mRNA_L-elsbetiae_contig8734.17764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8734.17764.1
Unique NamemRNA_L-elsbetiae_contig8734.17764.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: D8LDI0_ECTSI (Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI0_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 3.260e-133
Identity = 207/225 (92.00%), Postives = 218/225 (96.89%), Query Frame = 1
Query:   22 ELRTRGKRLEAQGDEEEHAARLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETSGH 696
            ELRTR KR+EA G EEEHAA+LEK A+ LELS K+Q+QKK+LI+NAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCREL+DH KIMEKIEKGEKRIFRSKQIRSAIDSKV+RHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELET+G+
Sbjct:  814 ELRTRCKRMEAHGGEEEHAAQLEKTASGLELSSKEQDQKKKLIDNAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVSRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETTGN 1038          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 3.300e-133
Identity = 208/225 (92.44%), Postives = 218/225 (96.89%), Query Frame = 1
Query:   22 ELRTRGKRLEAQGDEEEHAARLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETSGH 696
            ELRTR KR+EAQG EEE AA+LEK AN LELS K+QEQKK+LI+NAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCREL+DH KIMEKIEKGEKRIFRSKQIRSAIDSKV+RH+NPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELET+G+
Sbjct:  848 ELRTRCKRMEAQGGEEEQAAQLEKTANGLELSSKEQEQKKKLIDNAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVSRHSNPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETTGN 1072          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A7S1XXH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH0_9STRA)

HSP 1 Score: 249 bits (635), Expect = 7.910e-79
Identity = 113/199 (56.78%), Postives = 160/199 (80.40%), Query Frame = 1
Query:   94 EANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETS 690
            E    EL  + + +K++L+E +FG W +KDF+AFVAA ERHGR+D +A+VRDV LET K E+++ +Y + FW+R  EL +H K++E+IEKGE+RI R K IR+A+++KV RH +PW  +T++Y GGKGK++T EED FL+NMMHR+GYG WE IR+E+R+AWQFRFDW+FKSR+A E+QRR + L+R +EKENEE+E++
Sbjct:   61 EEGKFELPDELKAEKQQLVEASFGHWTKKDFKAFVAAMERHGREDVDAIVRDVTLETGKAEDDIARYYRTFWERYEELPEHPKLLERIEKGERRIARMKSIRAALEAKVGRHPDPWRLMTLDYNGGKGKMYTLEEDVFLINMMHRHGYGEWERIRLEVRRAWQFRFDWYFKSRSAPEIQRRCEQLVRFIEKENEEIESA 259          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A835ZE29_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE29_9STRA)

HSP 1 Score: 263 bits (672), Expect = 9.390e-78
Identity = 128/196 (65.31%), Postives = 157/196 (80.10%), Query Frame = 1
Query:  103 ALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETS 690
            AL LS KD   KKRLI +AF DW RKD R FVAA ER+GR D + VVR+V ++T K +E++ +Y  VF KRC ELSDH K+MEKIE+GE+RI RSK+I+ A++ KV RH +PW  L I+Y   KGK +TEEEDAFL+NMMHRYGYGNWEVIR +I+KAWQF FDWFFKSRNAAELQ+RGD LI++VEKENEE++ +
