mRNA_L-elsbetiae_contig8721.17752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8721.17752.1
Unique NamemRNA_L-elsbetiae_contig8721.17752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.210e-36
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:   10 KVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            +VMELLKLFGVPYVVAPMEAEAQCC+LEQLRLVDGTVTDDSDAFAFGGRAVYKNIF+ERK+VEAYLLPDAEK
Sbjct: 1296 EVMELLKLFGVPYVVAPMEAEAQCCMLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEK 1367
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.070e-36
Identity = 67/72 (93.06%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:   10 KVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            +VM+LLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIF++RK+VEAYLLPDAEK
Sbjct: 1307 EVMDLLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSDRKFVEAYLLPDAEK 1378
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: K3WLQ1_GLOUD (XPGI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLQ1_GLOUD)

HSP 1 Score: 105 bits (262), Expect = 6.680e-27
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   13 VMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            VMELL+LFGVPY+V PMEAEAQC  LEQL LVDG +TDDSD F FGG+ VYKNIF+ +K+VEA+   D EK
Sbjct:    5 VMELLRLFGVPYLVCPMEAEAQCAALEQLGLVDGIITDDSDIFPFGGKKVYKNIFHNQKFVEAFFAQDIEK 75
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A835RFP9_VANPL (XPGI domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RFP9_VANPL)

HSP 1 Score: 102 bits (253), Expect = 2.210e-26
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   19 ELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAE 222
            ELL++FG+PY++APMEAEAQC  +E + LVDG VTDDSD F FG R VYKNIF++RKYVE Y + D E
Sbjct:   26 ELLQMFGLPYIIAPMEAEAQCAYMEMIHLVDGVVTDDSDVFLFGARNVYKNIFDDRKYVETYFMKDIE 93
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A162R596_MUCCL (Uncharacterized protein n=1 Tax=Mucor lusitanicus CBS 277.49 TaxID=747725 RepID=A0A162R596_MUCCL)

HSP 1 Score: 105 bits (263), Expect = 4.710e-26
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   13 VMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            + ELLKLFG+PY+V+PMEAEAQC  LE L+LVDGTVTDDSD F FG   VYKN+FN+++YVE YL  D E+
Sbjct:  132 IQELLKLFGIPYLVSPMEAEAQCATLEALKLVDGTVTDDSDVFLFGASRVYKNMFNQQRYVECYLAQDVER 202
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.540e-26
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   13 VMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            +M LL+LFGVPY+VAPMEAEAQC VLE L LVDG V+DDSD+F FG RAVYKNIF+ERKYVEAY   D E+
Sbjct:  389 IMHLLQLFGVPYLVAPMEAEAQCAVLETLGLVDGVVSDDSDSFLFGARAVYKNIFDERKYVEAYRAEDLER 459
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A5K1BTR9_9MAGN (XPGI domain-containing protein (Fragment) n=15 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BTR9_9MAGN)

HSP 1 Score: 98.6 bits (244), Expect = 1.150e-25
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   19 ELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLL 210
            ELL++FG+PY++APMEAEAQC  +E + LVDG VTDDSDAF FG R VYKNIF++RKYVE Y +
Sbjct:    1 ELLQMFGLPYIIAPMEAEAQCAYMELIGLVDGVVTDDSDAFLFGARNVYKNIFDDRKYVETYFM 64
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A836CHS7_9STRA (XPGI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.360e-25
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   10 KVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPD 216
            +V ELL L GVPY+VAPMEAEAQC  LE+L LVDG VTDDSDAF FG +AVYKNIF ++KYVEAYLLPD
Sbjct:  184 EVKELLHLLGVPYLVAPMEAEAQCVELERLGLVDGIVTDDSDAFVFGAKAVYKNIFEDQKYVEAYLLPD 252
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BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A4D9D712_9STRA (XPGI domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D712_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.940e-25
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   13 VMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAEK 225
            +M LL+LFGVP++VAPMEAEAQC VLE L LVDG V+DDSD+F FG RAVYKNIF+ERKYVEAY   D E+
Sbjct:  929 IMHLLQLFGVPFLVAPMEAEAQCAVLETLGLVDGVVSDDSDSFLFGARAVYKNIFDERKYVEAYRAEDLER 999
[Close]
BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Match: A0A6I9UEP2_SESIN (DNA repair protein UVH3 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UEP2_SESIN)

