mRNA_L-elsbetiae_contig8744.17776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8744.17776.1
Unique NamemRNA_L-elsbetiae_contig8744.17776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8744.17776.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.220e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:   62 ACARA*RTNLIQAIKADGCDVDIFAYATRRDAV 160
            A  R+ RTNLI++IKADGC+VD+FAY TR D V
Sbjct:   14 AVHRSIRTNLIESIKADGCEVDVFAYVTREDTV 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8744.17776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK46_ECTSI6.220e-666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8744contigL-elsbetiae_contig8744:5741..6075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.5234823-CDS-L-elsbetiae_contig8744:5741..58221622816954.5234823-CDS-L-elsbetiae_contig8744:5741..5822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8744 5742..5822 -
1691683938.6292336-CDS-L-elsbetiae_contig8744:5741..58221691683938.6292336-CDS-L-elsbetiae_contig8744:5741..5822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8744 5742..5822 -
1622816954.5359266-CDS-L-elsbetiae_contig8744:5994..60751622816954.5359266-CDS-L-elsbetiae_contig8744:5994..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8744 5995..6075 -
1691683938.640878-CDS-L-elsbetiae_contig8744:5994..60751691683938.640878-CDS-L-elsbetiae_contig8744:5994..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8744 5995..6075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8744.17776.1prot_L-elsbetiae_contig8744.17776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8744 5742..6075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8744.17776.1

>prot_L-elsbetiae_contig8744.17776.1 ID=prot_L-elsbetiae_contig8744.17776.1|Name=mRNA_L-elsbetiae_contig8744.17776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
PLCCSVGSDRREREKKQALQGMCSSIKDQSHPGNQGGWLRCGYIRVCHTK
RRGP
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mRNA from alignment at L-elsbetiae_contig8744:5741..6075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8744.17776.1 ID=mRNA_L-elsbetiae_contig8744.17776.1|Name=mRNA_L-elsbetiae_contig8744.17776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=335bp|location=Sequence derived from alignment at L-elsbetiae_contig8744:5741..6075- (Laminarionema elsbetiae ELsaHSoW15)
CCGCTTTGCTGCTCGGTAGGATCTGATCGCAGGGAGCGGGAGAAAAAGCA
GGCACTCCAAGGCATGTGCTCGAGCATAAAGGCACGTGCAAGGAGGACCT
CATGTTCTTGAAAGTTGTTCCTCTTCGTTGGATTGTGGGTGCCAGCACCA
GCATCGCTTCTGTTTTTTCCGAAATTGTCATGTGCCGTGTAGCTGTATGC
TTCTCTGGTGCCATCAGGTCCTTGGTGCATCCCGCGGTGCATAATTCCAT
CAGGACCAATCTCATCCAGGCAATCAAGGCGGATGGCTGCGATGTGGATA
TATTCGCGTATGCCACACGAAGAGACGCGGTCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8744:5741..6075-

>mRNA_L-elsbetiae_contig8744.17776.1 ID=mRNA_L-elsbetiae_contig8744.17776.1|Name=mRNA_L-elsbetiae_contig8744.17776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig8744:5741..6075- (Laminarionema elsbetiae ELsaHSoW15)
CCGCTTTGCTGCTCGGTAGGATCTGATCGCAGGGAGCGGGAGAAAAAGCA
GGCACTCCAAGGCATGTGCTCGAGCATAAAGCCGCTTTGCTGCTCGGTAG
GATCTGATCGCAGGGAGCGGGAGAAAAAGCAGGCACTCCAAGGCATGTGC
TCGAGCATAAAGGACCAATCTCATCCAGGCAATCAAGGCGGATGGCTGCG
ATGTGGATATATTCGCGTATGCCACACGAAGAGACGCGGTCCAGACCAAT
CTCATCCAGGCAATCAAGGCGGATGGCTGCGATGTGGATATATTCGCGTA
TGCCACACGAAGAGACGCGGTCCA
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