mRNA_L-elsbetiae_contig872.17747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig872.17747.1
Unique NamemRNA_L-elsbetiae_contig872.17747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: D7FWL2_ECTSI (Pc21g14320 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.390e-23
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 3 
Query:    3 REEEERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVYRS 164
            R+EEERCK+C MGS+DALLLPCGHL  C SCA VL VCPIC+ADIYRVQPVYRS
Sbjct:  115 RQEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRS 168
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A7K5WEX3_9SYLV (XIAP ligase (Fragment) n=1 Tax=Hylia prasina TaxID=208073 RepID=A0A7K5WEX3_9SYLV)

HSP 1 Score: 62.0 bits (149), Expect = 2.650e-8
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:    6 EEEERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVY 158
            +EE+ CK+C    +  + +PCGHL  C+ CA +LS CP+C+ADI ++Q ++
Sbjct:  394 QEEKLCKICMAKDVSVVFIPCGHLVACKECAQLLSECPLCRADITKIQDIF 444
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A8J2R959_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2R959_9NEOP)

HSP 1 Score: 57.0 bits (136), Expect = 1.440e-6
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 3 
Query:   12 EERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVYRS 164
            E+ CK+C    L+ +LL CGH+  C SCA  L+ CPIC+  + R   V+RS
Sbjct:  391 EDSCKICMAAPLECVLLECGHIAACTSCARQLAECPICRQYVVRAVRVFRS 441
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A6B2KW84_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW84_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.690e-6
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:   21 CKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVY 158
            C++C+   +D ++L CGHL LC+ CAG +  CPIC+ DI R + VY
Sbjct: 1218 CRICYDRKIDVVILECGHLVLCEVCAGNVKKCPICRKDITRTKLVY 1263
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A2H1V888_SPOFR (SFRICE_001503 n=3 Tax=Spodoptera TaxID=7106 RepID=A0A2H1V888_SPOFR)

HSP 1 Score: 55.5 bits (132), Expect = 4.960e-6
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 3 
Query:   12 EERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVYRS 164
            EE CK+C    L+ +LL CGH+  C SCA  L+ CPIC+  + R    +RS
Sbjct:  408 EECCKICMAAPLECVLLECGHIAACTSCAKQLAECPICRQYVVRAVRFFRS 458
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A7I0YX93_DANPL (E3 ubiquitin-protein ligase RNF34 n=2 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A7I0YX93_DANPL)

HSP 1 Score: 55.1 bits (131), Expect = 6.560e-6
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 3 
Query:   12 EERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVYRS 164
            E+ CK+C    L+ +LL CGH+  C SCA  L+ CPIC+  + R    +RS
Sbjct:  363 EDSCKICMAAPLECVLLECGHIAACTSCARQLAECPICRQYVVRAVRFFRS 413
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A2B4RII4_STYPI (Tumor susceptibility gene 101 protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RII4_STYPI)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 3 
Query:    6 EEEERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSV----CPICKADIYRVQPVYRS 164
            E ++ C +C     +++L+PCGHLGLC +CA  +      CP+C+ADI +V  VY S
Sbjct:  182 ESKKECIICMGEEPNSVLIPCGHLGLCITCAREVQRNSKRCPVCRADINQVHQVYES 238
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: F1KY53_ASCSU (RING finger and SPRY domain-containing protein 1 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KY53_ASCSU)

HSP 1 Score: 53.5 bits (127), Expect = 2.410e-5
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:   12 EERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADI 137
            ++ C +C+  S+D +L PCGH GLC SC+  L +CP+C+  I
Sbjct:  500 DDSCHICYSSSIDTVLKPCGHSGLCFSCSEQLELCPLCRVHI 541
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: A0A6A5BJ22_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BJ22_NAEFO)