HSP 1 Score: 107 bits (267), Expect = 1.950e-25
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   19 ELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFNERKYVEAYLLPDAE 222
            ELL++FG+PY++APMEAEAQC  +EQ  LVDG VTDDSDAF FG R+VYKNIF++RKYVE YL+ D E
Sbjct:  880 ELLQMFGIPYIIAPMEAEAQCAFMEQSNLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETYLMKDIE 947
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8721.17752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXJ8_9PHAE1.210e-3694.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY4_ECTSI3.070e-3693.06DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
K3WLQ1_GLOUD6.680e-2770.42XPGI domain-containing protein n=1 Tax=Globisporan... [more]
A0A835RFP9_VANPL2.210e-2666.18XPGI domain-containing protein n=1 Tax=Vanilla pla... [more]
A0A162R596_MUCCL4.710e-2667.61Uncharacterized protein n=1 Tax=Mucor lusitanicus ... [more]
W7TX36_9STRA5.540e-2674.65Dna repair enzyme n=2 Tax=Nannochloropsis gaditana... [more]
A0A5K1BTR9_9MAGN1.150e-2568.75XPGI domain-containing protein (Fragment) n=15 Tax... [more]
A0A836CHS7_9STRA1.360e-2576.81XPGI domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9D712_9STRA1.940e-2573.24XPGI domain-containing protein n=1 Tax=Nannochloro... [more]
A0A6I9UEP2_SESIN1.950e-2570.59DNA repair protein UVH3 isoform X1 n=2 Tax=Sesamum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8721contigL-elsbetiae_contig8721:7527..8317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D7FZY4
Preferred namegen-1
KEGG koko:K10846
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0008821,GO:0009987,GO:0012501,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0023052,GO:0031570,GO:0033554,GO:0034641,GO:0035556,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0051726,GO:0061062,GO:0061064,GO:0065007,GO:0071704,GO:0072395,GO:0072401,GO:0072422,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:0140097,GO:1901360,GO:2000026
EggNOG free text desc.nucleotide-excision repair, DNA incision, 3'-to lesion
EggNOG OGsCOG0258@1,KOG2520@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size225
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8721.17752.1prot_L-elsbetiae_contig8721.17752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8721 7542..8317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.5718906-UTR-L-elsbetiae_contig8721:7526..75411622816952.5718906-UTR-L-elsbetiae_contig8721:7526..7541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8721 7527..7541 +
1691683937.201689-UTR-L-elsbetiae_contig8721:7526..75411691683937.201689-UTR-L-elsbetiae_contig8721:7526..7541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8721 7527..7541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.5843308-CDS-L-elsbetiae_contig8721:7541..75981622816952.5843308-CDS-L-elsbetiae_contig8721:7541..7598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 7542..7598 +
1691683937.2185192-CDS-L-elsbetiae_contig8721:7541..75981691683937.2185192-CDS-L-elsbetiae_contig8721:7541..7598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 7542..7598 +
1622816952.5985656-CDS-L-elsbetiae_contig8721:8164..83171622816952.5985656-CDS-L-elsbetiae_contig8721:8164..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 8165..8317 +
1691683937.229262-CDS-L-elsbetiae_contig8721:8164..83171691683937.229262-CDS-L-elsbetiae_contig8721:8164..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 8165..8317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8721.17752.1

>prot_L-elsbetiae_contig8721.17752.1 ID=prot_L-elsbetiae_contig8721.17752.1|Name=mRNA_L-elsbetiae_contig8721.17752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVY
KNIFNERKYVEAYLLPDAEK
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mRNA from alignment at L-elsbetiae_contig8721:7527..8317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8721.17752.1 ID=mRNA_L-elsbetiae_contig8721.17752.1|Name=mRNA_L-elsbetiae_contig8721.17752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=791bp|location=Sequence derived from alignment at L-elsbetiae_contig8721:7527..8317+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTGTCAAGGTGATGGAGCTCCTGAAGCTGTTCGGAGTGCCGTACGT
GGTGGCGCCGATGGAGGCCGAGGTACGATCTTCGTCGTGCGGTTTAGTGT
GCTACGTTTGTAGGAACGGCTGTTTTGTTGCCACCCGACGATTGAACTGT
CGCTTTCTGGTGCATCTGTTGAATTGACGCCACAGCGAGCAGTGCGTCAG
GATACGTATGTAGCAGCTTGTTTTTCAAGTGGGCACATGCTTGTGCTTCG
GACTTTTTTTTTGTTTCCAGTGCTCGATGGGCTCCCTGTCACGAGGACAT
CTTGCCAGAGTACTGAACCGTGGTAACACAGCAGGGTTCCCTTCCCAAGG
CCCGGACTGTAGACACTATTTATAACCACTGCTGGGAGTTGATCGGACGC
ATGCGGCCCTGGAGTGTTTGTTACCTCTCTGTTTCATCTTCTCCCTCTTC
TTATTTCGTTCGTTCTTGCGGTCTTCGGATTGTTGCTGTATACTTTCCTT
CTGCGGTTTCATCCTCCTAGTTGTCCCGCAGAAAACACAGCTGAACCCCC
AGCTCTCGCGACGCTTTCCTGTCATCGGCTTTTGTCTTGTGACCCTGCGA
CCCCTCCCCCCCTCCCCTTCCGCGCTGTCGCGGTCCAGGCGCAGTGCTGC
GTGCTGGAGCAGCTGCGGCTGGTGGACGGCACGGTCACCGACGACAGCGA
CGCCTTCGCCTTCGGCGGCAGGGCCGTGTACAAGAACATCTTCAACGAGA
GGAAGTACGTCGAGGCTTACCTCCTGCCCGACGCCGAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8721:7527..8317+

>mRNA_L-elsbetiae_contig8721.17752.1 ID=mRNA_L-elsbetiae_contig8721.17752.1|Name=mRNA_L-elsbetiae_contig8721.17752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig8721:7527..8317+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTCCTGAAGCTGTTCGGAGTGCCGTACGTGGTGGCGCCGATGGA
GGCCGAGATGGAGCTCCTGAAGCTGTTCGGAGTGCCGTACGTGGTGGCGC
CGATGGAGGCCGAGGCGCAGTGCTGCGTGCTGGAGCAGCTGCGGCTGGTG
GACGGCACGGTCACCGACGACAGCGACGCCTTCGCCTTCGGCGGCAGGGC
CGTGTACAAGAACATCTTCAACGAGAGGAAGTACGTCGAGGCTTACCTCC
TGCCCGACGCCGAAAAGGCGCAGTGCTGCGTGCTGGAGCAGCTGCGGCTG
GTGGACGGCACGGTCACCGACGACAGCGACGCCTTCGCCTTCGGCGGCAG
GGCCGTGTACAAGAACATCTTCAACGAGAGGAAGTACGTCGAGGCTTACC
TCCTGCCCGACGCCGAAAAG
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