mRNA_L-elsbetiae_contig8752.17787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8752.17787.1
Unique NamemRNA_L-elsbetiae_contig8752.17787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: D7G810_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.230e-31
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNR-SAATFAKVDIDDLPEAFDGVSIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQH 240
            L+VDFTA WCKPC  MAPIFE +A +N+ +AA FAKVDID+LPE FDG SIPAF V + G KVD VTG+GE KL+K+VA H
Sbjct:   67 LVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADH 147          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: F0YBP2_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBP2_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.060e-18
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFDGVSI---PAFQVIRGGAKVDGVTGTGEDKLQKMVAQHC 243
            L+VDFTA WCKPC K+ P F+ +AA    AATF KVD+DDL +  +   +   P FQV R GA    ++G  E+ L+  V  HC
Sbjct:    6 LVVDFTAPWCKPCQKIYPFFKRLAATFDEAATFVKVDVDDLEDVAEAAKVTMMPTFQVYRDGALAGALSGANENNLRHFVETHC 89          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A0M0JU45_9EUKA (Thioredoxin h-type-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU45_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 1.890e-16
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDID---DLPEAFDGVSIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQH 240
            ++VDFTA WC PC ++AP+F  +A K    A F KVD+D   DL  + + +++P FQ+ +GG KVD +TG  E KL  MVA+H
Sbjct:   98 MVVDFTAVWCGPCQRIAPLFAELA-KQHGNALFVKVDVDELEDLMHSCEVLAMPTFQIYKGGEKVDTLTGANEKKLVDMVAKH 179          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A7S4E3K2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3K2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-15
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFDGVSI---PAFQVIRGGAKVDGVTGTGEDKLQKMVAQHCKK 249
            L+VDFTA WC PC K+AP+F+ +AA     A F KVD+DDL +  +   +   P FQ+   GAK D +TG  + KL   V  HC K
Sbjct:  132 LVVDFTATWCGPCQKIAPLFQRLAA-TYDGADFVKVDVDDLDDVAEACGVQAMPTFQIFVNGAKKDAMTGASDAKLTAFVDTHCGK 216          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A2R5GP11_9STRA (Thioredoxin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GP11_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.700e-15
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    4 IVDFTAGWCKPCAKMAPIFESIAAKNRSA---ATFAKVDIDDLPEAFDGVSI---PAFQVIRGGAKVDGVTGTGEDKLQKMVAQHCK 246
            +  FTA WC PC K+AP+F+ + A+  +A   A F ++D+D+L E    V +   P F V + G++VD + G  EDKL+ +VA+HCK
Sbjct:  109 VAKFTADWCGPCKKIAPVFKELCAEVNAAKNSAKFVEIDVDELDEVSADVKVSAMPTFVVFKNGSEVDRLMGAHEDKLRALVAKHCK 195          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A7J6L7E3_PERCH (Thioredoxin domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6L7E3_PERCH)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-14
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPE-AFD-GV-SIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQHCK 246
            L+VD++A WCKPC KMAPIF  +A + +  A F  VD+D+  + A D GV S+PAF++ +G   ++ + G  E KL+  V++ C+
Sbjct:   82 LVVDYSAEWCKPCQKMAPIFADLALEYKDKAAFVHVDVDECDDLAMDHGVASLPAFRIYQGSETLESIVGADEKKLRAAVSKRCR 166          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A0M0JMS8_9EUKA (Nek4 protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMS8_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 2.580e-14
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFDG---VSIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQH 240
            ++VDFTA WC PC ++AP+F  +A ++ +A  F KVD+D+L +       +++P FQ+ +GG KVD +TG  E KL  MV +H
