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Homology
BLAST of mRNA_L-elsbetiae_contig872.17749.1 vs. uniprot
Match: D7FWL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL3_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 2.920e-12 Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 2
Query: 509 GGGRAAPPGRACVWPFSPCPPETGGGGGCSLRAAGTPSGTSSASPSASRAASLSRV 676
G G+A P GRAC F+PCP ETGGGG CS AAGTPSGTSSAS SASRAA LSR
Sbjct: 3 GEGKATPGGRACGSSFNPCPRETGGGGACSSPAAGTPSGTSSASLSASRAACLSRA 58
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_002350.2 |
| Exons | 4 |
| Model size | 756 |
| Cds size | 756 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816952.1064255-CDS-L-elsbetiae_contig872:26015..26098 | 1622816952.1064255-CDS-L-elsbetiae_contig872:26015..26098 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 26016..26098 - |
| 1691683936.8365188-CDS-L-elsbetiae_contig872:26015..26098 | 1691683936.8365188-CDS-L-elsbetiae_contig872:26015..26098 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 26016..26098 - |
| 1622816952.1172786-CDS-L-elsbetiae_contig872:26545..26709 | 1622816952.1172786-CDS-L-elsbetiae_contig872:26545..26709 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 26546..26709 - |
| 1691683936.847352-CDS-L-elsbetiae_contig872:26545..26709 | 1691683936.847352-CDS-L-elsbetiae_contig872:26545..26709 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 26546..26709 - |
| 1622816952.1289003-CDS-L-elsbetiae_contig872:27040..27179 | 1622816952.1289003-CDS-L-elsbetiae_contig872:27040..27179 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 27041..27179 - |
| 1691683936.8568208-CDS-L-elsbetiae_contig872:27040..27179 | 1691683936.8568208-CDS-L-elsbetiae_contig872:27040..27179 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 27041..27179 - |
| 1622816952.1406822-CDS-L-elsbetiae_contig872:29444..29814 | 1622816952.1406822-CDS-L-elsbetiae_contig872:29444..29814 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 29445..29814 - |
