mRNA_L-elsbetiae_contig8719.17744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8719.17744.1
Unique NamemRNA_L-elsbetiae_contig8719.17744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 597 bits (1539), Expect = 2.220e-186
Identity = 384/484 (79.34%), Postives = 396/484 (81.82%), Query Frame = 1
Query:   49 EIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXX-------SSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGV---RTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXD---------HLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKG---GGMRWPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAA 1434
            EIRHVLGSA  GGADGAPADDPVTSLDMFVGSDYLVAGHGSG+V LWDYL RGVVLKAV D HSSAVVSVRCFVQG     XXXXXXXX       SSDPAAITADVEGVV+KMCFRR+MWTKWVVDTECLLDGAAGPIPA+CVLP+WTD+   + + +        R  AV G  PGF+DLGMMAMSSWKNTFIVGI+PEVKVIHKWPRPPLFS  XXXXXXXXXXXX          HLPPPCLSWGP QPSAARA AP MALLARGWGNSIQILAATR   D GG GGAG     GG RWPGLAVVKELSASAPVVAVEWLREQVLAYLD DMELCVLDTRAGTELEHASLSTL VS+SPILPXXXXXXXXXXXXXXXXXXXXXX                XXXXXXX       G YHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAA
Sbjct:  442 EIRHVLGSAAGGGADGAPADDPVTSLDMFVGSDYLVAGHGSGRVLLWDYL-RGVVLKAVVDVHSSAVVSVRCFVQGGSGGGXXXXXXXXXXXXLAGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASPSPSLSSXXXXXXRRGVAVGGPGPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXXXXXXXGHLPPPCLSWGPSQPSAARAQAPPMALLARGWGNSIQILAATRV--DAGGRGGAGXXXXRGGARWPGLAVVKELSASAPVVAVEWLREQVLAYLDTDMELCVLDTRAGTELEHASLSTLSVSISPILPXXXXXXXXXXXXXXXXXXXXXXGTQAAGTRSGPAESTLXXXXXXXP------GTYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAA 916          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 3.210e-130
Identity = 257/331 (77.64%), Postives = 270/331 (81.57%), Query Frame = 1
Query:   19 RFVVFLFP-LQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXX---------SSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGG---VRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKG---GGMRWPGLAVVKELSASAPVVAVEWLREQ 963
            R ++ LF   QEIRHVLGSA  GGADGAPADDPVTSLDMFVGSDYLVAGHGSG+V LWDYL RGVVLKAV D HSSAVVSVRCFVQG   XXXXXXXXXX         SSDPAAITADVEGVV+KMCFRR+MWTKWVVDTECLLDGAAGPIPA+CVLP+WTD+  S            +R GAV G +PGF+DLGMMAMSSWKNTFIVGI+PEVKVIHKWPRPPLF+  XXXXXXXX     H PPPCLSWGPPQPSAARA AP MALLARGWGNSIQILAATR   D GG GGAG     GG RWPGLAVVKELSASAPVVAVEWLREQ
Sbjct:  452 RGLILLFDHFQEIRHVLGSAAGGGADGAPADDPVTSLDMFVGSDYLVAGHGSGRVLLWDYL-RGVVLKAVVDVHSSAVVSVRCFVQGGGGXXXXXXXXXXXXXXXXXXXSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFTGXXXXXXXXXG----HFPPPCLSWGPPQPSAARAQAPPMALLARGWGNSIQILAATRV--DAGGRGGAGXXXXRGGARWPGLAVVKELSASAPVVAVEWLREQ 775          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: K3X190_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X190_GLOUD)

HSP 1 Score: 190 bits (482), Expect = 9.640e-48
Identity = 150/470 (31.91%), Postives = 220/470 (46.81%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENAA 1431
            V+     Q IR VLG+      DGA     +T++D+  GSDYLV G  SG++ LWD + +G  LKAV+DAH + VVS+R F++                    ++ D  G+VNK+ F +MM   +VVD + L DG+AG I ++ VLP                      +  L+  +    + A+SS K TFI+ I PEVKV+++W RP   S                LP    +W    P ++RA AP   +L+RGWGN +Q L         GG   +    G  WP      ++  S  ++A++WL +QV+ YL+++ E+CV D  +  ELE   +S+L +  +                                                          + N+FR C+  LYLLG +EL+  RVQ W+QR+++LV  GEWLEALA+ALDH+E  KI  A+ AA
Sbjct:  246 VIIFDHFQNIRQVLGNTSDAETDGA-----ITAIDVSPGSDYLVCGFQSGRIVLWDMI-KGTPLKAVSDAHENPVVSLR-FLK--------------DQKAVLVSVDNNGIVNKLNFSKMMGMVYVVDVDPLYDGSAGKILSISVLPQ---------------SAGNAKISHLTDQYC---LAALSSEKVTFIIAIEPEVKVLYRWARPDDISPEDPV-----------LPSLAFAWIS-FPGSSRALAP---VLSRGWGNHVQFLEVVF----PGGQNHSHSRHG--WPTFEEHDQIECSNDLMAIQWLGDQVVVYLNSNDEICVYDVMSRQELEIVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVDEGEWLEALALALDHYEGLKIAAADRAA 606          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 194 bits (492), Expect = 9.970e-48
