mRNA_L-elsbetiae_contig8722.17754.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8722.17754.1
Unique NamemRNA_L-elsbetiae_contig8722.17754.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8722.17754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8722contigL-elsbetiae_contig8722:3022..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size597
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.69687-CDS-L-elsbetiae_contig8722:3021..36181622816952.69687-CDS-L-elsbetiae_contig8722:3021..3618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8722 3022..3618 +
1691683937.2769816-CDS-L-elsbetiae_contig8722:3021..36181691683937.2769816-CDS-L-elsbetiae_contig8722:3021..3618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8722 3022..3618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.7101002-UTR-L-elsbetiae_contig8722:3618..37251622816952.7101002-UTR-L-elsbetiae_contig8722:3618..3725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8722 3619..3725 +
1691683937.287941-UTR-L-elsbetiae_contig8722:3618..37251691683937.287941-UTR-L-elsbetiae_contig8722:3618..3725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8722 3619..3725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8722.17754.1prot_L-elsbetiae_contig8722.17754.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8722 3022..3618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8722.17754.1

>prot_L-elsbetiae_contig8722.17754.1 ID=prot_L-elsbetiae_contig8722.17754.1|Name=mRNA_L-elsbetiae_contig8722.17754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
GVCRQFTSKGSCRFGARCIFQHVATTKRKDNGGGDGGGAGKDGGGQSAAA
QAAPTPAAKKARKTYAPNGGGASGGKGTGGDGAAKGADEWRRRSLPVVRG
RSPALAIAVTPLSGKLLLRPRVTKTVAQGGAHELRRCLYLLRSRPRPGLM
GPARVEMVCQVAQASAVYLQGEDCRHDAMRCIEAEIEVPRVRADFVRF*
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mRNA from alignment at L-elsbetiae_contig8722:3022..3725+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8722.17754.1 ID=mRNA_L-elsbetiae_contig8722.17754.1|Name=mRNA_L-elsbetiae_contig8722.17754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=704bp|location=Sequence derived from alignment at L-elsbetiae_contig8722:3022..3725+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGTGCCGGCAGTTCACGAGCAAAGGGTCATGCCGCTTCGGCGCCCG
CTGCATCTTCCAGCACGTCGCCACCACCAAGCGCAAGGACAACGGCGGCG
GCGATGGCGGGGGTGCCGGCAAGGACGGCGGCGGGCAATCGGCGGCAGCA
CAGGCGGCACCAACGCCGGCGGCCAAGAAGGCCAGGAAGACCTACGCGCC
CAACGGGGGAGGGGCGAGCGGCGGCAAGGGCACCGGTGGAGACGGCGCGG
CTAAGGGTGCCGACGAATGGCGGCGCAGGTCTCTCCCCGTTGTACGGGGG
AGGTCGCCCGCACTTGCCATCGCAGTCACGCCTCTTTCAGGCAAATTACT
GTTGCGGCCCCGGGTAACCAAGACTGTGGCCCAAGGTGGGGCCCATGAAC
TTCGCCGCTGTCTTTATTTGCTGCGTAGTAGGCCCCGGCCCGGATTAATG
GGACCGGCGCGGGTGGAAATGGTGTGTCAGGTTGCGCAAGCCAGTGCTGT
TTACTTGCAGGGGGAAGATTGTAGACACGATGCAATGCGGTGTATCGAAG
CAGAAATCGAGGTACCGCGCGTTCGAGCCGACTTCGTGCGGTTTTGATTT
GGTAGAAAGAAAGGATAGAAAGAAAGGATATCCGGAGGTCGAGATGGTAG
CCGACATTATTGCGTGCGGTGCGAGCATTCCAGTGGTAGGACCGATAGAC
CTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8722:3022..3725+

>mRNA_L-elsbetiae_contig8722.17754.1 ID=mRNA_L-elsbetiae_contig8722.17754.1|Name=mRNA_L-elsbetiae_contig8722.17754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig8722:3022..3725+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGTGCCGGCAGTTCACGAGCAAAGGGTCATGCCGCTTCGGCGCCCG
CTGCATCTTCCAGCACGTCGCCACCACCAAGCGCAAGGACAACGGCGGCG
GCGATGGCGGGGGTGCCGGCAAGGACGGCGGCGGGCAATCGGCGGCAGCA
CAGGCGGCACCAACGCCGGCGGCCAAGAAGGCCAGGAAGACCTACGCGCC
CAACGGGGGAGGGGCGAGCGGCGGCAAGGGCACCGGTGGAGACGGCGCGG
CTAAGGGTGCCGACGAATGGCGGCGCAGGTCTCTCCCCGTTGTACGGGGG
AGGTCGCCCGCACTTGCCATCGCAGTCACGCCTCTTTCAGGCAAATTACT
GTTGCGGCCCCGGGTAACCAAGACTGTGGCCCAAGGTGGGGCCCATGAAC
TTCGCCGCTGTCTTTATTTGCTGCGTAGTAGGCCCCGGCCCGGATTAATG
GGACCGGCGCGGGTGGAAATGGTGTGTCAGGTTGCGCAAGCCAGTGCTGT
TTACTTGCAGGGGGAAGATTGTAGACACGATGCAATGCGGTGTATCGAAG
CAGAAATCGAGGTACCGCGCGTTCGAGCCGACTTCGTGCGGTTTTGAGGG
GTGTGCCGGCAGTTCACGAGCAAAGGGTCATGCCGCTTCGGCGCCCGCTG
CATCTTCCAGCACGTCGCCACCACCAAGCGCAAGGACAACGGCGGCGGCG
ATGGCGGGGGTGCCGGCAAGGACGGCGGCGGGCAATCGGCGGCAGCACAG
GCGGCACCAACGCCGGCGGCCAAGAAGGCCAGGAAGACCTACGCGCCCAA
CGGGGGAGGGGCGAGCGGCGGCAAGGGCACCGGTGGAGACGGCGCGGCTA
AGGGTGCCGACGAATGGCGGCGCAGGTCTCTCCCCGTTGTACGGGGGAGG
TCGCCCGCACTTGCCATCGCAGTCACGCCTCTTTCAGGCAAATTACTGTT
GCGGCCCCGGGTAACCAAGACTGTGGCCCAAGGTGGGGCCCATGAACTTC
GCCGCTGTCTTTATTTGCTGCGTAGTAGGCCCCGGCCCGGATTAATGGGA
CCGGCGCGGGTGGAAATGGTGTGTCAGGTTGCGCAAGCCAGTGCTGTTTA
CTTGCAGGGGGAAGATTGTAGACACGATGCAATGCGGTGTATCGAAGCAG
AAATCGAGGTACCGCGCGTTCGAGCCGACTTCGTGCGGTTTTGA
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