mRNA_L-elsbetiae_contig8713.17740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8713.17740.1
Unique NamemRNA_L-elsbetiae_contig8713.17740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: D8LDQ1_ECTSI (Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDQ1_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 3.530e-135
Identity = 198/236 (83.90%), Postives = 218/236 (92.37%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARDDAGEK--EVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQV 702
            VEVHLGTIV+DV G +EG  PDGGSPL+GV  R+ + ++  EV LRGLFYAIGHRPNTGL GGQ+ELD+QGYIKVKAGTPETNVEGVFAAGDVQD+EWRQAITAAGSGCTAALAAERYLA  G+LREVHQE+QKSRPKP K+ E K V+E+LKTF+I+ETRHRGAYAYQRLYFESDRPLLVKY+SPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPD+AQNAGITGTPTVQ+
Sbjct:  214 VEVHLGTIVEDVLGETEGTSPDGGSPLTGVRVRNTSSDESTEVPLRGLFYAIGHRPNTGLLGGQIELDEQGYIKVKAGTPETNVEGVFAAGDVQDREWRQAITAAGSGCTAALAAERYLATKGVLREVHQERQKSRPKPVKDPEEKPVVENLKTFEIEETRHRGAYAYQRLYFESDRPLLVKYISPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDIAQNAGITGTPTVQI 449
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: UPI001A05A53F (Thioredoxin-disulfide reductase n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A05A53F)

HSP 1 Score: 244 bits (623), Expect = 2.010e-75
Identity = 127/235 (54.04%), Postives = 160/235 (68.09%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARD--DAGEKEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            + VH  T   DV G  EG        + G+  RD     EKE+ +RGLFYAIGH PNT LF GQ++LD+ GYI  K  + ETN+EGV+AAGDVQD E+RQAITAAG+GC AAL AER+L++NGLL+E HQ +   RP    E+ +K   E    FDI    H G YA ++LY ESDR ++VKY SPTCGPC  L  +L +V+DE  D +H+VE+DITE PD+A++AGI GTPTVQ
Sbjct:  199 ITVHWNTEAVDVLGDDEG--------MKGLRLRDRQTGAEKEIAVRGLFYAIGHTPNTSLFTGQIDLDEVGYIVTKPNSVETNIEGVYAAGDVQDHEYRQAITAAGTGCMAALLAERWLSSNGLLQEFHQTEASERPHA--ETPHKTEAEQASEFDIHRVHHEGGYALRKLYHESDRLIVVKYASPTCGPCHTLKPILSKVIDEFGDQVHYVEIDITEDPDIAESAGIIGTPTVQ 423
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A846AHV1_9CYAN (FAD-dependent oxidoreductase n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AHV1_9CYAN)

HSP 1 Score: 239 bits (610), Expect = 8.690e-74
Identity = 129/237 (54.43%), Postives = 167/237 (70.46%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARD--DAGEKEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPA-KESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQV 702
            + VH  T   DVFG         G  L G+  RD     E+++ ++GLFYAIGH PNT LF GQ++LD  GYI+V+ G+ ET+VEG++AAGDVQD E+RQAITAAG+GC AA+ AER+L+ANGL+RE HQ +   + + A ++SE +   E    FD   TRH G YA ++LY ESDRP+LVKY SPTCGPC  L  +L +VVDE    IH+VE+DITE PD+A++AGITGTPTVQ+
Sbjct:  174 ITVHWHTQATDVFGA--------GDRLEGIHIRDLQTNEERDLHVKGLFYAIGHTPNTSLFKGQLDLDTVGYIQVRPGSVETSVEGIYAAGDVQDHEFRQAITAAGTGCMAAMLAERWLSANGLVREYHQTQASEKAETAGRKSEYQQAAE----FDPGTTRHVGGYALRKLYHESDRPILVKYASPTCGPCHTLKPILSKVVDEFEGKIHYVEIDITEDPDIAESAGITGTPTVQI 398
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: UPI0016866325 (thioredoxin-disulfide reductase n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016866325)