Sbjct:  399 MVVDFTAVWCGPCQRIAPLFAELAQQHGNAL-FVKVDVDELEDVMHSCEVLAMPTFQIYKGGEKVDTLTGANEKKLVDMVTEH 480          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A7S3XI80_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XI80_OXYMA)

HSP 1 Score: 73.2 bits (178), Expect = 4.020e-14
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPE-AFD-GV-SIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQHC 243
            L+VD++A WCKPC KMAPIF  +A + +  A F  VD+D+  + A D GV S+PAF++ +G   ++ + G  E KL+  V++ C
Sbjct:  106 LVVDYSAEWCKPCQKMAPIFADLALEYKDKAAFVHVDVDECDDLAMDHGVASLPAFRIYQGSETLESIVGADEKKLRAAVSKRC 189          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A485K986_9STRA (Aste57867_1359 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K986_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.070e-13
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFDGVSI---PAFQVIRGGAKVDGVTGTGEDKLQKMVAQHC 243
            LIVDFTA WC PC ++AP+F  ++ K   A  F KVD+D+L +      +   P FQV +   KVD V G    KL+ MVA+H 
Sbjct:   89 LIVDFTATWCGPCKRIAPLFAELSGKFPDAM-FVKVDVDELDDVMGACGVRAMPTFQVYKNEKKVDEVVGADSSKLEAMVARHA 171          
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Match: A0A6G0WPB7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPB7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.000e-13
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFD--GV-SIPAFQVIRGGAKVDGVTGTGEDKLQKMVAQ 237
            LIVDFTA WC PC ++AP+F  ++ K   A TF KVD+D+L E     GV ++P FQV +   KVD V G    KL+ MVA+
Sbjct:   90 LIVDFTATWCGPCKRIAPLFAELSGKFPEA-TFVKVDVDELDEVMAECGVRAMPTFQVYKNQKKVDEVVGADASKLETMVAR 170          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8752.17787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G810_ECTSI3.230e-3167.90Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
F0YBP2_AURAN2.060e-1846.43Thioredoxin domain-containing protein (Fragment) n... [more]
A0A0M0JU45_9EUKA1.890e-1646.99Thioredoxin h-type-like protein n=1 Tax=Chrysochro... [more]
A0A7S4E3K2_9STRA1.540e-1545.35Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A2R5GP11_9STRA7.700e-1541.38Thioredoxin n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7J6L7E3_PERCH1.770e-1442.35Thioredoxin domain-containing protein n=1 Tax=Perk... [more]
A0A0M0JMS8_9EUKA2.580e-1443.37Nek4 protein n=1 Tax=Chrysochromulina tobinii TaxI... [more]
A0A7S3XI80_OXYMA4.020e-1442.86Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
A0A485K986_9STRA1.070e-1344.05Aste57867_1359 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WPB7_9STRA3.000e-1348.78Thioredoxin domain-containing protein n=1 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8752contigL-elsbetiae_contig8752:6813..7771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7G810
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003756,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009314,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016853,GO:0016860,GO:0016864,GO:0019220,GO:0019222,GO:0019725,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032879,GO:0032880,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033554,GO:0033674,GO:0034599,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043549,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045859,GO:0045860,GO:0045937,GO:0046822,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051223,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051896,GO:0051897,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902531,GO:1902533,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903827,GO:1904589,GO:1990748,GO:2001023,GO:2001024,GO:2001038,GO:2001039