| 1691683936.8728342-CDS-L-elsbetiae_contig872:29444..29814 | 1691683936.8728342-CDS-L-elsbetiae_contig872:29444..29814 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig872 29445..29814 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig872.17749.1 >prot_L-elsbetiae_contig872.17749.1 ID=prot_L-elsbetiae_contig872.17749.1|Name=mRNA_L-elsbetiae_contig872.17749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MSNHHRANVFEPTLSSGVWEGLSYRQGCEGLDETRWTHTSLVFTDIRKGG
RLTPRGEAPAWGREEPGSAIFRLCGKGISHWRGRQIHFALRGFVEPGGGG
DQHLRITLIKRHNGSFHNVVHYGGTLSQNGCAIQGTFADGHFRLTQVDPV
SHVLARELTGAWDGESSCRRGGQSSTTWKSVRLAFQPLPPGDGRGWGMLV
TGGGDSLWNKQRIPFCITGRLSLPGLEVELEKQHVEGYHNRIAYFGRVLS
GF back to topmRNA from alignment at L-elsbetiae_contig872:26016..29814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig872.17749.1 ID=mRNA_L-elsbetiae_contig872.17749.1|Name=mRNA_L-elsbetiae_contig872.17749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3799bp|location=Sequence derived from alignment at L-elsbetiae_contig872:26016..29814- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAACCACCATCGTGCGAACGTGTTCGAGCCGACGCTCTCGAGTGG
CGTGTGGGAAGGCCTCAGCTACCGACAGGGCTGCGAAGGGCTCGACGAGA
CGCGCTGGACGCACACGTCCCTGGTGTTCACCGACATCCGGAAGGGCGGA
CGGTTGACACCGAGAGGGGAAGCTCCGGCCTGGGGCAGAGAGGAGCCCGG
CTCAGCGATCTTCAGGCTTTGCGGAAAGGGGATCTCGCACTGGAGAGGGA
GGCAGATTCACTTCGCGCTTAGAGGGTTCGTGGAGCCTGGCGGTGGTGGT
GACCAGCATCTGAGGATTACCTTGATAAAGCGTCACAATGGGAGCTTCCA
CAACGTCGTCCACTATGGAGGTCAGCAGTGTGTAGCCGCCGAGATGTTTG
TGCAGGATCAAACGGTAGCTTTGGTCGACCTACATAGTTGTCTCTGTCGA
TCTCGCTCTCTGGTGGGGTGCGTGTCGCTGCCTGCCGAAAAGAAGGCGTT
CACAAAGAGCATAGATAAGGATACCCGCCGACAAGATGTAAAAAACTGAA
AGGGAAAACTGGCTTTTTTCCGTTCATCGCGGAAACCAGGCCGTTCAGTG
ATCTCATCTGCCTGCGTGGTTGGAAAGAAGATTATTTGTTAAAAATTCGG
CAGCAACCCGGTGTGCACCTCTGTGAGCCTTCGCCCTCTGGCTCTCTCTC
TCTCTTTCTCTCTTGTCAAAGTTCTAGATAGATATCTAGATACGTCAGTT
CTGTGATGGTCGGAGACGAAGAGCTTCCGGTAGAGAGAATGTTAGATTCT
GAGTACGACACAATCCTAGGAGCGCATGGTTCGAGAGAGACACATCGATT
TTTACGGTGGAAATCGTCTGGAGACACTTGTTGTGCAGCCGTCACGTGAC
ATCTCTGAATCTTGTGTGGCATCGTTATGGTAGCACTGCTTGCCGTCGTC
TACGTGTATGTAGAAGCATTGCCTGTAGCTACATAGTCGTCTACACCGTG
TAGGTAGTAGTGAGGTCATCGTTATGTAGGCTCATAGTGAGGCCATTGTT
ATGTGGGCTCACTGCTTGCAGTTGTCTTATCTATCTACATGTAATCTAGC
AGTAAGCCATCGTGAGGTAGGCTCTATCTAGATATATACGTACACATATC
TAGACTATGCGAGGGCAGTTTTGGCCTTTGGTGCTGATGGCGGCGAAACC
ACATTGATGTCAACGTTGGGCAAGCCACAGATAGATCAGACACAGCCAGG
TGATGAAGTTAATGTTGCTGCACCCTCATCTGAACGGTACCAGCGGAGCG
GTAGCAAATCAGGGGGCAAGTAGGCAACACACAGCAAATATAATGTTTCC