Identity = 155/472 (32.84%), Postives = 223/472 (47.25%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGLAVVKE---LSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENA 1428
            V+     Q IR VLG+     +DG     P+T++D+  GSDYLV G+ SG++ LWD + +G  LKAV+DAH + VVS+R F++                 P  ++ D  G+VNK+ F +MM   +VVD + L DG+AG I ++ VLP           +AG   +       L+  +    + A+SS K TFI+ I PEV+V+++W RP   +A               LP    +W    P ++RA AP   +LARGWGN +Q L               GKG      G     E   +  S+ V+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                          + N+FR C   LYLLG +EL+  RVQ W+QR++SLV  GEWLEALA+ALDH+E  KI  A+ A
Sbjct:  525 VIIFDHFQNIRQVLGNTTDADSDG-----PITAVDVSPGSDYLVCGYQSGRIVLWDMI-KGTSLKAVSDAHENPVVSLR-FLK--------------DQKPVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDGSAGKILSISVLPQ----------SAGNAKIAY-----LTDQYC---LAALSSEKVTFIIAIEPEVRVLYRWTRPDDIAADDPV-----------LPSLAFAWIS-FPGSSRALAP---VLARGWGNRVQFLEVVFP---------GGKGHTHARHGFPTFDEHDQIECSSDVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEMVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGCYNILYLLGLKELQTARVQPWTQRIDSLVDEGEWLEALALALDHYEGLKIAAADRA 884          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 191 bits (486), Expect = 5.300e-47
Identity = 145/462 (31.39%), Postives = 220/462 (47.62%), Query Frame = 1
Query:   46 QEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENA 1428
            Q IR VLG+     +DGA     +T++D+  GSDYLV G+ SG++ LWD + +G  LKAV+DAH + VVS+R F++                 P  ++ D  G+VNK+ F +MM   +VVD + + DG+AG I ++ +LP                      +  L+  +    + A+SS K TFI+ I PEVK++H+W RP    A               LP    +W    P ++RA AP   +LARGWG  +Q L         GG   +    G  WP      ++ +S+  +A++WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                          + N+FR C+  LYLLG +EL+  RVQ W+QR+++LV+ G+WLEALA+ALDH+E  K+  A+ A
Sbjct:  244 QNIRQVLGNTNDSDSDGA-----ITAIDVSPGSDYLVCGYQSGRIVLWDMI-KGTSLKAVSDAHENPVVSLR-FLK--------------DQKPVLMSVDTNGIVNKVNFSKMMGMVYVVDVDPIYDGSAGRILSLSILPQ---------------SAGNAKISHLTDQYC---LAALSSEKVTFIIAIEPEVKILHRWMRPEEIGADDPV-----------LPSLAFAWIS-FPGSSRALAP---VLARGWGKHVQFLEVVF----PGGQNHSHSKHG--WPTFEEHDQIESSSDTMAIQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVEEGQWLEALALALDHYEGLKVAAADRA 596          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A3F2RY97_9STRA (Vps8 domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RY97_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.270e-46
Identity = 153/471 (32.48%), Postives = 223/471 (47.35%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMR-WPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENAA 1431
            V+     Q IR VLG+     +DG     PVT++D+  GSDYLV G+ SG++ LWD + +G  LKAV+DAH + VVS+R F++                 P  ++ D  G+VNK+ F +MM   +VVD + L DG+AG I ++ VLP           +AG   +       L+  +    + A+SS K TFI+ I PEV+V+++W RP   +                LP    +W    P ++RA AP   +LARGWGN +Q L            GG     G   +P      ++ +S+ V+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                          + N+FR C   LYLLG +EL+  RV  W+QR++ LV  GEWLEALA+ALDHFE  K+  A+ AA
Sbjct:  216 VIIFDHFQNIRQVLGNTNDADSDG-----PVTAVDVSPGSDYLVCGYQSGRIVLWDMI-KGTSLKAVSDAHENPVVSLR-FLK--------------DQKPVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDGSAGKILSISVLPQ----------SAGNAKISY-----LTDQYC---LAALSSEKVTFIIAIEPEVRVLYRWARPDDIAPDDPV-----------LPSLAFAWIS-FPGSSRALAP---VLARGWGNRVQFLEVVF-------PGGKNHSHGRHGFPTFDEHDQIESSSAVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGCYNILYLLGLKELQTARVLPWTQRIDLLVDDGEWLEALALALDHFEGLKVAAADRAA 576          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: F0VYQ3_9STRA (Vacuolar protein sortingassociated protein 8 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYQ3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.270e-46