Sbjct:  750 ALVLSDKDAADKKRLIADAFPDWTRKDARTFVAALERNGRGDRDQVVREVAIDTGKPDEDIVRYFNVFLKRCHELSDHAKVMEKIERGERRIQRSKEIKVALEKKVQRHQSPWQHLPISYGSTKGKTYTEEEDAFLINMMHRYGYGNWEVIRTQIKKAWQFHFDWFFKSRNAAELQKRGDYLIKVVEKENEEIDAA 945          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A6U0WH08_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WH08_9STRA)

HSP 1 Score: 254 bits (648), Expect = 5.400e-74
Identity = 121/207 (58.45%), Postives = 160/207 (77.29%), Query Frame = 1
Query:   85 LEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETSGHGGK 705
            +E E    ELS + +++K+ LIE +FG W +KDF++FV+A ERHGR+D + +VR+V LET KTEE++ +Y   FW R  EL +H KI+E+IEKGE+RI R K+I+ A+D KV RH +PW  ++INY G KGK++T EED FL+NMMHR+GYG WE IR+EIR+AWQFRFDW+FKSRN  E+QRR DTLIR++EKENEE E S   G+
Sbjct:  873 MELEEGDYELSDELRQEKQELIEESFGHWTKKDFKSFVSAMERHGREDVDLIVREVSLETGKTEEDIARYYTTFWTRYEELPEHPKILERIEKGERRIARLKEIKHALDVKVARHPDPWRLMSINYNGNKGKMYTLEEDVFLINMMHRHGYGEWERIRLEIRRAWQFRFDWYFKSRNVNEIQRRCDTLIRVIEKENEEFEGSDSRGR 1079          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 246 bits (629), Expect = 1.260e-71
Identity = 129/226 (57.08%), Postives = 164/226 (72.57%), Query Frame = 1
Query:    1 MSCLVEQELRTRGKRLEAQGDEEEHAARLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEE 678
            +  L+ +E    GK+ EA+ DE E  A LE    A EL  K+  +K+RL++  FGDW RKD RAF+ A ERHGR D +AV R+   ET KT+ +VR+Y   FWK+ ++++D  ++++K+EKGEKR+ RS++IRSA+  KV RH  PW  L INY   +GKV+TEEEDAFL+NMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA EL RR D LIRLVEKENE+
Sbjct:  732 LEVLLAKEDELAGKKHEARADEME--ATLE---TAYELPVKEAVRKERLLKEGFGDWTRKDLRAFLNAMERHGRGDVDAVARETANETGKTDADVRRYHATFWKKHKDIADWERLVDKVEKGEKRLQRSQEIRSALADKVARHPKPWECLPINYGASRGKVWTEEEDAFLVNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNAQELNRRADLLIRLVEKENED 952          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A7S2SFZ0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFZ0_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.890e-68
Identity = 126/229 (55.02%), Postives = 168/229 (73.36%), Query Frame = 1
Query:   22 ELRTRGKRLEAQGDEEEHAA---RLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRE-LSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGG-----KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEEL 681
            ELRTR  R +   DEE+ +A   RLE E   ++LS ++Q  K +L+E  FGDW RKDF+ FVAA E+HGR+DT+ V R V  ET K E  V +Y  VFWK+  + L+D  K++EKIE+GEK+I R ++IR A++SKV+R+  P+  LT+NY  G     +GK++TEEEDAFL+ MMHR+GYG W+ IR EIR+AWQF+FDWFFKSRN++ELQRR D L+R +E+ENEEL
Sbjct:  826 ELRTRASREQWGSDEEDPSAIADRLENETQTMQLSDREQATKTKLLEEGFGDWTRKDFKCFVAALEQHGREDTDNVFRQVGAETGKPETEVERYYGVFWKKGEKCLADWAKVVEKIERGEKKIARHQEIRDALESKVSRYEVPFMQLTMNYGAGGAGGARGKIWTEEEDAFLVCMMHRHGYGQWDRIRQEIRRAWQFKFDWFFKSRNSSELQRRCDILLRCIERENEEL 1054          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A2R5GCY8_9STRA (ISWI chromatin-remodeling complex ATPase CHR11 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCY8_9STRA)

