-L-elsbetiae_contig8755:5384..55061691683939.3529408-CDS-L-elsbetiae_contig8755:5384..5506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8755 5385..5506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.5580883-UTR-L-elsbetiae_contig8755:5506..55771622816955.5580883-UTR-L-elsbetiae_contig8755:5506..5577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8755 5507..5577 +
1691683939.3614428-UTR-L-elsbetiae_contig8755:5506..55771691683939.3614428-UTR-L-elsbetiae_contig8755:5506..5577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8755 5507..5577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8755.17790.1

>prot_L-elsbetiae_contig8755.17790.1 ID=prot_L-elsbetiae_contig8755.17790.1|Name=mRNA_L-elsbetiae_contig8755.17790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
FNWDAVVEEILQSADGATQWPTSRRFLRERREPGCARWAQRSRCNLVRRG
CCTIAAAHRGARWQRAMPTNHRICRRWKYSTAT*
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mRNA from alignment at L-elsbetiae_contig8755:4597..5577+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8755.17790.1 ID=mRNA_L-elsbetiae_contig8755.17790.1|Name=mRNA_L-elsbetiae_contig8755.17790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=981bp|location=Sequence derived from alignment at L-elsbetiae_contig8755:4597..5577+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACTGGGATGCTGTGGTCGAAGAAATACTACAAAGTGCAGGCGAGCA
TTGTGTTAAACAATAAACAATGATTTGTTCTCTACAGCCTTCCTTCACGC
CGTTTGTATTTTGCGTGCGTAAGAACTCATCTGTCTAAGACTATGTACTA
CGGAAGTCGAAAGAGAGATGGTAATTGCCACATTTATTGGTCGGTTTGGA
CGCGGATTGCTGCTGACGATGAGCTCGTTGTGTTACACTGATCTACGCCA
CCAGCAGATAAATATTCGTGTAGAAGTAGTAACGAACCGCCGAGGGGACA
AAATAGAAAACTATTACAATACCGGTCAACGAGTGCCGTGACGCCACCGT
AGGCTTATTATCCCTCTTGTTGTGCTCGCACGTTCATTCTAAAAACATTT
TGTGCAGACGGGGCTACCCAATGGCCTACATCTCGTCGCTTCCTGCGAGA
ACGCAGAGAGCCAGGTTGTGCGCGTTGGGCCCAACGCAGCCGATGTGAGT
TTGTGGGCAGGTCTTCTTTTACTTCATCGGTTAACATGAAACCCTGACGT
TCCTCCTTTGCTATCTAGTCTATATCTAGACCCAGATATATGAATGTACA
GGGTACGTACAACACAACGTCCATCCCTCATTTGTTTCATTCTTGGAGCC
AAACTGTGTTTCCAATTTTGACTTCCCGACTGCCCCCCCGCGTGATTTAG
ATATGGCTTCTGCGTTTGTTTTCGATCATCGATCTCTCGTTGAATGGATC
CCCCCTCCCGTATCGCGCTCTCTGTCCCCCGAAACCAGGCAACTTGGTAC
GGCGTGGCTGTTGCACCATAGCGGCGGCTCACCGGGGGGCGAGATGGCAA
CGGGCGATGCCAACAAACCACAGGATATGTAGACGGTGGAAGTACTCGAC
CGCCACCTAAAAATACCACCTTGTCTCTTCCGCACACGCACACCCACCCA
TCATCAGCAGGTCAAAATTAGTCTGGGGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8755:4597..5577+

>mRNA_L-elsbetiae_contig8755.17790.1 ID=mRNA_L-elsbetiae_contig8755.17790.1|Name=mRNA_L-elsbetiae_contig8755.17790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig8755:4597..5577+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACTGGGATGCTGTGGTCGAAGAAATACTACAAAGTGCAGTTCAACT
GGGATGCTGTGGTCGAAGAAATACTACAAAGTGCAGACGGGGCTACCCAA
TGGCCTACATCTCGTCGCTTCCTGCGAGAACGCAGAGAGCCAGGTTGTGC
GCGTTGGGCCCAACGCAGCCGATACGGGGCTACCCAATGGCCTACATCTC
GTCGCTTCCTGCGAGAACGCAGAGAGCCAGGTTGTGCGCGTTGGGCCCAA
CGCAGCCGATGCAACTTGGTACGGCGTGGCTGTTGCACCATAGCGGCGGC
TCACCGGGGGGCGAGATGGCAACGGGCGATGCCAACAAACCACAGGATAT
GTAGACGGTGGAAGTACTCGACCGCCACCTAAGCAACTTGGTACGGCGTG
GCTGTTGCACCATAGCGGCGGCTCACCGGGGGGCGAGATGGCAACGGGCG
ATGCCAACAAACCACAGGATATGTAGACGGTGGAAGTACTCGACCGCCAC
CTAA
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