ATCTTATCGCCTTCTGGCCAAGGATAACCAGAGCAGAAACGACCGCAGGG
TTTTACAACAAGTCTTGATCCACCCCGTACTCTGTTTGGTATCATCTACG
TCTTACAAATCTAGCTTTTTGATCGGCATGCCAAATAAAGGGGATGCCTT
AGATATACATATATAGTCTAGATATGCTGCATATATCGGAAAACAACGAG
CTCCCTTCGCCCTGACCACCCCCCGGCTTTGTTGGGGTACCAAGATAGTG
GTGTTGGCTGTTCCAGTTTTGTTTTTACCTCACACAGCGTGTAGAGGGGA
GCGGAGGGCCCCAGATCCGATATCTGTTTTATTGTTGCTTTGCTGGCCCT
TCGGGTCCATTTTATTTTTCGTGTACCTTTTCTTGGGTATAAGTTGGCCT
GTGACCACGGGAATTGACCGCATCAAGTGTTGGATTAGTACGGACATTGA
GAGGTACTGGGTGGAGAGATCGGAACGGTTTTTAATGTGAAGACAACATA
CATACATACATACATATGTATCCTCAGAATACTCAAGTCAGTTATCTCCT
TTGCGCCTTTCTGATTTTCGTTTTTACGCTAGCATTCCACGCTGCCGTGC
GGTTAAATAGTACACCAAGTCACTTTTTCGTACATATGGAGCTACTGCTG
TATGTAGTCTTCTAGATATATCTACAAGTATCCAAGATGAAAAAAAATGG
CATCTCCTACAGGTGGAGATCCTGCGGTGACTACATAGACTATGTATTGT
AAAGTGTCGCGAGCGCACATGAAATAACGAATTTCCTTTTCTATCTAGGC
CGTTGCCGTCGCATAGCAAACACATCGAAAGCGTGTATACATGGCCTTTT
CGGTCGCGTGTGGCTGTCATTGGTCTCTTCAGTTTTGTTTCATCAATTCG
GCGAGATTTACCAGCCTGCCCGGGTCAGCCGAAAAAGTAAGCCCAGATGA
TAAATGGCCGCAAACCATTTCACACAATGATGGTGTTTTCGCGTCCAGTC
AGTGCTTGACTCTCGCTCTGCAATAATTCTGTTTTTTTTCCAAAAAAATA
GAGTCTCTTTGATTTCCTCTGTCGGGATCTTTGGACGCACAGCATGGAAA
ATTTTCGGGTATTTATGTATACAAAAAGTGTATCTAGACTAGAAACTTGC
GGGTAAACCCGCCCCGAAATTGTTCTCTCGTTCTAGACATGGCCTGGCAG
TATTTCGGCGTGCCCAGAGCCAGTCAACCACGCCGCAGGTACACTCGTCC
AGACCTACCTGCGTTTCCTTCCATCCTTTCCTCAGGAACGCTGTCGCAGA
ACGGTTGCGCGATCCAGGGGACTTTCGCCGACGGGCATTTCAGGCTGACG
CAGGTGGACCCCGTGAGCCACGTGCTCGCGAGGGAGCTAACCGGGGCCTG
GGACGGCGAGAGCAGCTGCCGGAGGTACGTTCGTATGTATAAATACATGC
GCAACAACAATAGTGCACGTGGGTCGTTGTCGATCCCGTTCCCGCACGCG
AATCAAGACACTTCTCTTTCCTGTAAGAAGCCTGTGAGGATAAATAGATA
AATGGTGAAGAAACTTGCTGAAAAACATCGCGTCGAATCACGTCGCCTCG
CCGGAGTTACGTGGGTATGTATGTATGATATTGACAATCTCAGTTGCTAG
CTTTTCCTCTGGGTGTACATGCATGCATGCGTGCCCCCTTCTGTCTCTCT
TCTCACCCCACGAGCCGTTTGTGGGTTGTTTTACGCTTTGCTGTGCACGC
TGCAGGGGGGGGCAGAGCAGCACCACCTGGAAGAGCGTGCGTCTGGCCTT
TCAGCCCCTGCCCCCCGGAGACGGGAGGGGGTGGGGGATGCTCGTTACGG
GCGGCGGGGACTCCCTCTGGAACAAGCAGCGCATCCCCTTCTGCATCACG
GGCCGCCTCTCTCTCCCGGGTAAAGGTTCTGCTCTGCCGCTCTCCAGTCT
CTATTATTTGTGAAGCCTCACGCCGAAATTCGGAGACCTCACCCCTCGAG
AGGTGCTCGATTTTCTGTCGCAGAGAGAAGCGAGTGCCCTATCCCTGCAT
GTTGTTGATAGGTCCCCGCGTCGGCCCAGCCGGCTTAAAACGTGGGCGTG
TTGCAAAGCCAGCACGCCCTTTTGCTCACGCACCCTTGTGATATTTTGCC