Identity = 148/459 (32.24%), Postives = 217/459 (47.28%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFE 1401
            V+     Q IR VLG+     ADG     PVT++D+  GSD+LV G+ SG++ LWD + +G  LKA A+AH S VVS+  F++                 P  ++ D EG+VN++ F +MM   +VVDT+ + DG+ G I A C+LP                    G  K +S       ++A+S+ K TFIV + P+VKVI++W RP   +                LP    SW    P +AR  AP   +LAR WG  +Q L        TGG   +    G  WP       + ++  V+A++WL EQ++AYL+A  E+CV D  +  ELE   +++L +  +                                                          + N+FRAC+  LYLLG QEL++ RVQ W+QR+++L+  GEW+EALA+ALD+FE
Sbjct:  295 VIIFDHFQNIRQVLGNTVDQKADG-----PVTAIDVSHGSDFLVCGYQSGRIVLWDMI-KGSSLKADAEAHESPVVSLH-FLK--------------DQKPILLSVDSEGIVNRVNFNKMMGMVYVVDTDPIYDGSVGKILATCILPQ----------------SAPGQAK-ISTIMEQYSLVALSNEKVTFIVALEPDVKVIYRWARPADVTDEDPV-----------LPSLAFSWVA-FPGSARWVAP---ILARAWGKHVQFLELVF----TGGPNHSHSRHG--WPAFEEHTPVESTQDVMAIQWLGEQIVAYLNAKDEICVYDVLSRQELEIVDVTSLDLVFASY-------------------------------------------------RGKNARSFSNSFRACDNGLYLLGLQELKSARVQPWTQRIDTLIDQGEWMEALALALDNFE 645          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A024G3A1_9STRA (Vps8 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3A1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 9.670e-46
Identity = 149/459 (32.46%), Postives = 214/459 (46.62%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFE 1401
            V+     Q IR VLG+     ADG     PVT++D+  GSD+LV G+ SG++ LWD + +G  LKA A+AH S VVS+  FV+                 P  ++ D EG+VN++ F ++M   +VVDT+ + DG+ G I A C+LP                    G  K +S       ++A+S+ K TFIV + P VKVI +WPRP   S                LP    SW    P + R  AP   +LAR WG  +Q L        TGG   +    G  WP       +  +  V+A++WL EQ++AYL+A  E+CV D  +  ELE   +++L +  +                                                          + N+FRAC+  LYLLG QEL++ RVQ W+QR+++L+  GEW+EALA+ALD+FE
Sbjct:  286 VIIFDHFQNIRQVLGNTVDQKADG-----PVTAIDVSHGSDFLVCGYQSGRIVLWDMI-KGSSLKADAEAHESPVVSLH-FVK--------------DQKPILLSVDSEGIVNRVNFNKVMGMVYVVDTDPIYDGSVGKILATCILPQ----------------SAPGQAK-ISNVMEQYSIVALSNEKVTFIVALEPVVKVIFRWPRPADVSDEDPV-----------LPSLAFSWVA-FPGSTRWVAP---ILARAWGKHVQFLELIL----TGGPNHSHSRHG--WPTFEEHAPVENAQDVMAIQWLGEQIVAYLNAKDEICVYDVLSRQELEIVDVASLDLVFASY-------------------------------------------------RGKNARSFSNSFRACDNGLYLLGLQELKSARVQPWTQRIDTLIDQGEWMEALALALDNFE 636          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: H3GT40_PHYRM (Vps8 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT40_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 2.590e-45
Identity = 152/471 (32.27%), Postives = 221/471 (46.92%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMR-WPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENAA 1431
            V+     Q IR VLG+      DG     PVT++D+  GSDYLV G+ SG++ LWD + +G  LKAV+DAH + VVS+R F++                 P  ++ D  G+VNK+ F +MM   +VVD + L DG+AG I ++ VLP           +AG   +       L+  +    + A+S+   TFI+ I PEV+VI++W RP   +                LP    +W    P ++RA AP   +LARGWGN +Q L            GG     G   +P      ++ +S+ V+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                          + N+FR C   LYLLG +EL+  RV  W+QR++ LV  GEWLEALA+ALDH+E  KI  A+ AA
Sbjct:  216 VIIFDHFQNIRQVLGNTNDADGDG-----PVTAVDVSPGSDYLVCGYQSGRIVLWDMI-KGTSLKAVSDAHENPVVSLR-FLK--------------DQKPVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDGSAGKILSISVLPQ----------SAGNAKISY-----LTDQYC---LAALSTETVTFIIAIEPEVRVIYRWARPDDIAPDDPV-----------LPSLAFAWIS-FPGSSRALAP---VLARGWGNRVQFLEVVF-------PGGKNHSHGRHGFPTFDEHDQIESSSAVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGCYNILYLLGLKELQTARVLPWTQRIDLLVDDGEWLEALALALDHYEGLKIAAADRAA 576          
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Match: A0A5D6XX63_9STRA (Vps8 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX63_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.100e-45
