mRNA_L-elsbetiae_contig8718.17743.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8718.17743.1
Unique NamemRNA_L-elsbetiae_contig8718.17743.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8718.17743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8718contigL-elsbetiae_contig8718:4621..5562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size943
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.8505378-CDS-L-elsbetiae_contig8718:4620..55621622816951.8505378-CDS-L-elsbetiae_contig8718:4620..5562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8718 4621..5562 +
1691683936.631408-CDS-L-elsbetiae_contig8718:4620..55621691683936.631408-CDS-L-elsbetiae_contig8718:4620..5562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8718 4621..5562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8718.17743.1prot_L-elsbetiae_contig8718.17743.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8718 4621..5562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8718.17743.1

>prot_L-elsbetiae_contig8718.17743.1 ID=prot_L-elsbetiae_contig8718.17743.1|Name=mRNA_L-elsbetiae_contig8718.17743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
LQRTAEEASAGAAAAAADRGGAGGGCGSGSGSGSGSGGQSLVKTATTTTT
MMTTLPLPSTDGAVMLPLARTAAPAEGEESPSEGGGNVVYLPRSPTGGAE
SVGVNPVYLPRSTAGGAENAGDNALYLPRSPTGGDGPGVLAVDTSFPQAE
EPVAAGVAARSPPPPPPRRLESPRSRPEERTPATAAAPQHQPSASSQQQE
QQRPPPPPPRKLSPRSTETLAPPSGLEPTASAAATAAAATAATATIVRPP
PPPPPRPQQKKNDELKTPPAVLTAAAAAPATAPAPAKKSGDPRSRSPRPR
PPAGAPPVATKQGQ
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mRNA from alignment at L-elsbetiae_contig8718:4621..5562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8718.17743.1 ID=mRNA_L-elsbetiae_contig8718.17743.1|Name=mRNA_L-elsbetiae_contig8718.17743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig8718:4621..5562+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGCGAACCGCAGAAGAAGCCTCAGCGGGGGCGGCGGCGGCGGCAGC
GGACCGAGGCGGAGCTGGCGGTGGCTGCGGTAGCGGTAGCGGTAGCGGTA
GCGGTAGCGGTGGTCAGAGTTTGGTGAAGACGGCAACGACGACGACGACG
ATGATGACCACGCTTCCTCTCCCAAGTACGGACGGCGCGGTGATGCTCCC
GCTGGCGAGAACCGCCGCACCCGCCGAGGGCGAAGAATCTCCGTCGGAAG
GAGGGGGCAACGTCGTGTATCTGCCGCGGTCGCCGACGGGTGGGGCGGAG
AGCGTCGGAGTGAACCCCGTGTATCTGCCGCGCTCGACGGCTGGCGGGGC
GGAGAACGCCGGAGACAACGCTCTGTACTTGCCGCGATCGCCGACGGGGG
GCGACGGTCCGGGGGTGCTTGCGGTGGACACGAGTTTCCCACAAGCGGAG
GAGCCCGTAGCCGCGGGAGTGGCGGCGCGCTCGCCGCCGCCGCCGCCGCC
TCGAAGGCTGGAGTCCCCGCGCTCGAGGCCGGAAGAAAGGACACCGGCGA
CCGCTGCAGCGCCGCAACATCAGCCGTCGGCGTCGTCGCAGCAGCAAGAA
CAGCAGCGGCCGCCTCCGCCACCGCCACGGAAGCTATCGCCGCGGTCGAC