HSP 1 Score: 237 bits (604), Expect = 1.560e-72
Identity = 127/235 (54.04%), Postives = 159/235 (67.66%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARDDAGEKEVEL--RGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            + VH  T V DVFG  +         + G+   D   ++E EL  RGLFYAIGH PNT LF GQ+ELD  GYI  K G+ ETNVEGV+AAGDVQD E+RQAITAAG+GC AA+ AER+L+ NGL +E HQ       KPA+E   K   E    FD++ TRH G YA ++LY ESDR ++VKY SPTCGPC  L  +L +VVDE    +H++E+DI E PD+A++AG+TGTPTVQ
Sbjct:  203 ITVHWNTTVLDVFGEED--------HMKGLRLLDVKTKEESELHVRGLFYAIGHTPNTSLFKGQIELDDVGYIVTKPGSVETNVEGVYAAGDVQDHEFRQAITAAGTGCMAAMLAERWLSVNGLAQEFHQSADSE--KPAEEHHYKTEEEQAAEFDLNRTRHVGGYALRKLYHESDRLIVVKYASPTCGPCHTLKPILSKVVDEFDGQVHYIEIDIEEDPDIAESAGVTGTPTVQ 427
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A835ZEJ8_9STRA (Thioredoxin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ8_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.620e-72
Identity = 132/257 (51.36%), Postives = 169/257 (65.76%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDG-GSPLSGVLARD-DAGE-KEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVI--------------------EDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQV 702
            V+VHL + V DV+G       D  GSPL G   ++ +  E  ++ LRG+FYAIGH+PNT LF G + LD+ GYIK + G P TN+EGVFAAGDVQD EWRQA+TAAG+GC+AALAAER+LA  GL++EV       RP                                + L TFDI+ T HRG+YA +RLY ES+RP++VKY+SP+CGPCKALG +L RV+ E   DIHFVEVDI+ SP++A++A I GTPTVQ+
Sbjct:  213 VQVHLNSAVLDVYGDGAAGAGDTQGSPLKGARVKNLETNEVTDLPLRGIFYAIGHKPNTELFRGAIMLDEAGYIKTQPGLPTTNLEGVFAAGDVQDHEWRQAVTAAGTGCSAALAAERFLAERGLIQEV-------RPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTLATFDINATSHRGSYALRRLYHESERPIVVKYISPSCGPCKALGPILARVIGEFERDIHFVEVDISASPEIAESANIMGTPTVQI 462
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A355DNW9_9CYAN (Thioredoxin (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11162 TaxID=2055781 RepID=A0A355DNW9_9CYAN)

HSP 1 Score: 229 bits (585), Expect = 2.840e-72
Identity = 116/209 (55.50%), Postives = 157/209 (75.12%), Query Frame = 1 
Query:   79 LSGVLARDD--AGEKEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            ++GV  RD     E++++++GLFYAIGH PNT LF GQ+ELD+ GYI  K G+ ET++EGV+AAGDVQD E+RQAITAAG+GC AAL AER+L+AN L++E HQ  +  +P   K +E+K V +  +TFDI+ TRH G YA ++L+ +SDR ++VKYVSP CGPC  L  +L++VV+E    IHFVEVDI   P++A+NA + GTPTVQ
Sbjct:   14 MTGVKLRDTQTGEERDLQVKGLFYAIGHTPNTSLFNGQLELDEVGYIVTKPGSVETSIEGVYAAGDVQDHEYRQAITAAGTGCMAALLAERWLSANNLIQEYHQNPESEQP-TTKVTEDKPVADTAETFDINATRHVGGYALRKLFHDSDRLIMVKYVSPNCGPCHTLKPILDKVVNEFEGKIHFVEVDIEAEPEIAENAQVMGTPTVQ 221
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A6P0SI10_9CYAN (Thioredoxin reductase n=25 Tax=Moorena TaxID=1155738 RepID=A0A6P0SI10_9CYAN)