Identity = 145/476 (30.46%), Postives = 216/476 (45.38%), Query Frame = 1
Query:   25 VVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDYLVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGXXXXXXXXXXXXXSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPAVCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTFIVGIYPEVKVIHKWPRPPLFSAGXXXXXXXXXXXXDHLPPPCLSWGPPQPSAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMR------WPGLAVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLSTLGVSVSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQ-KILPAENAA 1431
            V+     Q IR VLG+      DG     P+T++D+  GSDYLV G  SG++ LWD + +G  LKAV+DAH + VVS+R F++                    ++ D  G+VNK+ F +MM   +VVD + + DG+AG I ++ VLP                      +  L+  +    + A+SS K TF++ I PEVKV+++W RP   +                LP    +W    P ++RA AP   +LARGWG+ +Q L                 GG         WP      +L  +  ++A++WL +QV+ YL+A  E+CV D  +  ELE   +S+L +  +                                                          + N+FR  +  LYLLG +EL+  RVQ W+QR+++LV  GEWLEALA+ALDH+E  K+  A+ AA
Sbjct:  256 VIIFDHFQNIRQVLGNTSDAETDG-----PITAIDVSPGSDYLVCGFQSGRIVLWDMI-KGTSLKAVSDAHENPVVSLR-FLK--------------DQKAVLVSVDTNGIVNKLTFSKMMGMMYVVDVDPIYDGSAGKILSISVLPQ---------------SAGNAKISHLTDQYC---LAALSSEKVTFVIAIEPEVKVLYRWARPDDIAVDDPV-----------LPSLAFAWIS-FPGSSRALAP---VLARGWGSYVQFLEVVF------------PGGPPHMHARHGWPTFEEHDQLECATDIMAIQWLGDQVVVYLNASDEICVYDVMSRQELEVVDVSSLELVFASY-------------------------------------------------RGKNARSFSNSFRGGDNILYLLGLKELQTARVQPWTQRIDTLVDEGEWLEALALALDHYEGLKVAAADRAA 616          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8719.17744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE2.220e-18679.34Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI3.210e-13077.64Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
K3X190_GLOUD9.640e-4831.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WX84_9STRA9.970e-4832.84Chromo domain-containing protein n=2 Tax=Nothophyt... [more]
A0A8K1FDH6_PYTOL5.300e-4731.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RY97_9STRA1.270e-4632.48Vps8 domain-containing protein n=22 Tax=Peronospor... [more]
F0VYQ3_9STRA1.270e-4632.24Vacuolar protein sortingassociated protein 8 putat... [more]
A0A024G3A1_9STRA9.670e-4632.46Vps8 domain-containing protein n=1 Tax=Albugo cand... [more]
H3GT40_PHYRM2.590e-4532.27Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A5D6XX63_9STRA3.100e-4530.46Vps8 domain-containing protein n=1 Tax=Pythium bra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8719contigL-elsbetiae_contig8719:104..7181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.4
Seed ortholog evalue8.1e-121
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons8
Model size2203
Cds size2202
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8719.17744.1prot_L-elsbetiae_contig8719.17744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8719 104..7181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.9425504-CDS-L-elsbetiae_contig8719:103..2671622816951.9425504-CDS-L-elsbetiae_contig8719:103..267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 104..267 -
1691683936.6884131-CDS-L-elsbetiae_contig8719:103..2671691683936.6884131-CDS-L-elsbetiae_contig8719:103..267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 104..267 -
1622816951.9544322-CDS-L-elsbetiae_contig8719:1173..12671622816951.9544322-CDS-L-elsbetiae_contig8719:1173..1267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 1174..1267 -
1691683936.7051187-CDS-L-elsbetiae_contig8719:1173..12671691683936.7051187-CDS-L-elsbetiae_contig8719:1173..1267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 1174..1267 -
1622816951.9662864-CDS-L-elsbetiae_contig8719:2031..23531622816951.9662864-CDS-L-elsbetiae_contig8719:2031..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 2032..2353 -