HSP 1 Score: 53.1 bits (126), Expect = 3.550e-5
Identity = 19/55 (34.55%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:    3 REEEERCKMCWMGSLDALLLPCGHLGLCQSCAGVLS--VCPICKADIYRVQPVYR 161
            R+++++C +C  G ++ +L+PCGH+ LC++CA  L+   CP C+ +I ++  V++
Sbjct:  965 RQDQDQCVVCMDGEINVVLVPCGHMILCETCANQLTNKKCPTCRQNISQIVKVFK 1019
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BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Match: UPI00077A0D3D (mitochondrial ubiquitin ligase activator of NFKB 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A0D3D)

HSP 1 Score: 52.8 bits (125), Expect = 3.810e-5
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 3 
Query:   12 EERCKMCWMGSLDALLLPCGHLGLCQSCAGVLSVCPICKADIYRVQPVYRS 164
            +E C +C     + ++L CGH+  C  CA  ++ CP+C+  IYR+ P YRS
Sbjct:  285 QEACVICMDRPRNVVILDCGHICCCLDCARQVNNCPVCRRQIYRLVPTYRS 335
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig872.17747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FWL2_ECTSI1.390e-2381.48Pc21g14320 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7K5WEX3_9SYLV2.650e-843.14XIAP ligase (Fragment) n=1 Tax=Hylia prasina TaxID... [more]
A0A8J2R959_9NEOP1.440e-645.10(African queen) hypothetical protein n=1 Tax=Danau... [more]
A0A6B2KW84_9EUKA1.690e-647.83RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A2H1V888_SPOFR4.960e-645.10SFRICE_001503 n=3 Tax=Spodoptera TaxID=7106 RepID=... [more]
A0A7I0YX93_DANPL6.560e-643.14E3 ubiquitin-protein ligase RNF34 n=2 Tax=Danaus p... [more]
A0A2B4RII4_STYPI1.040e-542.11Tumor susceptibility gene 101 protein n=2 Tax=Styl... [more]
F1KY53_ASCSU2.410e-545.24RING finger and SPRY domain-containing protein 1 n... [more]
A0A6A5BJ22_NAEFO3.550e-534.55Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI00077A0D3D3.810e-539.22mitochondrial ubiquitin ligase activator of NFKB 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig872contigL-elsbetiae_contig872:22878..23908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size473
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig872.17747.1prot_L-elsbetiae_contig872.17747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig872 23057..23908 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.0523903-UTR-L-elsbetiae_contig872:22877..230561622816952.0523903-UTR-L-elsbetiae_contig872:22877..23056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 22878..23056 -
1691683936.8033369-UTR-L-elsbetiae_contig872:22877..230561691683936.8033369-UTR-L-elsbetiae_contig872:22877..23056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 22878..23056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.0654294-CDS-L-elsbetiae_contig872:23056..233101622816952.0654294-CDS-L-elsbetiae_contig872:23056..23310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 23057..23310 -
1691683936.816915-CDS-L-elsbetiae_contig872:23056..233101691683936.816915-CDS-L-elsbetiae_contig872:23056..23310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 23057..23310 -
1622816952.076937-CDS-L-elsbetiae_contig872:23868..239081622816952.076937-CDS-L-elsbetiae_contig872:23868..23908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 23869..23908 -
1691683936.8262064-CDS-L-elsbetiae_contig872:23868..239081691683936.8262064-CDS-L-elsbetiae_contig872:23868..23908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 23869..23908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig872.17747.1