HSP 1 Score: 237 bits (605), Expect = 7.690e-68
Identity = 116/220 (52.73%), Postives = 156/220 (70.91%), Query Frame = 1
Query:   49 EAQGDEEEHAARLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETSGHGGKK 708
            EA+GD++  + RLE+E   +ELS ++QE+K++LI   FG WNR+DFRA+ +A ERHGRD  + ++ DV   T K +  +R Y   FW+R +E+SDH +I+++I+KGE+++ R   I  A+D KV R  NPW  LTINY   KGK F+EEED FL+ M+ R GYG W+ ++ EIRKAW FRFDWFFKSR AAELQRR DTL+RL+EKE EE       GK+
Sbjct:  911 EAEGDKKPLSERLEEELATMELSAEEQEEKEKLISEGFGSWNRRDFRAYTSACERHGRDARDDILADVAEATGKPKTEIRDYHDTFWRRYKEISDHERIIDRIKKGEQKLARRAAITEALDKKVARTKNPWQALTINYGSNKGKTFSEEEDRFLVCMLQRLGYGAWDQLKQEIRKAWNFRFDWFFKSRTAAELQRRADTLVRLIEKELEEETKKSEAGKR 1130          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A7S2BNI9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNI9_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.670e-67
Identity = 117/206 (56.80%), Postives = 156/206 (75.73%), Query Frame = 1
Query:   76 AARLEKEANALELSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCR-ELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYY----GGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEE 678
            A RLE E   + L+ KD   K +L+E  FGDW RKD+RA++ A E+ GRDD E+VVR V  ET+K E  V +Y  VFWK+   +LSD  KI+EKIEKGEK+I R+++IR A+++KV R+A P+  LT+++     G +GK+++EEEDA+L+ MMHR+GYG WE IR EIR+AWQF+FDWFFKSR+AA+LQRRGD L+R +EKENEE
Sbjct:  422 ADRLEAELPNICLADKDANAKAKLMEEGFGDWTRKDYRAYLQALEQFGRDDVESVVRQVAAETSKPEAAVERYNGVFWKKASSQLSDWSKIIEKIEKGEKKIARNREIREALETKVNRYAQPFQQLTVSFAASSGGARGKIWSEEEDAYLVCMMHRHGYGQWERIRQEIRRAWQFKFDWFFKSRSAADLQRRGDVLLRCIEKENEE 627          
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Match: A0A7S3PML4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PML4_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.360e-67
Identity = 123/226 (54.42%), Postives = 157/226 (69.47%), Query Frame = 1
Query:   34 RGKRLEAQGDEEEHAARLEKEANALE-------LSPKDQEQKKRLIENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETS 690
            RGK  E Q D ++ A + ++E   LE       L+ ++QE+K RL+E AFGDWNR+DFRA+  A ERHGR D +A++ DV   T KT+E+VR Y   FW+R +EL D  K +++I+KGE ++ R   I  A+ SKV R  NPW  LT+NY   KGK FTEEED FL+ MM+R GYG W+ ++ EIRKAW FRFDWFFKSR  AELQRR DTL+RLVEKENEE+  S
Sbjct:  807 RGKFGEVQEDTDDAAKKAKEELEKLEAKLDDFQLTEEEQEEKDRLVEEAFGDWNRRDFRAYTQACERHGRKDIKAIIADVVDATGKTKEDVRAYHNTFWERYKELQDWEKTIDRIKKGEHKLKRKHAIAEALRSKVERTTNPWQTLTLNYGSNKGKTFTEEEDRFLVCMMNRLGYGAWDQLKQEIRKAWNFRFDWFFKSRTTAELQRRCDTLVRLVEKENEEMSGS 1032          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8734.17764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI0_ECTSI3.260e-13392.00Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KHP7_9PHAE3.300e-13392.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XXH0_9STRA7.910e-7956.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZE29_9STRA9.390e-7865.31P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6U0WH08_9STRA5.400e-7458.45Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YAG6_AURAN1.260e-7157.08Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