AGAAACGCTGGCGCCACCGTCTGGATTGGAACCAACCGCGTCGGCGGCAG
CAACAGCGGCAGCAGCAACGGCAGCAACGGCCACGATTGTACGGCCACCA
CCACCGCCGCCGCCTCGACCACAGCAAAAAAAAAACGACGAATTGAAAAC
ACCACCGGCAGTTCTGACGGCGGCGGCGGCAGCTCCGGCCACGGCTCCGG
CTCCGGCCAAGAAAAGCGGTGACCCCCGTTCCCGGTCTCCTCGGCCACGG
CCACCGGCGGGAGCCCCGCCAGTCGCCACCAAGCAAGGTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8718:4621..5562+

>mRNA_L-elsbetiae_contig8718.17743.1 ID=mRNA_L-elsbetiae_contig8718.17743.1|Name=mRNA_L-elsbetiae_contig8718.17743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig8718:4621..5562+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGCGAACCGCAGAAGAAGCCTCAGCGGGGGCGGCGGCGGCGGCAGC
GGACCGAGGCGGAGCTGGCGGTGGCTGCGGTAGCGGTAGCGGTAGCGGTA
GCGGTAGCGGTGGTCAGAGTTTGGTGAAGACGGCAACGACGACGACGACG
ATGATGACCACGCTTCCTCTCCCAAGTACGGACGGCGCGGTGATGCTCCC
GCTGGCGAGAACCGCCGCACCCGCCGAGGGCGAAGAATCTCCGTCGGAAG
GAGGGGGCAACGTCGTGTATCTGCCGCGGTCGCCGACGGGTGGGGCGGAG
AGCGTCGGAGTGAACCCCGTGTATCTGCCGCGCTCGACGGCTGGCGGGGC
GGAGAACGCCGGAGACAACGCTCTGTACTTGCCGCGATCGCCGACGGGGG
GCGACGGTCCGGGGGTGCTTGCGGTGGACACGAGTTTCCCACAAGCGGAG
GAGCCCGTAGCCGCGGGAGTGGCGGCGCGCTCGCCGCCGCCGCCGCCGCC
TCGAAGGCTGGAGTCCCCGCGCTCGAGGCCGGAAGAAAGGACACCGGCGA
CCGCTGCAGCGCCGCAACATCAGCCGTCGGCGTCGTCGCAGCAGCAAGAA
CAGCAGCGGCCGCCTCCGCCACCGCCACGGAAGCTATCGCCGCGGTCGAC
AGAAACGCTGGCGCCACCGTCTGGATTGGAACCAACCGCGTCGGCGGCAG
CAACAGCGGCAGCAGCAACGGCAGCAACGGCCACGATTGTACGGCCACCA
CCACCGCCGCCGCCTCGACCACAGCAAAAAAAAAACGACGAATTGAAAAC
ACCACCGGCAGTTCTGACGGCGGCGGCGGCAGCTCCGGCCACGGCTCCGG
CTCCGGCCAAGAAAAGCGGTGACCCCCGTTCCCGGTCTCCTCGGCCACGG
CCACCGGCGGGAGCCCCGCCAGTCGCCACCAAGCAAGGTCAACTCCAGCG
AACCGCAGAAGAAGCCTCAGCGGGGGCGGCGGCGGCGGCAGCGGACCGAG
GCGGAGCTGGCGGTGGCTGCGGTAGCGGTAGCGGTAGCGGTAGCGGTAGC
GGTGGTCAGAGTTTGGTGAAGACGGCAACGACGACGACGACGATGATGAC
CACGCTTCCTCTCCCAAGTACGGACGGCGCGGTGATGCTCCCGCTGGCGA
GAACCGCCGCACCCGCCGAGGGCGAAGAATCTCCGTCGGAAGGAGGGGGC
AACGTCGTGTATCTGCCGCGGTCGCCGACGGGTGGGGCGGAGAGCGTCGG
AGTGAACCCCGTGTATCTGCCGCGCTCGACGGCTGGCGGGGCGGAGAACG
CCGGAGACAACGCTCTGTACTTGCCGCGATCGCCGACGGGGGGCGACGGT
CCGGGGGTGCTTGCGGTGGACACGAGTTTCCCACAAGCGGAGGAGCCCGT
AGCCGCGGGAGTGGCGGCGCGCTCGCCGCCGCCGCCGCCGCCTCGAAGGC
TGGAGTCCCCGCGCTCGAGGCCGGAAGAAAGGACACCGGCGACCGCTGCA
GCGCCGCAACATCAGCCGTCGGCGTCGTCGCAGCAGCAAGAACAGCAGCG
GCCGCCTCCGCCACCGCCACGGAAGCTATCGCCGCGGTCGACAGAAACGC
TGGCGCCACCGTCTGGATTGGAACCAACCGCGTCGGCGGCAGCAACAGCG
GCAGCAGCAACGGCAGCAACGGCCACGATTGTACGGCCACCACCACCGCC
GCCGCCTCGACCACAGCAAAAAAAAAACGACGAATTGAAAACACCACCGG
CAGTTCTGACGGCGGCGGCGGCAGCTCCGGCCACGGCTCCGGCTCCGGCC
AAGAAAAGCGGTGACCCCCGTTCCCGGTCTCCTCGGCCACGGCCACCGGC
GGGAGCCCCGCCAGTCGCCACCAAGCAAGGTCAA
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