1691683936.719131-CDS-L-elsbetiae_contig8719:2031..23531691683936.719131-CDS-L-elsbetiae_contig8719:2031..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 2032..2353 -
1622816951.9757848-CDS-L-elsbetiae_contig8719:2403..30621622816951.9757848-CDS-L-elsbetiae_contig8719:2403..3062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 2404..3062 -
1691683936.7330601-CDS-L-elsbetiae_contig8719:2403..30621691683936.7330601-CDS-L-elsbetiae_contig8719:2403..3062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 2404..3062 -
1622816951.9873917-CDS-L-elsbetiae_contig8719:4011..43531622816951.9873917-CDS-L-elsbetiae_contig8719:4011..4353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 4012..4353 -
1691683936.7471578-CDS-L-elsbetiae_contig8719:4011..43531691683936.7471578-CDS-L-elsbetiae_contig8719:4011..4353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 4012..4353 -
1622816951.997032-CDS-L-elsbetiae_contig8719:4869..50631622816951.997032-CDS-L-elsbetiae_contig8719:4869..5063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 4870..5063 -
1691683936.7614784-CDS-L-elsbetiae_contig8719:4869..50631691683936.7614784-CDS-L-elsbetiae_contig8719:4869..5063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 4870..5063 -
1622816952.0085368-CDS-L-elsbetiae_contig8719:5945..61721622816952.0085368-CDS-L-elsbetiae_contig8719:5945..6172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 5946..6172 -
1691683936.7711172-CDS-L-elsbetiae_contig8719:5945..61721691683936.7711172-CDS-L-elsbetiae_contig8719:5945..6172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 5946..6172 -
1622816952.0197365-CDS-L-elsbetiae_contig8719:6981..71811622816952.0197365-CDS-L-elsbetiae_contig8719:6981..7181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 6982..7181 -
1691683936.782904-CDS-L-elsbetiae_contig8719:6981..71811691683936.782904-CDS-L-elsbetiae_contig8719:6981..7181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8719 6982..7181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8719.17744.1

>prot_L-elsbetiae_contig8719.17744.1 ID=prot_L-elsbetiae_contig8719.17744.1|Name=mRNA_L-elsbetiae_contig8719.17744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=734bp
MGLFLVRFVVFLFPLQEIRHVLGSAGRGGADGAPADDPVTSLDMFVGSDY
LVAGHGSGQVFLWDYLSRGVVLKAVADAHSSAVVSVRCFVQGGGGGGGGG
SSSAGSSDPAAITADVEGVVNKMCFRRMMWTKWVVDTECLLDGAAGPIPA
VCVLPSWTDAGGSAATTAGGGGVRTGAVKGLSPGFFDLGMMAMSSWKNTF
IVGIYPEVKVIHKWPRPPLFSAGGGSAAAAAAAAADHLPPPCLSWGPPQP
SAARAGAPSMALLARGWGNSIQILAATRATADTGGSGGAGKGGGMRWPGL
AVVKELSASAPVVAVEWLREQVLAYLDADMELCVLDTRAGTELEHASLST
LGVSVSPILPPPPSSSSSLAPPPPPPGAQSPLPGGSSGASSSGASGDAVS
SPTLPPPPPPPLGPYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLV
QAGEWLEALAVALDHFEQKILPAENAAAAAAAAAAAAAAAAAAAAAEGTM
GADGSGGASAHGSDGGYSGAGGFGAGSRHGSSSGDPWGGGASAAAQTAAA
AAAEVGGGRAHQRSPRAVSPAGDQQRARRGVALGVGGGGGGGGGNGLVGG
WGEGADQPGAQPLSDAGRGVRGVLRRYGEAGHAVRAYLPRVPGTWATGGV
LGHAGAVRAHGQAQDAVARGRGGLHRQVSERRRHDRRRAARAPARSPVAG
PRHRAPAAPQTPAALGAPGGAGVQRRLRVFGGGG
back to top

mRNA from alignment at L-elsbetiae_contig8719:104..7181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8719.17744.1 ID=mRNA_L-elsbetiae_contig8719.17744.1|Name=mRNA_L-elsbetiae_contig8719.17744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7078bp|location=Sequence derived from alignment at L-elsbetiae_contig8719:104..7181- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCTGTTTTTGGTTCGTTTTGTCGTTTTCCTTTTTCCGCTACAGGA GATTCGCCACGTGCTCGGGAGCGCCGGGAGGGGCGGCGCAGACGGAGCCC CCGCAGACGACCCGGTGACGTCACTGGACATGTTTGTCGGGAGTGACTAC CTCGTGGCTGGCCACGGGAGCGGCCAAGTCTTTCTGTGGGATTATCTCAG GTACGGCGAATCGACAGGGTCAGTGATGGATTAGTACGGACTCATGAAGG TGTACGGGATAGAGAGATCGGAACGGTTTTTCATGTCAAGACAACACACA CACACACGGCGGTGTGGTTTGAGGGAAAATAAACTTCCAAATTTTGATTA GGAGGGGGGCGGAGAGGTAGGGGCAAGGGCACGCACGCGTTCGACGATGA TTGGGTGCTGTTTGTGGGCCTTTTGTTTTCGTCGAGCTCCTCGGCAGAGC GATCGCTTTTGCCACGCGTACATCCGTACGCACGTGCCCTATTTCATCGC