A0A7S2SFZ0_9STRA1.890e-6855.02Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2R5GCY8_9STRA7.690e-6852.73ISWI chromatin-remodeling complex ATPase CHR11 n=1... [more]
A0A7S2BNI9_9STRA3.670e-6756.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3PML4_9STRA5.360e-6754.42Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8734contigL-elsbetiae_contig8734:1068..6107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.5
Seed ortholog evalue3.9e-113
Seed eggNOG ortholog2880.D8LDI0
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons7
Model size804
Cds size804
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816953.5625367-CDS-L-elsbetiae_contig8734:1067..11721622816953.5625367-CDS-L-elsbetiae_contig8734:1067..1172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 1068..1172 +
1691683937.9229305-CDS-L-elsbetiae_contig8734:1067..11721691683937.9229305-CDS-L-elsbetiae_contig8734:1067..1172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 1068..1172 +
1622816953.574051-CDS-L-elsbetiae_contig8734:1646..17621622816953.574051-CDS-L-elsbetiae_contig8734:1646..1762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 1647..1762 +
1691683937.9391723-CDS-L-elsbetiae_contig8734:1646..17621691683937.9391723-CDS-L-elsbetiae_contig8734:1646..1762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 1647..1762 +
1622816953.584534-CDS-L-elsbetiae_contig8734:2278..23571622816953.584534-CDS-L-elsbetiae_contig8734:2278..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 2279..2357 +
1691683937.9519956-CDS-L-elsbetiae_contig8734:2278..23571691683937.9519956-CDS-L-elsbetiae_contig8734:2278..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 2279..2357 +
1622816953.5953062-CDS-L-elsbetiae_contig8734:3096..32701622816953.5953062-CDS-L-elsbetiae_contig8734:3096..3270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 3097..3270 +
1691683937.9704394-CDS-L-elsbetiae_contig8734:3096..32701691683937.9704394-CDS-L-elsbetiae_contig8734:3096..3270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 3097..3270 +
1622816953.6062672-CDS-L-elsbetiae_contig8734:4008..41071622816953.6062672-CDS-L-elsbetiae_contig8734:4008..4107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 4009..4107 +
1691683937.9825068-CDS-L-elsbetiae_contig8734:4008..41071691683937.9825068-CDS-L-elsbetiae_contig8734:4008..4107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 4009..4107 +
1622816953.6179442-CDS-L-elsbetiae_contig8734:5003..51141622816953.6179442-CDS-L-elsbetiae_contig8734:5003..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 5004..5114 +
1691683937.9913042-CDS-L-elsbetiae_contig8734:5003..51141691683937.9913042-CDS-L-elsbetiae_contig8734:5003..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 5004..5114 +