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-06_009740.1
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.4011478-CDS-L-elsbetiae_contig8752:6812..69081622816955.4011478-CDS-L-elsbetiae_contig8752:6812..6908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 6813..6908 -
1691683939.2787933-CDS-L-elsbetiae_contig8752:6812..69081691683939.2787933-CDS-L-elsbetiae_contig8752:6812..6908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 6813..6908 -
1622816955.4152682-CDS-L-elsbetiae_contig8752:7609..77711622816955.4152682-CDS-L-elsbetiae_contig8752:7609..7771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 7610..7771 -
1691683939.290742-CDS-L-elsbetiae_contig8752:7609..77711691683939.290742-CDS-L-elsbetiae_contig8752:7609..7771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 7610..7771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8752.17787.1prot_L-elsbetiae_contig8752.17787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8752 6813..7771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8752.17787.1

>prot_L-elsbetiae_contig8752.17787.1 ID=prot_L-elsbetiae_contig8752.17787.1|Name=mRNA_L-elsbetiae_contig8752.17787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
LIVDFTAGWCKPCAKMAPIFESIAAKNRSAATFAKVDIDDLPEAFDGVSI
PAFQVIRGGAKVDGVTGTGEDKLQKMVAQHCKKMK*
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mRNA from alignment at L-elsbetiae_contig8752:6813..7771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8752.17787.1 ID=mRNA_L-elsbetiae_contig8752.17787.1|Name=mRNA_L-elsbetiae_contig8752.17787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=959bp|location=Sequence derived from alignment at L-elsbetiae_contig8752:6813..7771- (Laminarionema elsbetiae ELsaHSoW15)
TTGATAGTGGACTTTACCGCGGGCTGGTGCAAGCCGTGCGCGAAGATGGC GCCCATATTCGAGAGCATCGCCGCCAAGAACAGGAGTGCTGCGACGTTCG CGAAGGTTGATATCGACGATCTCCCCGAAGCTTTCGACGGAGTGAGCATC CCGGCATTCCAGGTGAGTCGGTTCGGGCAGATTAAACGATGAGCGCCGTT TGATCGCATGTGTACACACAAAGGTAAAACACGCAGCGCACGTGCACCAT GCACGCCTTTGGCATCGTCTTTTCTTGAGTATCTGAAAATGTTTGACACT CGATTCGGCAAAAACGGGACGATTATCAGGACCTAAATACGTGTAGAAGG TGGCCTTAGATGCCAAGCTCGGTGGGATACTGACTACTGTGTCTTGCCCG ATGTTATGGGGAGAAATCAGGTGTGCGAATGCGAACGACACCTTCCTGAA AGAGACCTCTTGGCAGATTTATCCAGAGCTATCCACCTTGCCCGTCCTCT TTTCGGCCACCCTCGCTGTCGGGGGAGAAGTAGGGTCGTTGAAACGAGCC AGCGGTGGTGTCTGAGGTCACCAACGATAGACGGCAAAGCATGTTCCAGC GGAAAACCTGTTGCGATTCAACAGGACGCCTTCCGCCTAACAAGTCGTTC CCACACTCTTGCCGCTTCATGGAGCAGTGCCGCTTCATTTTTTTTACGCT TTTCTGCTTCGCCACAGGAAGACTATTCCGCTGACTACTGCTGTTGAGCG CGTTTCGAAGTTTTCAAAGAATACGCGTGCGCGTGCAGTAATAGATTCCG AAATGTGCGTTTTCGGCTTTCTGTACTTGTACCTAACCTACGCAATACGC TCGGCTCTGTCAGGTAATACGAGGAGGCGCGAAAGTGGACGGTGTAACAG GCACTGGGGAAGACAAGCTGCAAAAAATGGTCGCTCAGCACTGCAAAAAG ATGAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8752:6813..7771-

>mRNA_L-elsbetiae_contig8752.17787.1 ID=mRNA_L-elsbetiae_contig8752.17787.1|Name=mRNA_L-elsbetiae_contig8752.17787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig8752:6813..7771- (Laminarionema elsbetiae ELsaHSoW15)
TTGATAGTGGACTTTACCGCGGGCTGGTGCAAGCCGTGCGCGAAGATGGC
GCCCATATTCGAGAGCATCGCCGCCAAGAACAGGAGTGCTGCGACGTTCG
CGAAGGTTGATATCGACGATCTCCCCGAAGCTTTCGACGGAGTGAGCATC
CCGGCATTCCAGTTGATAGTGGACTTTACCGCGGGCTGGTGCAAGCCGTG
CGCGAAGATGGCGCCCATATTCGAGAGCATCGCCGCCAAGAACAGGAGTG
CTGCGACGTTCGCGAAGGTTGATATCGACGATCTCCCCGAAGCTTTCGAC
GGAGTGAGCATCCCGGCATTCCAGGTAATACGAGGAGGCGCGAAAGTGGA
CGGTGTAACAGGCACTGGGGAAGACAAGCTGCAAAAAATGGTCGCTCAGC
ACTGCAAAAAGATGAAATAGGTAATACGAGGAGGCGCGAAAGTGGACGGT
GTAACAGGCACTGGGGAAGACAAGCTGCAAAAAATGGTCGCTCAGCACTG
CAAAAAGATGAAATAG
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