mRNA_L-elsbetiae_contig8752.17786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8752.17786.1
Unique NamemRNA_L-elsbetiae_contig8752.17786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8752.17786.1 vs. uniprot
Match: D7G809_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G809_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.040e-61
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 2 
Query:   38 MPEKKHYSYTNLADTPQHGEIIESSYLLGEKGPKSTWTKVLEMVILLATVGGCAYLFLFLFHHGNHRPAA-AKDSASHPHTPVGASSSSSHGPASCLNYPKCAELDLGGACCPDSKGEILDCCTE 409
            MP KK+YSYTNLADTPQHGEIIESSYLL EKGPKS WTKVLEMV+L+AT+GGCAYL +FLFHH NH  +A AKDSASHPH PVGASSS+S  PASC +  KCAEL+L G CCP +KG+ L CC E
Sbjct:    1 MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLVVFLFHHANHHDSATAKDSASHPHPPVGASSSTSQDPASCNSNSKCAELELNGFCCPTAKGDYLACCFE 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8752.17786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G809_ECTSI3.040e-6175.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8752contigL-elsbetiae_contig8752:2042..4624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009730.1
Exons3
Model size531
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8752.17786.1prot_L-elsbetiae_contig8752.17786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8752 2076..4508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.325242-UTR-L-elsbetiae_contig8752:2041..20751622816955.325242-UTR-L-elsbetiae_contig8752:2041..2075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8752 2042..2075 +
1691683939.1920955-UTR-L-elsbetiae_contig8752:2041..20751691683939.1920955-UTR-L-elsbetiae_contig8752:2041..2075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8752 2042..2075 +
1622816955.371848-UTR-L-elsbetiae_contig8752:4508..46241622816955.371848-UTR-L-elsbetiae_contig8752:4508..4624Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8752 4509..4624 +
1691683939.2660341-UTR-L-elsbetiae_contig8752:4508..46241691683939.2660341-UTR-L-elsbetiae_contig8752:4508..4624Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8752 4509..4624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.335506-CDS-L-elsbetiae_contig8752:2075..21291622816955.335506-CDS-L-elsbetiae_contig8752:2075..2129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 2076..2129 +
1691683939.212608-CDS-L-elsbetiae_contig8752:2075..21291691683939.212608-CDS-L-elsbetiae_contig8752:2075..2129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 2076..2129 +
1622816955.34712-CDS-L-elsbetiae_contig8752:3807..40691622816955.34712-CDS-L-elsbetiae_contig8752:3807..4069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 3808..4069 +