GGAATCCCCTTCCCACCTCCCCCCCCTTGCCACGCCTCCAGCGAGGGAAC CAGCGAAACCCCGACATTAGTGTTCCTGCTCCATACCGGCTTCGAACTGT ATTCTCCGGCCAAGCTTTTTTGTCGCCGAGAAAATGCAAATTGTGGATTA GCGCACCAAACATTTCGGTGCTGGTGGTGCCTCGACCGGGAAGTAGAGTA GGCACGTGCCAAATGAGGATTGATCGACGTCCAGTCATAACTAAGGACGT TCAGTCAAGCGCACGCTAAGTATGCTGTTGTTGTTGTTGTTGTTGTTTCT CACATTAGCTCTCTAAATAGCCCACAAACATCAATGGGGGCCCGTGGTCA CAAAAACAGGGCACACTCGACGCCGCCGGAAGAAAAATTATGTGTGTACG CCCCGTTCTTCGCCACATTGTCCCAATCCCGACCCCCCCCCCCCTCTCCC CCCGTCCTCTCCTTCCTTCTTTCTTGCCCCTGTGTGGCCGCGATCTGTCG TTCGTTGAGCAGGGGTGTGGTCCTGAAGGCTGTGGCTGACGCCCACTCCT CCGCGGTCGTTTCAGTCAGGTGCTTCGTGCAGGGGGGAGGGGGCGGCGGC GGCGGTGGCAGCAGCTCGGCGGGGAGCTCTGACCCCGCCGCCATCACGGC AGACGTGGAAGGGGTGGTGAACAAGATGTGCTTCCGCAGGATGATGTGGA CGAAGTGGGTCGTGGACACGGAGTGCCTGCTGGACGGTGAGTTCCGAGCC GAATTCCTGGAAATTCTAGGCGGGGAGACGGACAAACAAACACACACGAG GGGGGGGAGAGAGAGGGGGGGGGAGGGGGAGGGAGATCGTGATGGAGGGG GTGGCGGAGAGATCAGGAGGAGATAGTATATGTCCCGGGGTGGGAAGGAA GGCAATCGAGGAAGAGGAGTCACCTTCGACATGGTTACACGCTGCCGGAG TGGCATTGTTTGTGCTACTCCGTGCTTGCTGCGCAGGGAAAGCGGCCGCA GTGCTTGCAAGGTTCATCCGGGAGTGCTGAACCCTGCTCGCGATAAAAAA AAACCCTAGGCTGGCACCGCAGGAGGGGGTCCAACCCCCCCCTCCTATGT GACCCCGGTTGGGTCGTCTAGCTAGAGTAGAAGTGGAGGATGGGGGCCAG AGGGGCAGACGACAAAATCCAATAATGGGCAGACAAAAAAAAAAAAAAAT GTAACTCAACCCTTGGCCAGACGCAAACGACAACAGGGGAGTAGACCTAC ATACCGTAGGTAACATAAGATACCACACCCCCCTGGACAGATTTTCAAAG CTCGATTCCTCCCCAGCAAGAAGAGTCTCAGTGCCGAAAGGGCTGGCGTT GGGAGGATCTAGTCGAGAGTTGTCCGAAAGTGTGTTATTTGGTGCTGAGA CCCTCTTCGTTACGGGGTATTGGAGCTCTAAAATTGGATCCAGGGGGTCT GGTATCTTGTGTCACCTACGGTAGTTGGCTGATGCTCACGCCCTCCGCCC CCCCCCCCCCCCTCTCCCAAAAAATAAGCTCCCGATAGCGTTGGTTGCAC GGCGCCATCCCCAGTCTCTCTCGTTCTCGTATCCTCCCTCCGCTGCTGAT CTCTGCGCGTGATTGCAGGCGCGGCCGGCCCCATCCCTGCGGTCTGCGTT TTGCCGAGCTGGACAGACGCCGGGGGCTCCGCCGCTACTACGGCTGGAGG GGGGGGTGTTCGGACCGGGGCGGTCAAAGGATTGTCCCCGGGTTTCTTTG ACCTGGGCATGATGGCCATGAGCTCGTGGAAGAACACCTTCATTGTTGGT ATCTACCCCGAGGTGCGGAAAAAAAAATACCCTCCCCCCGGTGTATGTAT GTACTCTACTGCTGTGCGGTTGTTTTGGCTTTGTTTTTGAAGAAATTTCA TTTCACAGGCGTGACGCCCACGTATACAATACTCCCCCCGGTGTATGTAT GTACTCTACTGCTGTGCGGTTGTTTTGGCTTTGTTTTTGAAGAAATTTCA TTTCACAGTGTGACGCCCACGTATACAATACGTTTCGGGGGGTACGCGGA TAATTTTCACCTCTCGATGAAGCGCCGTTAGCGTCGTTGGCCTTGTTTGA CCTCATGCCGTAGGCATCAAAGTCTTGTTGGTGCTCTCCTGTGTGTACCC GCGCAACCGGAACCGGAACTTACACTTGCTGTCACCCCCATGCGTCGCGC TTTTGTGCCCCTTCCATGCAAAATAATGACCCCCCCCCCCTCCTCATCTC CTCTCCCCTTCCCACCCACCCACCCACCCACCCCGCCCCGCCCCGCCTCG CCCTCCGGAAACCAAAACCCGTACACAGGTCAAGGTGATCCACAAGTGGC CGCGCCCGCCACTGTTTTCTGCGGGGGGCGGGTCGGCGGCAGCAGCGGCG GCGGCAGCAGCGGATCACCTCCCTCCACCGTGTCTCTCGTGGGGACCGCC CCAGCCCTCGGCGGCGCGCGCGGGGGCCCCGTCGATGGCGCTGCTGGCGA GGGGGTGGGGGAACTCCATCCAGATTCTCGCCGCGACGCGCGCCACGGCC GACACGGGCGGGAGTGGGGGAGCGGGAAAGGGCGGCGGGATGAGATGGCC CGGTCTTGCGGTCGTGAAAGAGCTCAGCGCGAGCGCCCCGGTGGTGGCGG TGGAGTGGCTCCGCGAGCAGGTCTGGGTTCGGAGAAGGGAGAAAAGAGTG GCCTGTTCTATCCTCACTACTGCTCATGATTTATTTATTTTCTTTTTTGG TGGCCGTCCTTTCTCGCTCTCTCGGTCTCCCCCCCCCCCCCCCCCCCCCC TTCTCTCTTCTCTCTCCTTTTCCCTCTTTTTTTTTTTCCCTTCTCTTCTT TCTTTTNNNNNNNNNNTTTTCTCCCCCTCCCTTCTCTCTTTTTTTTTTTT TTTTTTTTTTGGGGCCCCCCCCTCTCCCTCTCCCCGTCCCCCCCCCCCCC CCCCCCTCTCTCTCTTCTCTGTCTCTGTCTCTGTCCCTGTCTGTTTGCCT TCCTCTCTATGTCTCTCTGTGTCTCTCTCTCTCCCTCTGTCTGTCTCTCC CTCTCTCTTTCTCTTTATCTCGATCCCTCTCTTGCTTCGAGCGTGTATCA ACAGCATACACCGCCTTATGGCTTTGTTGAAATAACTATACCTACGCTTG TGCTCTTTTGCCCGCTTGTTGTGCCTCTGCTATAATTTCTGGTGGTGCTG ATTGTACTACTTGGGGGTATTCGTGGGAGTTGGATGTCGATGGCGTGGTT TGGTGGACGGGAACAGGGTGTGTTTGTGTTTCGAGGTACATATGTATGCA ACTCATATGTAACTTAGTCTCCCTCTTATCGTGGTGCGTCGTGGAATCGG TGACGGCATTTTCTTCAGTGCGTGCCAAAGCATATCCTGGTGACCCTTCA ATCGTGGCCCTACAGCAGCAGTAGTGCCACCGATAACATCTCATTCGTGT TTATTCTTTTTTTGTATGCCTTCCTTTGTTCGCCTTGCCCCCTCTCCCAT TCCCCCCCGCCACAGCAGTCGACACGGCGTTTCCCTGCCACCCTCAACTC AGCTCTTTTTTTCTCTGCCTCCCTGCTCTGAGTTCTGGATTTTTTTTTCC GTGTTCCTCTTCTTCCCAGGTCCTGGCATACCTGGACGCGGACATGGAGC TGTGCGTGCTGGACACGCGCGCCGGCACCGAGCTGGAGCACGCCAGCCTG TCCACCCTCGGGGTGTCCGTCTCGCCGATCTTACCGCCGCCGCCTTCCTC CTCCTCTTCTCTGGCTCCGCCGCCGCCGCCGCCGGGGGCACAGTCGCCTC