HSP 1 Score: 235 bits (600), Expect = 6.530e-72
Identity = 125/238 (52.52%), Postives = 171/238 (71.85%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARD-DAGE-KEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAK--ESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQV 702
            + +H  T   DVFG       D GS ++GV  +D + GE K++ +RG+FYAIGH PNT LF GQ+ELDQ GYI  K+G+ ET+V+GV+A GDVQD E+RQAITAAG+GC  A+ AER+L+A+ L +E HQ+    +P   K  E+E K+V +  +TFDI ETRH G YA ++L+ ESDR ++VKY+SP+CGPCK L  +L++VVDE    IHFVE+DI +  ++A+NA + GTPTVQ+
Sbjct:  203 ITIHWNTQPVDVFG-------DNGS-MTGVRVQDTETGEEKDISVRGMFYAIGHTPNTSLFEGQLELDQMGYIVTKSGSVETSVDGVYAVGDVQDHEFRQAITAAGTGCMGAMLAERWLSAHNLTQEYHQQPASEQPTAEKPEETEEKVVAQTAETFDIKETRHLGGYALRKLFHESDRIIMVKYISPSCGPCKVLKPMLDKVVDEYNGKIHFVEIDIDQDREIAENAQVVGTPTVQL 432
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: UPI001F54B46F (thioredoxin-disulfide reductase n=2 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001F54B46F)

HSP 1 Score: 235 bits (600), Expect = 6.700e-72
Identity = 125/214 (58.41%), Postives = 156/214 (72.90%), Query Frame = 1 
Query:   67 GGSPLSGVLARDD--AGEKEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKP-AKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            G + + G+  RD     E+++ +RGLFYAIGH PNTGLF GQ++LD  GYI+VK GT  T+VEGVFAAGDVQD E+RQAITAAG+GC AAL AERYL AN LL+E HQ     +P+   + +E K V E    FD D TRH G YA ++LY ESDR ++VKY SPTCGPC  L  +L +VVDE    IH++E+DITE PD+A++AG+TGTPTVQ
Sbjct:  221 GDNLMKGLRLRDTQTGEERDLPVRGLFYAIGHTPNTGLFKGQLDLDDVGYIQVKPGTVATSVEGVFAAGDVQDHEYRQAITAAGTGCMAALLAERYLVANDLLQEFHQSAASEKPEEEGRVAEYKQVAE----FDPDTTRHVGGYALRKLYHESDRLIIVKYASPTCGPCHTLKPILNKVVDEFEGRIHYIEIDITEDPDIAESAGVTGTPTVQ 430
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A2N6L3V7_9CYAN (Thioredoxin reductase n=25 Tax=Nostocales TaxID=1161 RepID=A0A2N6L3V7_9CYAN)

HSP 1 Score: 234 bits (596), Expect = 2.110e-71
Identity = 127/239 (53.14%), Postives = 167/239 (69.87%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARDD--AGEKEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQ----KSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            +++H  T   DVFG            + GV  R++    E E++++GLFYAIGH PNT LF GQ+ELD+ GYI  K G+PET+VEGVFAAGDVQD E+RQAITAAGSGC AA+ AER+L+ANGL++E HQ  Q    +  P+P   + N+   +D   FD++ TRH G+YA ++L+ ESDR L+VKYV+P CGPC  L  +L +VVDE    IHFVE+DI +  ++A+NAGITGTPTVQ
Sbjct:  203 IQIHWNTEAVDVFGNGH---------MKGVRIRNNKTGEESELQVKGLFYAIGHTPNTSLFKGQLELDEVGYIVTKPGSPETSVEGVFAAGDVQDHEYRQAITAAGSGCMAAMLAERWLSANGLIQEFHQVSQTPDNELEPQP---TSNRTPTDD--EFDLNATRHEGSYALRKLFHESDRLLVVKYVAPGCGPCHTLKPILNKVVDEFDGKIHFVEIDIDKDREIAENAGITGTPTVQ 427
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BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Match: A0A7C9TWH4_9CYAN (Thioredoxin reductase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TWH4_9CYAN)

