mRNA_L-elsbetiae_contig8741.17772.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8741.17772.1
Unique NamemRNA_L-elsbetiae_contig8741.17772.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8741.17772.1 vs. uniprot
Match: D8LQ02_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ02_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.010e-22
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MPSSVLDAIAGRNAAQRRRVVEKKRGETIDVPEGSGVLVTGCSGCVINAPGRSASVT 171
            M SSVL  IA RNAAQRRRVVEKK GETIDVPEGSG+LVTGCSGC INAPGRS+SVT
Sbjct:    1 MSSSVLKTIAARNAAQRRRVVEKKHGETIDVPEGSGLLVTGCSGCTINAPGRSSSVT 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8741.17772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ02_ECTSI1.010e-2285.96C-CAP/cofactor C-like domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8741contigL-elsbetiae_contig8741:7994..8260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylate cyclase-associated CAP, C-terminal
Ec32 orthologEc-15_001460.1
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.3459823-CDS-L-elsbetiae_contig8741:7993..82601622816954.3459823-CDS-L-elsbetiae_contig8741:7993..8260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8741 7994..8260 +
1691683938.5057547-CDS-L-elsbetiae_contig8741:7993..82601691683938.5057547-CDS-L-elsbetiae_contig8741:7993..8260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8741 7994..8260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8741.17772.1prot_L-elsbetiae_contig8741.17772.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8741 7994..8260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8741.17772.1

>prot_L-elsbetiae_contig8741.17772.1 ID=prot_L-elsbetiae_contig8741.17772.1|Name=mRNA_L-elsbetiae_contig8741.17772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MPSSVLDAIAGRNAAQRRRVVEKKRGETIDVPEGSGVLVTGCSGCVINAP
GRSASVTVERCEGTRVNVGSVVASLEVIHCKDVRVSVER
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mRNA from alignment at L-elsbetiae_contig8741:7994..8260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8741.17772.1 ID=mRNA_L-elsbetiae_contig8741.17772.1|Name=mRNA_L-elsbetiae_contig8741.17772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=267bp|location=Sequence derived from alignment at L-elsbetiae_contig8741:7994..8260+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTCCTCGGTACTGGACGCGATCGCGGGGCGCAACGCCGCCCAGCG
GAGACGGGTGGTGGAGAAGAAGAGGGGAGAGACTATTGACGTCCCCGAAG
GGTCGGGCGTGCTCGTCACCGGCTGCAGCGGCTGCGTGATCAACGCGCCG
GGGAGGTCGGCCAGCGTCACCGTGGAGCGCTGCGAGGGCACCAGGGTCAA
CGTCGGCAGCGTAGTCGCCTCGCTCGAGGTCATCCACTGCAAGGACGTTC
GAGTCTCGGTGGAAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8741:7994..8260+

>mRNA_L-elsbetiae_contig8741.17772.1 ID=mRNA_L-elsbetiae_contig8741.17772.1|Name=mRNA_L-elsbetiae_contig8741.17772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig8741:7994..8260+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTCCTCGGTACTGGACGCGATCGCGGGGCGCAACGCCGCCCAGCG
GAGACGGGTGGTGGAGAAGAAGAGGGGAGAGACTATTGACGTCCCCGAAG
GGTCGGGCGTGCTCGTCACCGGCTGCAGCGGCTGCGTGATCAACGCGCCG
GGGAGGTCGGCCAGCGTCACCGTGGAGCGCTGCGAGGGCACCAGGGTCAA
CGTCGGCAGCGTAGTCGCCTCGCTCGAGGTCATCCACTGCAAGGACGTTC
GAGTCTCGGTGGAAAGGATGCCCTCCTCGGTACTGGACGCGATCGCGGGG
CGCAACGCCGCCCAGCGGAGACGGGTGGTGGAGAAGAAGAGGGGAGAGAC
TATTGACGTCCCCGAAGGGTCGGGCGTGCTCGTCACCGGCTGCAGCGGCT
GCGTGATCAACGCGCCGGGGAGGTCGGCCAGCGTCACCGTGGAGCGCTGC
GAGGGCACCAGGGTCAACGTCGGCAGCGTAGTCGCCTCGCTCGAGGTCAT
CCACTGCAAGGACGTTCGAGTCTCGGTGGAAAGG
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