1691683939.2353418-CDS-L-elsbetiae_contig8752:3807..40691691683939.2353418-CDS-L-elsbetiae_contig8752:3807..4069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 3808..4069 +
1622816955.3601027-CDS-L-elsbetiae_contig8752:4443..45081622816955.3601027-CDS-L-elsbetiae_contig8752:4443..4508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 4444..4508 +
1691683939.2503905-CDS-L-elsbetiae_contig8752:4443..45081691683939.2503905-CDS-L-elsbetiae_contig8752:4443..4508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8752 4444..4508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8752.17786.1

>prot_L-elsbetiae_contig8752.17786.1 ID=prot_L-elsbetiae_contig8752.17786.1|Name=mRNA_L-elsbetiae_contig8752.17786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MMPEKKHYSYTNLADTPQHGEIIESSYLLGEKGPKSTWTKVLEMVILLAT
VGGCAYLFLFLFHHGNHRPAAAKDSASHPHTPVGASSSSSHGPASCLNYP
KCAELDLGGACCPDSKGEILDCCTET*
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mRNA from alignment at L-elsbetiae_contig8752:2042..4624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8752.17786.1 ID=mRNA_L-elsbetiae_contig8752.17786.1|Name=mRNA_L-elsbetiae_contig8752.17786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2583bp|location=Sequence derived from alignment at L-elsbetiae_contig8752:2042..4624+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCCACAAGCCCCCGCGAGCACCTTGCTAACCATGATGCCGGAGAAGA
AACACTACAGCTACACCAACTTGGCAGACACACCACAGGTCCGTGGCGAT
GGGATTATGTGTGCGTAGTGCAGTCTCGCCGCTTCCCGAACAGGTTTTCC
TATTTCCTATCTATCTAATGGTCGTTCAAAAGGTATGTGCGAGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCCCGACGCTCACGACGATT
CATGTTCCAGGAGAACCACGGCAGGTTGCCGTTTGCCGGTGTGAGGGTTG
CGCATTGCTTTTTTCCGGCGTTGTGACCCCGTAGGAGGGGTCACCCCGCG
GGGTTGAATATTGTTGGCCCGAAGAATCAATCCTCCAACACAACGGTGCT
TTGAGGCACATCGCACTTGGCAACTGCCCATCCTTTTTCATATTTTCTAA
CGTATGTACACACCAATGGTCCTGCTTAAGAAAATTCTTGCGAAATCCAG
CATGTGCCTACGTCCAACCGAAGTACTCCGAGTAGTATTAGACAGACACC
TCCCCTCCCCCAGCAGCAAGCAGTGGCATCGGATCCGTTATTTGGCGAGG
GTATTTATTGTTCGAGGGGGGAGGGTGTTATTCAACGTTAGGGTATTCCG
CAAGGAGCGATACGGCGTTTGCGCGCGCTAGATCAAGGCATAATTTGAAC
TCCCCCTGTCTAGTGGTGATGAGACAGACCCACAGCTATTTCTGCGAATT
GTCAAGCAACGTATGTGCTGCTGTCTGAATTCATCTGGAACGAAAGATGG
AATGAATGCGCAACCAACACAGATTCTAGACAACCTTTTCTACCACCTCG
GCGAGCACGAAATGCAACCTCATGTCGTGGCTCCGCCGGTGCGCGCGCAT
CAACGCCGTGAAGGCGGTGGCACGCACGCACGTAGGTTAATTAGGTTTCA
CCAATATTTTTTCAAACTGTCTACAATAGCGCGCACGAGTGACCAATTTG
ACACCCACCCGTGATGATGTGGAGGCAAGCAGAGAGCCTTTCCTGCACAG
CTCGCGGATACATTACAAATGTGACGATAATTTTGGGTTTTGGTCCTCCG
TCGGTGTTGCCACTTCGAACCTTAACTCTCACCTGCCGGTCTTGAGTGCA