1622816953.6298983-CDS-L-elsbetiae_contig8734:5987..61071622816953.6298983-CDS-L-elsbetiae_contig8734:5987..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 5988..6107 +
1691683938.000505-CDS-L-elsbetiae_contig8734:5987..61071691683938.000505-CDS-L-elsbetiae_contig8734:5987..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8734 5988..6107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8734.17764.1prot_L-elsbetiae_contig8734.17764.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8734 1068..6107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8734.17764.1

>prot_L-elsbetiae_contig8734.17764.1 ID=prot_L-elsbetiae_contig8734.17764.1|Name=mRNA_L-elsbetiae_contig8734.17764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
MSCLVEQELRTRGKRLEAQGDEEEHAARLEKEANALELSPKDQEQKKRLI
ENAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIK
VFWKRCRELSDHGKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDL
TINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWF
FKSRNAAELQRRGDTLIRLVEKENEELETSGHGGKKRKSFSASEQTASSK
KKKPSTPATGGKKQRRR*
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mRNA from alignment at L-elsbetiae_contig8734:1068..6107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8734.17764.1 ID=mRNA_L-elsbetiae_contig8734.17764.1|Name=mRNA_L-elsbetiae_contig8734.17764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5040bp|location=Sequence derived from alignment at L-elsbetiae_contig8734:1068..6107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTGCCTTGTTGAGCAGGAGCTGAGGACGAGAGGCAAGAGGCTGGA GGCGCAGGGTGACGAGGAGGAGCACGCCGCCCGCCTCGAAAAGGAGGCGA ATGCGGTACGGGTCATCGATCTCGCCCCACATTATCTATTATTCCACGTA CTACTAACCTGTAGAACAGCATTTCAGCATGCCCGCTGTGTAGCCCGTGG AGGTATATTAGATGCATGACTAGTTCGCGCCGTATTTTGGGGGGTCTGTG GAAGGAATACACATGTATATGTATGTGTACCTGCGAACACACGGACGGGT TCACGCCACAGCAATGGGTTTCGATACACTGGCCTCGAAAGTAAATGTAT TTAGAGGTTGCCGCGTTTGCCAGAGAGAAGGTACCTAAACTCAACGACTT GCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGCTATTGCTGTTGCCGCTGC TGCTGTTGGCCGCTGCTGCTGTTGGCCGCTCTGGTGGTAACTGTGTGTTT GTTCGTCCGTGGTTTTATGTATACATATAACGTTGGTTTTTTTTTGTCTC TCTTGTCTCTTTTGTCTCCTGTCGGCCAGTTGGAGCTTTCTCCCAAGGAC CAGGAGCAGAAGAAGCGCCTGATCGAGAACGCCTTCGGGGACTGGAACCG CAAGGATTTCCGCGCCTTCGTCGCCGCCACGGAGCGACACGGCCGGTGAG CTTTTTTTTTTTTTTTATTGAACTTTTGCACGCACGCACAGCAAACCGAA AACAGACAGAACGAAGTGGGGCTCTTTAAAATACAATACCCTCTTTCTTT TTTGAAAGATAAATTTAAGCAGATAATCAAAAATGGAACCTAAGCCACAT TGGAGACGGGACTCCCGTGAGAATTTTCGTTTATAAATAAAAAAAATAAT AAGGAAGTCAAAGAAAGGACCTCCCCACATTAGAGGGACTCCCTGGTGAA TTAACAGCACTTTTAATACGGGCAGTGACGTAAATAGTAATATACCCTTT TTTTTTTCTTCTTGTCTTTTTGTAATTAATGTATACAAATGTCAGCAGTC TACGTCTGCCCAGTCTGCGAAAAAGTCGTTCGAGAGGGACTGGTGTAGGC ATACCAACCTTCCCTCCCTTAACATACTAGCACCAAATCAGCACTCCTAC TACTAACTATTGTATTCCATTTTTTTTCGATGTATTTCTTGGATCCGATT CGTTCCGGAAGGGACGACACGGAGGCGGTGGTGCGCGACGTGTGTCTGGA GACGGCCAAGACGGAGGAGAACGTCCGCAAGTACATCAAGGTGAGCACAA TACAGCAGTTCGGTGCAATAATGTGTAGGTAATGTTACGAAATATAGATA