TTCCGGGCGGCAGTAGCGGAGCGTCGTCGTCCGGTGCAAGCGGCGATGCT GTGTCCTCGCCGACGCTTCCCCCCCCCCCCCCTCCTCCCCTGGGCCCCTA CCACAACGCGTTCCGCGCGTGCGAGGGCCGGCTTTACCTCCTCGGGAGGC AGGAGCTGAGGGCGGTGAGAGTGCAGGGGTGGTCCCAGCGGGTGGAGTCT CTCGTGCAGGCCGGGGAGTGGCTCGAGGCCCTCGCCGTGGCGCTCGATCA CTTCGAGCAGAAGATCCTGCCGGCGGAGAACGCCGCCGCCGCCGCCGCCG CCGCCGCCGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGAGGGA ACGATGGGTGCCGACGGAAGCGGCGGAGCGTCTGCTCACGGCAGTGACGG GGGTTATTCCGGCGCTGGAGGTTTTGGCGCGGGCTCGCGTCACGGCAGCA GCAGCGGCGACCCTTGGGGAGGCGGCGCGTGGAGAGGCGGCGCGGCGATG ACGGCGGCGGCGGCGGGATCGGGAAGAGGTCGGCAGCAGCGCAGACCGCT GCCGCCGCCGCCGCCGAGGTCGGAGGCGGCCGAGCACATCAGCGATCTCC TCGCGCAGTATCTCCGGCTGGCGATCAACAACGCGCCCGCCGCGGAGTCG CCCTCGGCGTTGGCGGCGGCGGCGGGGGGGGCGGGGGCAATGGGCTCGTC GGGGGCTGGGGGGAGGGCGCGGATCAACCTGGCGCACAGCCACTTTCAGA TGCTGGCCGGGGTGTGCGCGGAGTTCTGCGCCGTTACGGGGAGGCTGGAC ATGCTGTTCGGGCCTATCTTCCACGCGTTCCGGGCACGTGGGCAACAGGG GTGGGTGTGGGTGGGGTGGGTGGGTGGATGTGTGGTTGTTGTAGGTGTGT TGCTGCTTTTTTTCGAGCAGAAGTGCTATTATATTTCTCGTGTGTCTGGC TTTTGCTTCTCGGCGTTGTGATCTATGGCACGACCGATGTGTTATTTTGG CTTTTGTGTGCGTGCTTACGTGTATCGTGTGTGTGTGTGTGTGTGGTAGG TGGAAGCAAACGATACGAAGGTCGATTATAATATATCAGCAACATTTGAA TTTGGGAATTTTATTTCATTTTGAATTTGTTTTATTTTGTTTTATTTTAT TTTCATCACGTTTTCTTCCAGCGCTCGAAGGACTGTTTGCCACGAGGGGA CGCATCTTGCGAGAGCTTCAAACCGCAGTCGCACAGAAGGGTTCCCCTCC CTGAGGCCCCCACTTCCCCCTCCCTCCTGCGGTACTTGCCTTCGTTTTTT TGAACGCGAGAAGAGTTTCGGCCGTCTCTTCCCTCAAAATGTGTACACAC GCGCTACAAGAGCGTTTTCCGCTGACAGGAACGAAAGCGAGAGCAAAATA ACTCATTTTTGTGAGAAAACGTCGCCGCTGCCGGGGCTCGGACCCACAAC CTGCCTGCCTGCTGGAAGGTTCCGATGATATTTACCAACTAGACCACCGG GGCGACCGCGGATATCTATGGAGCGACCAAACCAACAGCAGCGGCAAACG ACGCCGAGCTGCCAAGACAGCCGTTTTATAACGGGCGTTCTCTTTTTGTT TTTGCGCGGCACAGGGTGTTCTTGGACACGCTGGAGCCGTACGTGCTCAT GGCCAAGCTCAAGACGCTGTCGCCCGAGGTCGTGGCGGCCTTCATCGACA GGTGTCAGGTGCGTCAAATCGTCGCCTTCGCGTTGTGGGGAAAGGCCATC ATCGATGGTGGTGCTGCTGCTGTCGATGAGGCAACCACAGAAGGAAAACA GAGAGTCCGGAGGCGGAGGGGTCGATGGCGAGGAGGCGAGGGGAGAGGGG GGGGGGCGCATGCCCTCTGCGTGACCCCCACCCGCGCTTTATAACTGCTG TATGGTCGTTGTTTAGCGACGTTTGGTGTGTACTTGTGTGTATGTACATA GTGGCTGAAGGAAGGATGTGAACAGGTAAGACTGGCGTGAATAGAGGATG GCCCGAACGAAAAACAAAAAATGGGGATGTAGATTCGATGCGGATGCCTC AATGGTGGGTGTTGATGATTGATGTTCCCTCTCTCTCTCTCTCTCTGCCT CCGGAGCCCGTCGATCCTTGCCTCGTGTGCCTCTCTCGCTCCAGCGCTTC GTATAAATTGCGGTTTTTCCTCTTCTGCTGCCACACGGCGCTGCTCCCGG AAACCAAAACGGGGGTCCGCTGTCGTCGTTGGCGGTGGTGATGGTGGTGA TGGTTTCGTCTTCCGTGCTTGATGGAGACAATCGACCGCGGCAATACGGT TTGCTCCTCGCCTGCGTTGCGGCTGCGGTGATTGTGACGGTGGTGATATG TTGATATGGTGATGATGATCGTGATGCTGATGGTGACGGCAATGGTGCCG GTATGTATTGGTAAAATGGCAATGGTGGTCCCGGTGATGATGATGTTGAT GCTGATGCTGATGCTGATGCTGATGCTGAAGGTAATGGTGACGGTAATGG TAAAATGGCGATAGTGACGGTGGCGGTGACGGTGGTGTTTCTTCTCCGTC ACGATGAACTGAACGCGAACTGCAAACCTGCCGCGGCCTCCGTGTCCGTC CATCCGTCCGACAGAGCGGCGGCGACATGATCGCCGCCGAGCGGCTCGTG CTCCGGCTCGATCCCCGGTCGCTGGACCTCGCCACCGCGCTCCCGCTGCT CCGCAGACACCGGCTGCACTCGGCGCTCCTGGCGGTGCGGGCGTCCAGAG GCGACTACGTGTCTTCGGTGGAGGAGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8719:104..7181-

>mRNA_L-elsbetiae_contig8719.17744.1 ID=mRNA_L-elsbetiae_contig8719.17744.1|Name=mRNA_L-elsbetiae_contig8719.17744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4404bp|location=Sequence derived from alignment at L-elsbetiae_contig8719:104..7181- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCTGTTTTTGGTTCGTTTTGTCGTTTTCCTTTTTCCGCTACAGGA
GATTCGCCACGTGCTCGGGAGCGCCGGGAGGGGCGGCGCAGACGGAGCCC
CCGCAGACGACCCGGTGACGTCACTGGACATGTTTGTCGGGAGTGACTAC
CTCGTGGCTGGCCACGGGAGCGGCCAAGTCTTTCTGTGGGATTATCTCAG
ATGGGTCTGTTTTTGGTTCGTTTTGTCGTTTTCCTTTTTCCGCTACAGGA
GATTCGCCACGTGCTCGGGAGCGCCGGGAGGGGCGGCGCAGACGGAGCCC
CCGCAGACGACCCGGTGACGTCACTGGACATGTTTGTCGGGAGTGACTAC
CTCGTGGCTGGCCACGGGAGCGGCCAAGTCTTTCTGTGGGATTATCTCAG
CAGGGGTGTGGTCCTGAAGGCTGTGGCTGACGCCCACTCCTCCGCGGTCG
TTTCAGTCAGGTGCTTCGTGCAGGGGGGAGGGGGCGGCGGCGGCGGTGGC
AGCAGCTCGGCGGGGAGCTCTGACCCCGCCGCCATCACGGCAGACGTGGA
AGGGGTGGTGAACAAGATGTGCTTCCGCAGGATGATGTGGACGAAGTGGG
TCGTGGACACGGAGTGCCTGCTGGACGCAGGGGTGTGGTCCTGAAGGCTG
