mRNA_L-elsbetiae_contig8747.17780.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8747.17780.1
Unique NamemRNA_L-elsbetiae_contig8747.17780.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8747.17780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8747contigL-elsbetiae_contig8747:2377..2995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.835478-CDS-L-elsbetiae_contig8747:2376..24371622816954.835478-CDS-L-elsbetiae_contig8747:2376..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 2377..2437 +
1691683938.8308306-CDS-L-elsbetiae_contig8747:2376..24371691683938.8308306-CDS-L-elsbetiae_contig8747:2376..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 2377..2437 +
1622816954.8481283-CDS-L-elsbetiae_contig8747:2687..29951622816954.8481283-CDS-L-elsbetiae_contig8747:2687..2995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 2688..2995 +
1691683938.8412862-CDS-L-elsbetiae_contig8747:2687..29951691683938.8412862-CDS-L-elsbetiae_contig8747:2687..2995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 2688..2995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8747.17780.1prot_L-elsbetiae_contig8747.17780.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8747 2377..2995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8747.17780.1

>prot_L-elsbetiae_contig8747.17780.1 ID=prot_L-elsbetiae_contig8747.17780.1|Name=mRNA_L-elsbetiae_contig8747.17780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
RRSAETAPESAAPEMVDGSREPLGVGQSERRADCTQAPRVHRPVHHPHRQ
DPGATVHRRKNEILRLVFLRRHVRSHSRDAMFFSSRPPYVREESDLHQRR
VADPERLYRLQRPFQRDSATGV*
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mRNA from alignment at L-elsbetiae_contig8747:2377..2995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8747.17780.1 ID=mRNA_L-elsbetiae_contig8747.17780.1|Name=mRNA_L-elsbetiae_contig8747.17780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig8747:2377..2995+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGAGTGCTGAGACGGCGCCAGAGTCTGCAGCACCGGAAATGGTGGA
CGGATCAAGAGGTGTGTATTTCATTCAAACCTACGACGCATGCCGCAGAG
CTAGCTGCCTTCCAAGTGTTCCGCCCATGTCACATTTCAAAGGCCAATCG
CCACGATGATGAAAATATATGTGTGTCTTATGATCAATTTGCAGTACATG
GTCAACGTGCCATCGAGTGTAGTGCGTGCATGCTTGAAGAGTTCGTGTCA
ATACAGTCAGTCCACCAAGATCTGCACCAAGTTTCTTCCTTTTTTTGTCT
GCAAGATCAAGAGCCTCTTGGAGTGGGACAATCTGAGCGACGGGCAGATT
GTACACAAGCTCCACGAGTACATCGACCTGTACATCACCCGCATCGCCAG
GATCCCGGGGCAACTGTACACCGCCGCAAGAACGAGATCCTTCGACTCGT
GTTCCTCCGACGCCACGTACGTTCCCACTCTCGAGACGCTATGTTTTTTT
CTTCACGACCACCCTATGTTCGCGAGGAATCAGACCTTCACCAGCGCCGT
GTGGCAGATCCGGAACGACTGTATCGACTTCAGCGCCCTTTTCAGCGAGA
CTCAGCGACCGGTGTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8747:2377..2995+

>mRNA_L-elsbetiae_contig8747.17780.1 ID=mRNA_L-elsbetiae_contig8747.17780.1|Name=mRNA_L-elsbetiae_contig8747.17780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig8747:2377..2995+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGAGTGCTGAGACGGCGCCAGAGTCTGCAGCACCGGAAATGGTGGA
CGGATCAAGAGAGAAGGAGTGCTGAGACGGCGCCAGAGTCTGCAGCACCG
GAAATGGTGGACGGATCAAGAGAGCCTCTTGGAGTGGGACAATCTGAGCG
ACGGGCAGATTGTACACAAGCTCCACGAGTACATCGACCTGTACATCACC
CGCATCGCCAGGATCCCGGGGCAACTGTACACCGCCGCAAGAACGAGATC
CTTCGACTCGTGTTCCTCCGACGCCACGTACGTTCCCACTCTCGAGACGC
TATGTTTTTTTCTTCACGACCACCCTATGTTCGCGAGGAATCAGACCTTC
ACCAGCGCCGTGTGGCAGATCCGGAACGACTGTATCGACTTCAGCGCCCT
TTTCAGCGAGACTCAGCGACCGGTGTTTGAAGCCTCTTGGAGTGGGACAA
TCTGAGCGACGGGCAGATTGTACACAAGCTCCACGAGTACATCGACCTGT
ACATCACCCGCATCGCCAGGATCCCGGGGCAACTGTACACCGCCGCAAGA
ACGAGATCCTTCGACTCGTGTTCCTCCGACGCCACGTACGTTCCCACTCT
CGAGACGCTATGTTTTTTTCTTCACGACCACCCTATGTTCGCGAGGAATC
AGACCTTCACCAGCGCCGTGTGGCAGATCCGGAACGACTGTATCGACTTC
AGCGCCCTTTTCAGCGAGACTCAGCGACCGGTGTTTGA
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