ATCTCTCTGATATTGACAAAGAACGGCGCCATATTTCGAGATCCCTATTG
TGAAAACAATAAAACACGAACAGCCGCTGAAGGACCAACACCCGAACGGC
TAGGTACGTACATAAGTTGGACCGATAACTGGACCGAGTCCGGCGAAAAG
GGGCGGCACGCTCCTTGGCTTTATGCGTTGGGTGCACGATCATAGGAGAC
GTCTTGCGAGTATGCATGTGCTTGATTTAGAGCTACAACAGTATGTTCAT
GCAAGAGTTTCGCAATTCTCGCACTTGGCCGTGTGGAGACCAACTTCCTT
CGGCGATACCAATCTCTATCACCGTGTTGTTCACTGCCAAAAAATTATGC
ATTGTTAGGCACACCTCACGGGAGAATGCAGACGAGCCGCAATCTTCGAG
GAATTGGATGCTGTGTTCTAAACAGAGCAAAGAGGCCTTGCTGCAAGCAG
ACGTGTGTACTTCGCAGCAGAAGACACCTGCTAGAGATACCGCTGGATAG
ATTCCGGCGCTCTTTGTGGGTGTATGCGATGGCATGTGGATGAACGCCAA
CTGTTAATTATCTTCGACGTTACTCTTAACACCGCTCCTGGACCCTCTGC
CCTCCTTGCCACGCAGCATGGGGAGATCATCGAGTCCTCCTACCTTCTTG
GGGAAAAGGGCCCCAAGTCCACGTGGACAAAAGTGCTGGAAATGGTGATC
CTTCTCGCCACCGTGGGCGGATGCGCGTACTTGTTTTTGTTCCTCTTTCA
CCACGGCAATCACCGCCCCGCAGCGGCGAAAGACTCGGCTTCGCACCCGC
ACACGCCCGTGGGGGCTAGCTCTTCCTCGTCACACGGCCCCGCGTCCTGT
CTAAACTACCCCAAGTGCGCGGAACTAGGTGAGCTCGGGCGGCTTACTCT
TGTCCCCGTTGGTCAAGCGAGTTGTTCCAGGTGGTCTGGTAGAGCAGTAC
AGCTGCCGTGGCCTTGGGCTCTTGGCTTGTCGGCTTTTTTGCAACAACTT
TTGAAGTAGACTATATTTATAGGGGTATCATAGAAGAAGTGCATACGCTT
GCCGCTGTCGTGTCGTGCTGGGGCGTCGTCAAAGCGCAGTCGTCAATTTT
CGGCTTCAAACGATCCGGCTTGTGTTGCTTTCGCCCCTGTACTCACTACA
GCCGTCGCCTGATCGAGCGGTCTCTTGTTCTCTCTCCCTCTCTCTTGCGC
ACGCTTCTCCCGTTCGTTGCCTTGATCGCGCTGTGCAACTGCCGCTGCCA
AGATCTGGGTGGCGCGTGCTGCCCCGACAGCAAGGGTGAAATCCTGGATT
GCTGCACGGAAACGTGACCAGCCGGTTCTCTAGACTTTGAGCGGCGACTT
GATGGATGCACCGCTATGTAGAGCACGGCGCAAAATCGCCTCGTTCTTGT
TTGCCGGAGGTGTGAGCGTCGGGGGGGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8752:2042..4624+

>mRNA_L-elsbetiae_contig8752.17786.1 ID=mRNA_L-elsbetiae_contig8752.17786.1|Name=mRNA_L-elsbetiae_contig8752.17786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig8752:2042..4624+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCCGGAGAAGAAACACTACAGCTACACCAACTTGGCAGACACACC
ACAGATGATGCCGGAGAAGAAACACTACAGCTACACCAACTTGGCAGACA
CACCACAGCATGGGGAGATCATCGAGTCCTCCTACCTTCTTGGGGAAAAG
GGCCCCAAGTCCACGTGGACAAAAGTGCTGGAAATGGTGATCCTTCTCGC
CACCGTGGGCGGATGCGCGTACTTGTTTTTGTTCCTCTTTCACCACGGCA
ATCACCGCCCCGCAGCGGCGAAAGACTCGGCTTCGCACCCGCACACGCCC
GTGGGGGCTAGCTCTTCCTCGTCACACGGCCCCGCGTCCTGTCTAAACTA
CCCCAAGTGCGCGGAACTAGCATGGGGAGATCATCGAGTCCTCCTACCTT
CTTGGGGAAAAGGGCCCCAAGTCCACGTGGACAAAAGTGCTGGAAATGGT
GATCCTTCTCGCCACCGTGGGCGGATGCGCGTACTTGTTTTTGTTCCTCT
TTCACCACGGCAATCACCGCCCCGCAGCGGCGAAAGACTCGGCTTCGCAC
CCGCACACGCCCGTGGGGGCTAGCTCTTCCTCGTCACACGGCCCCGCGTC
CTGTCTAAACTACCCCAAGTGCGCGGAACTAGATCTGGGTGGCGCGTGCT
GCCCCGACAGCAAGGGTGAAATCCTGGATTGCTGCACGGAAACGTGAATC
TGGGTGGCGCGTGCTGCCCCGACAGCAAGGGTGAAATCCTGGATTGCTGC
ACGGAAACGTGA
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