AGAAACAATAATTTGTGTCACGTAAATATTTGGGTAATTTTTTTTTTTTT TTTATGTCTCCACATTTTGAACTTTTATGGCGCGGTTTCCGCTCTAGACC TACAATACCTACCATTTGTACAATCTGTTGGGATGGGTTTTGCTCCTGCG TCTTGGAGCACTTCGACATGTATAAATATTTGGTTTAGGAGGGGGGGGGG GTTCGTACCCCGAGAGTTTTACTTGTACACGTTCTTGCTGGTTGTTTGGC GGTCCTACATATGTACATAAACGCGACCCAGGTAGTTGACAAGAGAAGGG ACAGCCGAACCCTTCTTGCGATAAAATGAAGGCAAGTACCGCAGGAGGAA GGTGGGGCAAAAAAAGAAGAAAACAAAAAAGAAAGAAGAAAAAGCCCCAG TGTTCACCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAA TGCGCTGCAAAGTGTAGTACCTCCAAGTACACCGCAAGGTGTAGTACACG TCTCCACTTGGGGGGAATGTCGCCAAAATAAATGGGAAGGACACACACAC AGGTATGTACTTGTAATTTACTATATATATATTTTATTTTATTTTTTATT TGTAATTTGTATATATTACTGAAAAAGTATAATTGACCCCTCTTTTGCTC CTTCTTGTCCTTTTCCTGGAACCTTCCAGGTGTTCTGGAAGCGGTGCCGA GAGCTTAGCGACCACGGCAAGATCATGGAGAAGATCGAGAAGGGAGAGAA GCGCATCTTCCGATCCAAGCAGATCCGATCGGCCATCGACAGCAAGGTCA CCCGACACGCAAACCCGTGGAGCGACCTCACCATCAACTACTACGGCGGC AAGGTGCGTTGCGCCACCACCAGACAGACAACACACACACACACACACAC ACAGGGAAACCGAAACAGTGATGGTCCTTGCTTCGACCTTTTATTTTGTC CTGCGGGGGGCCGCGGCACGGACGGTATCTACGCTGAATGTAACGGCTGT GTACGTAGAAACCATGTACTTCTAGTAGGTCTATGTATTACGAATTGACA AATTTGCTGACAGCTGAGACATGTCGTGCCTGACAGCTCGCCATTTCGAG CGCTGCTGGACATTTTCTCAGAGCTATCTCGGAAAGCAGGTAGTGGGTAC TTGGGGTGTTCTTGTTGCTGTATTGTCTTCGAAGAGAGGCTTCGCACGAG CGAGAGAAAAATAAGGGAGATATTTAGATAACACACAGGCCGTGTGTATG TATGTATGTATGTATGTATGTTGCCGCTGTTGTCGTTGTTGCTGCCGCGG AGATGTTTCCCTCTTTGGCCGTTCGTCGTTGACAGTCCCTAATTGTTGAC AGTCCCCCAGCTGTTGCTAACAGTCCCCGAGCGTTGTTGACAGTCCCGTT GCTGTTCACAGCCCCCGCTGTTTGTTGCGGTTGTTGATGATGACGTTGCT GCTGCTGCTGCTGCTCTTCTGGGCGGTGAATTTCCCACAGCAGCACGCAC CACACCGCAACGCGTTTCTTCTCACCCGTACATACAACCCCACCCGTCTT TCCCCCCCTTTGGCGTTTTTGTCGTTTTGACGTGTGACCAGGGCAAAGTG TTCACGGAGGAGGAGGACGCGTTCCTGCTGAACATGATGCACCGGTACGG ATACGGCAACTGGGAAGTCATCAGGATGGAAATCCGCAAGGTACGTACGT ACGTACGTACATACATACATACATACATACATACATACCGTCGGTGACAT GACACAAGATACCACACCCCCTGGACCGACTTTTTGGGCTCCGTTACTCC GTAACGAAGAGGGTGCCAGCACCGGACGACCACACATTTTCGGACAGCAG CCATCCCTCCTCGACTAGATCTTTCCAACCCCACCCCCTTTCGGCACTGG TACTCTTCTTGCTGGGGAGGGAGGGGTCGAGCTTTGAGATCTGTCCAGGG GGGCGGGGTTGTATCTTGTGTCACCTACGGTATACATGGTATCTCTTTAG TATGTATTAAGAATGTGTCAGAGGTAGTAGGTCGGGTTTATACATAGGTT CACCTTTTTTCTTTTTTTTTTTGTGCCTTCTACTATTCTCCAGTGCGGTT TTTTCAGGCGGCTTGGAAAAGGGTAGAGGATGCGTCCGTCTATGGTTGGG TTTGACTCAAAAACGGCCAAGACTTTTTTTTTTCGTTTCTGTTTTTCCTT TTGTTTGTGCGCTTGATTTGTAGAAATACAACATAAAAAGTGTTGGATTT TGTTTTTGCCTTTTGTCGGGGTGTATTTGTTTTTTATTTATTTTTATATT TTTTACTTTTTTGTACATGTATGTACTCCCTTTTATTTTATTTTATGTAC CCCGGGCTGTTTTGTTCTTCAAAACGCCACCTTTGCCTTGCAGCAGTATC GCACACCCTACCCTGGCCCCTTCCCAAAAGCGGTCCTGCTGCCAACACCA ACACTGCGACAAAGGACGTAGCCCAGCTTTGGTATATAGAAGTATGTACA TGAAAGATGCCTACCTTTATGATGATGATATCGAGCACCCCCCCCCCCCC CCCCCCTCCCCTTTATTTCGCTTTCTGGAATATAAGGCGTGGCAATTCCG GTTCGACTGGTTCTTCAAGAGCAGAAACGCGGCGGAACTGCAGAGGAGGG GTGACACTCTGATCCGCCTCGTGGAGAAGGAAAACGAGGAGCTGGAGGTA ATTTTTCTCTCTCCTTTTTTTTTTTTTCTCTCTCTCTCTCTTTTTGCGTG CGTCTGTTGAAAAAAAAATTGCTCGAAGCGCACGTCTTGCGAAGCAACAA