>prot_L-elsbetiae_contig872.17747.1 ID=prot_L-elsbetiae_contig872.17747.1|Name=mRNA_L-elsbetiae_contig872.17747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
AGRRRSGARCAGWGRWTRSSCRAGTWVCASPAPGCSPCAPSARPTSTAFS
PCTVPDFPPKARSLASLFSLGFVCACVLALGGLIGWLFFVFRAFRLN*
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mRNA from alignment at L-elsbetiae_contig872:22878..23908-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig872.17747.1 ID=mRNA_L-elsbetiae_contig872.17747.1|Name=mRNA_L-elsbetiae_contig872.17747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-elsbetiae_contig872:22878..23908- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGGAGGAGGAGGAGCGGTGCAAGATGTGCTGGATGGGGTAAGAAGCA
CAGATACGCTTCGTTTGTACGCATGCATGACAGGGGAAAGAGCAAAAGCC
AGTAGCATATTGTAGCGTCCGAGATTTAAACCATCCCGGAGCCTTTGGTC
TTTCAACGACACTTTTTTGAAGAAGAGGTGAAAAAAACGCGCAGAAGCGC
TCGCTCCGATATGGCTTCACCCCAGACCCGTCGCCCCGCTCTCCCGATCT
GCAACTCTACGTAGGCGATAAACCCCTCGCTACATAACAATGTAGACAGA
TGCGCAAACGTTCGCCGTGGTATACAGTCAGTGGAACACAGAGTCGTGCA
ACCTATCCCCCCCCGCATGCACCTGGCGTGTTTCGCACCGCCAGCCCCTC
GTCTCATTGCCTTTCTAAATTTGGCGGCGGCGCAAAAGCCGAACCGCTTC
GCGCGAGGTTGACTGTAAATATATGTAAAATTCGCCTGTTATTTATTGCC
GTGTGTGTGCGTTTGTGTGTGTGTTTTCTTTTCGCTCGTGTGTTATATTT
TACAAGTATATGATTTAATCAAATCAAACCCCAAATGAATAATGTCAGGT
CGCTGGACGCGCTCCTCTTGCCGTGCGGGCACTTGGGTCTGTGCCAGTCC
TGCGCCGGGGTGCTCTCCGTGTGCCCCATCTGCAAGGCCGACATCTACCG
CGTTCAGCCCGTGTACCGTTCCTGATTTTCCTCCGAAGGCTCGCTCGCTG
GCCTCGCTCTTCTCTTTAGGTTTTGTTTGCGCTTGTGTTTTGGCGTTGGG
TGGTTTGATTGGTTGGTTGTTCTTCGTTTTTCGAGCTTTTCGGTTGAATT
GATTTTTGTGTATCCATCCGTCAACAGATGGTTTTTGATTGGGGCGAGGT
GTGCGAGTGTTGTTCCTCTTTTGTCATCGGTCGTGTGCGTGCTCCCCCTG
ATGGAGACCAGGTGTTGAGTAGCCTGGGGTGATGCGGGTACCTTTCATGC
TAAGAGGTGCTCACGGGTATGCCGTCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig872:22878..23908-

>mRNA_L-elsbetiae_contig872.17747.1 ID=mRNA_L-elsbetiae_contig872.17747.1|Name=mRNA_L-elsbetiae_contig872.17747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig872:22878..23908- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGGAGGAGGAGGAGCGGTGCAAGATGTGCTGGATGGGGCCGGGAGGA
GGAGGAGCGGTGCAAGATGTGCTGGATGGGGTCGCTGGACGCGCTCCTCT
TGCCGTGCGGGCACTTGGGTCTGTGCCAGTCCTGCGCCGGGGTGCTCTCC
GTGTGCCCCATCTGCAAGGCCGACATCTACCGCGTTCAGCCCGTGTACCG
TTCCTGATTTTCCTCCGAAGGCTCGCTCGCTGGCCTCGCTCTTCTCTTTA
GGTTTTGTTTGCGCTTGTGTTTTGGCGTTGGGTGGTTTGATTGGTTGGTT
GTTCTTCGTTTTTCGAGCTTTTCGGTTGAATTGAGTCGCTGGACGCGCTC
CTCTTGCCGTGCGGGCACTTGGGTCTGTGCCAGTCCTGCGCCGGGGTGCT
CTCCGTGTGCCCCATCTGCAAGGCCGACATCTACCGCGTTCAGCCCGTGT
ACCGTTCCTGATTTTCCTCCGAAGGCTCGCTCGCTGGCCTCGCTCTTCTC
TTTAGGTTTTGTTTGCGCTTGTGTTTTGGCGTTGGGTGGTTTGATTGGTT
GGTTGTTCTTCGTTTTTCGAGCTTTTCGGTTGAATTGA
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