TGGCTGACGCCCACTCCTCCGCGGTCGTTTCAGTCAGGTGCTTCGTGCAG
GGGGGAGGGGGCGGCGGCGGCGGTGGCAGCAGCTCGGCGGGGAGCTCTGA
CCCCGCCGCCATCACGGCAGACGTGGAAGGGGTGGTGAACAAGATGTGCT
TCCGCAGGATGATGTGGACGAAGTGGGTCGTGGACACGGAGTGCCTGCTG
GACGGCGCGGCCGGCCCCATCCCTGCGGTCTGCGTTTTGCCGAGCTGGAC
AGACGCCGGGGGCTCCGCCGCTACTACGGCTGGAGGGGGGGGTGTTCGGA
CCGGGGCGGTCAAAGGATTGTCCCCGGGTTTCTTTGACCTGGGCATGATG
GCCATGAGCTCGTGGAAGAACACCTTCATTGTTGGTATCTACCCCGAGGC
GCGGCCGGCCCCATCCCTGCGGTCTGCGTTTTGCCGAGCTGGACAGACGC
CGGGGGCTCCGCCGCTACTACGGCTGGAGGGGGGGGTGTTCGGACCGGGG
CGGTCAAAGGATTGTCCCCGGGTTTCTTTGACCTGGGCATGATGGCCATG
AGCTCGTGGAAGAACACCTTCATTGTTGGTATCTACCCCGAGGTCAAGGT
GATCCACAAGTGGCCGCGCCCGCCACTGTTTTCTGCGGGGGGCGGGTCGG
CGGCAGCAGCGGCGGCGGCAGCAGCGGATCACCTCCCTCCACCGTGTCTC
TCGTGGGGACCGCCCCAGCCCTCGGCGGCGCGCGCGGGGGCCCCGTCGAT
GGCGCTGCTGGCGAGGGGGTGGGGGAACTCCATCCAGATTCTCGCCGCGA
CGCGCGCCACGGCCGACACGGGCGGGAGTGGGGGAGCGGGAAAGGGCGGC
GGGATGAGATGGCCCGGTCTTGCGGTCGTGAAAGAGCTCAGCGCGAGCGC
CCCGGTGGTGGCGGTGGAGTGGCTCCGCGAGCAGGTCAAGGTGATCCACA
AGTGGCCGCGCCCGCCACTGTTTTCTGCGGGGGGCGGGTCGGCGGCAGCA
GCGGCGGCGGCAGCAGCGGATCACCTCCCTCCACCGTGTCTCTCGTGGGG
ACCGCCCCAGCCCTCGGCGGCGCGCGCGGGGGCCCCGTCGATGGCGCTGC
TGGCGAGGGGGTGGGGGAACTCCATCCAGATTCTCGCCGCGACGCGCGCC
ACGGCCGACACGGGCGGGAGTGGGGGAGCGGGAAAGGGCGGCGGGATGAG
ATGGCCCGGTCTTGCGGTCGTGAAAGAGCTCAGCGCGAGCGCCCCGGTGG
TGGCGGTGGAGTGGCTCCGCGAGCAGGTCCTGGCATACCTGGACGCGGAC
ATGGAGCTGTGCGTGCTGGACACGCGCGCCGGCACCGAGCTGGAGCACGC
CAGCCTGTCCACCCTCGGGGTGTCCGTCTCGCCGATCTTACCGCCGCCGC
CTTCCTCCTCCTCTTCTCTGGCTCCGCCGCCGCCGCCGCCGGGGGCACAG
TCGCCTCTTCCGGGCGGCAGTAGCGGAGCGTCGTCGTCCGGTGCAAGCGG
CGATGCTGTGTCCTCGCCGACGCTTCCCCCCCCCCCCCCTCCTCCCCTGG
GCCCCTACCACAACGCGTTCCGCGCGTGCGAGGGCCGGCTTTACCTCCTC
GGGAGGCAGGAGCTGAGGGCGGTGAGAGTGCAGGGGTGGTCCCAGCGGGT
GGAGTCTCTCGTGCAGGCCGGGGAGTGGCTCGAGGCCCTCGCCGTGGCGC
TCGATCACTTCGAGCAGAAGATCCTGCCGGCGGAGAACGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGC
GGAGGGAACGATGGGTGCCGACGGAAGCGGCGGAGCGTCTGCTCACGGCA
GTGACGGGGGTTATTCCGGCGCTGGAGGTTTTGGCGCGGGCTCGCGTCAC
GGCAGCAGCAGCGGCGACCCTTGGGGAGGCGGCGCGTCCTGGCATACCTG
GACGCGGACATGGAGCTGTGCGTGCTGGACACGCGCGCCGGCACCGAGCT
GGAGCACGCCAGCCTGTCCACCCTCGGGGTGTCCGTCTCGCCGATCTTAC
CGCCGCCGCCTTCCTCCTCCTCTTCTCTGGCTCCGCCGCCGCCGCCGCCG
GGGGCACAGTCGCCTCTTCCGGGCGGCAGTAGCGGAGCGTCGTCGTCCGG
TGCAAGCGGCGATGCTGTGTCCTCGCCGACGCTTCCCCCCCCCCCCCCTC
CTCCCCTGGGCCCCTACCACAACGCGTTCCGCGCGTGCGAGGGCCGGCTT
TACCTCCTCGGGAGGCAGGAGCTGAGGGCGGTGAGAGTGCAGGGGTGGTC
CCAGCGGGTGGAGTCTCTCGTGCAGGCCGGGGAGTGGCTCGAGGCCCTCG
CCGTGGCGCTCGATCACTTCGAGCAGAAGATCCTGCCGGCGGAGAACGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCAGCGGCGGCGGCGGCGGCGGCAGC
GGCGGCGGCGGAGGGAACGATGGGTGCCGACGGAAGCGGCGGAGCGTCTG
CTCACGGCAGTGACGGGGGTTATTCCGGCGCTGGAGGTTTTGGCGCGGGC
TCGCGTCACGGCAGCAGCAGCGGCGACCCTTGGGGAGGCGGCGCGTCGGC
AGCAGCGCAGACCGCTGCCGCCGCCGCCGCCGAGGTCGGAGGCGGCCGAG
CACATCAGCGATCTCCTCGCGCAGTATCTCCGGCTGGCGATCAACAACGC
GCCCGCCGCGGAGTCGCCCTCGGCGTTGGCGGCGGCGGCGGGGGGGGCGG
GGGCAATGGGCTCGTCGGGGGCTGGGGGGAGGGCGCGGATCAACCTGGCG
CACAGCCACTTTCAGATGCTGGCCGGGGTGTGCGCGGAGTTCTGCGCCGT
TACGGGGAGGCTGGACATGCTGTTCGGGCCTATCTTCCACGCGTTCCGGG
CACGTGGGCAACAGGGGTCGGCAGCAGCGCAGACCGCTGCCGCCGCCGCC
GCCGAGGTCGGAGGCGGCCGAGCACATCAGCGATCTCCTCGCGCAGTATC
TCCGGCTGGCGATCAACAACGCGCCCGCCGCGGAGTCGCCCTCGGCGTTG
GCGGCGGCGGCGGGGGGGGCGGGGGCAATGGGCTCGTCGGGGGCTGGGGG
GAGGGCGCGGATCAACCTGGCGCACAGCCACTTTCAGATGCTGGCCGGGG
TGTGCGCGGAGTTCTGCGCCGTTACGGGGAGGCTGGACATGCTGTTCGGG
CCTATCTTCCACGCGTTCCGGGCACGTGGGCAACAGGGGGTGTTCTTGGA
CACGCTGGAGCCGTACGTGCTCATGGCCAAGCTCAAGACGCTGTCGCCCG
AGGTCGTGGCGGCCTTCATCGACAGGTGTCAGGGTGTTCTTGGACACGCT
GGAGCCGTACGTGCTCATGGCCAAGCTCAAGACGCTGTCGCCCGAGGTCG
TGGCGGCCTTCATCGACAGGTGTCAGAGCGGCGGCGACATGATCGCCGCC
GAGCGGCTCGTGCTCCGGCTCGATCCCCGGTCGCTGGACCTCGCCACCGC
GCTCCCGCTGCTCCGCAGACACCGGCTGCACTCGGCGCTCCTGGCGGTGC
GGGCGTCCAGAGGCGACTACGTGTCTTCGGTGGAGGAGGTAGCGGCGGCG
ACATGATCGCCGCCGAGCGGCTCGTGCTCCGGCTCGATCCCCGGTCGCTG
GACCTCGCCACCGCGCTCCCGCTGCTCCGCAGACACCGGCTGCACTCGGC
GCTCCTGGCGGTGCGGGCGTCCAGAGGCGACTACGTGTCTTCGGTGGAGG
AGGT
back to top