AGTGCGGCCGTTTGCGTACGGCCCTGCTACGTAGAGCCAAGCACGCTCCG
TTTAGAAAGCTCGTCTCGCTTAAGGCTTTCTGACTTTCGAGTGTCTGAGC
AAATTGTACTCGGTTAGTGCCCCCCCGCCCCCCCCGCCCTTCACGAGTTT
AATGTACCTTTCCATCGTCGTTCTGGCCCCGAAACTATGTAATCGGGATG
TCGGGACAAAAAAAAGGTCTAGAGGTGGAGCTGGAGAAGCAACACGTGGA
GGGCTACCACAACCGCATCGCGTACTTCGGCAGGGTGCTGTCGGGCTTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig872:26016..29814- >mRNA_L-elsbetiae_contig872.17749.1 ID=mRNA_L-elsbetiae_contig872.17749.1|Name=mRNA_L-elsbetiae_contig872.17749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig872:26016..29814- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAACCACCATCGTGCGAACGTGTTCGAGCCGACGCTCTCGAGTGG
CGTGTGGGAAGGCCTCAGCTACCGACAGGGCTGCGAAGGGCTCGACGAGA
CGCGCTGGACGCACACGTCCCTGGTGTTCACCGACATCCGGAAGGGCGGA
CGGTTGACACCGAGAGGGGAAGCTCCGGCCTGGGGCAGAGAGGAGCCCGG
CTCAGCGATCTTCAGGCTTTGCGGAAAGGGGATCTCGCACTGGAGAGGGA
GGCAGATTCACTTCGCGCTTAGAGGGTTCGTGGAGCCTGGCGGTGGTGGT
GACCAGCATCTGAGGATTACCTTGATAAAGCGTCACAATGGGAGCTTCCA
CAACGTCGTCCACTATGGAGATGTCGAACCACCATCGTGCGAACGTGTTC
GAGCCGACGCTCTCGAGTGGCGTGTGGGAAGGCCTCAGCTACCGACAGGG
CTGCGAAGGGCTCGACGAGACGCGCTGGACGCACACGTCCCTGGTGTTCA
CCGACATCCGGAAGGGCGGACGGTTGACACCGAGAGGGGAAGCTCCGGCC
TGGGGCAGAGAGGAGCCCGGCTCAGCGATCTTCAGGCTTTGCGGAAAGGG
GATCTCGCACTGGAGAGGGAGGCAGATTCACTTCGCGCTTAGAGGGTTCG
TGGAGCCTGGCGGTGGTGGTGACCAGCATCTGAGGATTACCTTGATAAAG
CGTCACAATGGGAGCTTCCACAACGTCGTCCACTATGGAGGAACGCTGTC
GCAGAACGGTTGCGCGATCCAGGGGACTTTCGCCGACGGGCATTTCAGGC
TGACGCAGGTGGACCCCGTGAGCCACGTGCTCGCGAGGGAGCTAACCGGG
GCCTGGGACGGCGAGAGCAGCTGCCGGAGGAACGCTGTCGCAGAACGGTT
GCGCGATCCAGGGGACTTTCGCCGACGGGCATTTCAGGCTGACGCAGGTG
GACCCCGTGAGCCACGTGCTCGCGAGGGAGCTAACCGGGGCCTGGGACGG
CGAGAGCAGCTGCCGGAGGGGGGGGCAGAGCAGCACCACCTGGAAGAGCG
TGCGTCTGGCCTTTCAGCCCCTGCCCCCCGGAGACGGGAGGGGGTGGGGG
ATGCTCGTTACGGGCGGCGGGGACTCCCTCTGGAACAAGCAGCGCATCCC
CTTCTGCATCACGGGCCGCCTCTCTCTCCCGGGGGGGGGCAGAGCAGCAC
CACCTGGAAGAGCGTGCGTCTGGCCTTTCAGCCCCTGCCCCCCGGAGACG
GGAGGGGGTGGGGGATGCTCGTTACGGGCGGCGGGGACTCCCTCTGGAAC
AAGCAGCGCATCCCCTTCTGCATCACGGGCCGCCTCTCTCTCCCGGGTCT
AGAGGTGGAGCTGGAGAAGCAACACGTGGAGGGCTACCACAACCGCATCG
CGTACTTCGGCAGGGTGCTGTCGGGCTTCGTCTAGAGGTGGAGCTGGAGA
AGCAACACGTGGAGGGCTACCACAACCGCATCGCGTACTTCGGCAGGGTG
CTGTCGGGCTTC back to top
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