ACAACATCGCTACGGCCGTCTACTTGGATGTTTTATCAATTTGGCTGCAC ACGCACCTCTCCTTTGTTGGTTGTTGTTGTTGTTGATGATCCTCCTCGCA TCCTTCCTGCACACCAAGCATCTCGTCTCCCGTAAAAAGCGTCCCTTTTT ACACTCCTGCTCAAACCACACCTCCCCCGCGCGGTTGACTTGAAAAATCA ATGGGTGACGCCACTGCAACAACCCCCCCCCCCCCTCGCAAGCGCTCGTC GTGCCTTTTCGGATGACCCGGTTAGTTGTCGTTCTGCATTTGGCTGTGCT TTCATGTTTATCCCCTATTTATCGTGTTCAATACCTACCTCCAAGTGGCA TCCTTAACCCCTTTGCAACGCCAAGAAATATTTATTTAATTGCAAGGCTG GGATTGGATCTTACTCGCACAGTCCCTGATGCAGACTCCTTCTCTATCAT CCCCATCATTTGGCCCCAAATCGATTTCGGGGCCAAATGATATAGCTTTA TGGGGCACCCGTTCTAAACTGGGGTCGAAAAGTTTGTTTTATGACTTGGG GGCCATAATGTGGCCCCAAATGCTTTGTGGTCCTAAAGGGGTTAAATAGA TGGTCTGCATTCTGCGTCCCGAGTCCCCAAGAGTTCCCCTCCCTAGCGCG CAACGTCTCTCACACGCACACCTGAACCCCGTCGGCTGTTGATCAAACCC TCAGCCACTAACTACTGCTCTGTCTGTGCTGTTGTTGTGCCTCCCTCCCA ATGAATATCTTTGTTGTCAGACATCGGGACACGGCGGCAAGAAGCGTAAG AGCTTCTCGGCTTCGGAGCAAACCGCGTCGTCGAAGAAGAAGAAGCCGTC CACTCCCGCCACCGGCGGCAAGAAGCAGCGCCGCCGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8734:1068..6107+

>mRNA_L-elsbetiae_contig8734.17764.1 ID=mRNA_L-elsbetiae_contig8734.17764.1|Name=mRNA_L-elsbetiae_contig8734.17764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig8734:1068..6107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTGCCTTGTTGAGCAGGAGCTGAGGACGAGAGGCAAGAGGCTGGA
GGCGCAGGGTGACGAGGAGGAGCACGCCGCCCGCCTCGAAAAGGAGGCGA
ATGCGATGTCGTGCCTTGTTGAGCAGGAGCTGAGGACGAGAGGCAAGAGG
CTGGAGGCGCAGGGTGACGAGGAGGAGCACGCCGCCCGCCTCGAAAAGGA
GGCGAATGCGTTGGAGCTTTCTCCCAAGGACCAGGAGCAGAAGAAGCGCC
TGATCGAGAACGCCTTCGGGGACTGGAACCGCAAGGATTTCCGCGCCTTC
GTCGCCGCCACGGAGCGACACGGCCGTTGGAGCTTTCTCCCAAGGACCAG
GAGCAGAAGAAGCGCCTGATCGAGAACGCCTTCGGGGACTGGAACCGCAA
GGATTTCCGCGCCTTCGTCGCCGCCACGGAGCGACACGGCCGGGACGACA
CGGAGGCGGTGGTGCGCGACGTGTGTCTGGAGACGGCCAAGACGGAGGAG
AACGTCCGCAAGTACATCAAGGGACGACACGGAGGCGGTGGTGCGCGACG
TGTGTCTGGAGACGGCCAAGACGGAGGAGAACGTCCGCAAGTACATCAAG
GTGTTCTGGAAGCGGTGCCGAGAGCTTAGCGACCACGGCAAGATCATGGA
GAAGATCGAGAAGGGAGAGAAGCGCATCTTCCGATCCAAGCAGATCCGAT
CGGCCATCGACAGCAAGGTCACCCGACACGCAAACCCGTGGAGCGACCTC
ACCATCAACTACTACGGCGGCAAGGTGTTCTGGAAGCGGTGCCGAGAGCT
TAGCGACCACGGCAAGATCATGGAGAAGATCGAGAAGGGAGAGAAGCGCA
TCTTCCGATCCAAGCAGATCCGATCGGCCATCGACAGCAAGGTCACCCGA
CACGCAAACCCGTGGAGCGACCTCACCATCAACTACTACGGCGGCAAGGG
CAAAGTGTTCACGGAGGAGGAGGACGCGTTCCTGCTGAACATGATGCACC
GGTACGGATACGGCAACTGGGAAGTCATCAGGATGGAAATCCGCAAGGGC
AAAGTGTTCACGGAGGAGGAGGACGCGTTCCTGCTGAACATGATGCACCG
GTACGGATACGGCAACTGGGAAGTCATCAGGATGGAAATCCGCAAGGCGT
GGCAATTCCGGTTCGACTGGTTCTTCAAGAGCAGAAACGCGGCGGAACTG
CAGAGGAGGGGTGACACTCTGATCCGCCTCGTGGAGAAGGAAAACGAGGA
GCTGGAGGCGTGGCAATTCCGGTTCGACTGGTTCTTCAAGAGCAGAAACG
CGGCGGAACTGCAGAGGAGGGGTGACACTCTGATCCGCCTCGTGGAGAAG
GAAAACGAGGAGCTGGAGACATCGGGACACGGCGGCAAGAAGCGTAAGAG
CTTCTCGGCTTCGGAGCAAACCGCGTCGTCGAAGAAGAAGAAGCCGTCCA
CTCCCGCCACCGGCGGCAAGAAGCAGCGCCGCCGATGAACATCGGGACAC
GGCGGCAAGAAGCGTAAGAGCTTCTCGGCTTCGGAGCAAACCGCGTCGTC
GAAGAAGAAGAAGCCGTCCACTCCCGCCACCGGCGGCAAGAAGCAGCGCC
GCCGATGA
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