HSP 1 Score: 234 bits (596), Expect = 2.220e-71
Identity = 127/235 (54.04%), Postives = 162/235 (68.94%), Query Frame = 1 
Query:    1 VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARDDAGE--KEVELRGLFYAIGHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAITAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDLKTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVVDEMADDIHFVEVDITESPDVAQNAGITGTPTVQ 699
            + VH  T   DVFGT        G  + G+  +++     +E+  RGLFYAIGH PNT LF GQ+ELD+ GYI  K G+ ET+VEGV+AAGDVQD E+RQAITAAG+GC AA+ AER+L+  GL+RE HQ  +   P PA + E K V +   +FDI  TRH G+YA ++LY ESDR L+VKYVSPTCGPC  L  +L +VVDE    IHFVE+DI +  D+A+ AG+TGTPT+Q
Sbjct:  203 ITVHWNTEAVDVFGTE-------GYQMEGLKIKNNKTGTLEELSARGLFYAIGHDPNTKLFQGQLELDEVGYIITKPGSVETSVEGVYAAGDVQDHEFRQAITAAGTGCMAAMLAERWLSEKGLIREFHQTAESEHPAPAAKEE-KEVADTADSFDIAVTRHVGSYALRKLYHESDRLLMVKYVSPTCGPCHTLKPILNKVVDEFDGKIHFVEIDIEQDQDIAETAGVTGTPTIQ 429
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8713.17740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDQ1_ECTSI3.530e-13583.90Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=287... [more]
UPI001A05A53F2.010e-7554.04Thioredoxin-disulfide reductase n=1 Tax=Synechococ... [more]
A0A846AHV1_9CYAN8.690e-7454.43FAD-dependent oxidoreductase n=1 Tax=Leptolyngbya ... [more]
UPI00168663251.560e-7254.04thioredoxin-disulfide reductase n=1 Tax=Oscillator... [more]
A0A835ZEJ8_9STRA2.620e-7251.36Thioredoxin reductase n=1 Tax=Tribonema minus TaxI... [more]
A0A355DNW9_9CYAN2.840e-7255.50Thioredoxin (Fragment) n=1 Tax=Cyanobacteria bacte... [more]
A0A6P0SI10_9CYAN6.530e-7252.52Thioredoxin reductase n=25 Tax=Moorena TaxID=11557... [more]
UPI001F54B46F6.700e-7258.41thioredoxin-disulfide reductase n=2 Tax=Pseudanaba... [more]
A0A2N6L3V7_9CYAN2.110e-7153.14Thioredoxin reductase n=25 Tax=Nostocales TaxID=11... [more]
A0A7C9TWH4_9CYAN2.220e-7154.04Thioredoxin reductase n=1 Tax=Oscillatoria sp. SIO... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8713contigL-elsbetiae_contig8713:3012..8227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue5.1e-109
Seed eggNOG ortholog2880.D8LDQ1
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00384,ko:K03671
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,ko04621,ko05418,map00450,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006109,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009889,GO:0009987,GO:0010380,GO:0010556,GO:0010581,GO:0010675,GO:0010962,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019222,GO:0019725,GO:0030234,GO:0031323,GO:0031326,GO:0032881,GO:0032885,GO:0042221,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051186,GO:0051187,GO:0051193,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0072593,GO:0080090,GO:0090056,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1901401,GO:1901463,GO:1990748,GO:2000112,GO:2000904
EggNOG free text desc.thioredoxin-disulfide reductase activity
EggNOG OGsCOG0492@1,COG0526@1,KOG0404@2759,KOG0907@2759
EC1.8.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Ec32 ortholog descriptionNADP-thioredoxin reductase C, plastid protein
Ec32 orthologEc-19_001510.1
Exons6
Model size711
Cds size711
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8713.17740.1prot_L-elsbetiae_contig8713.17740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8713 3012..8227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.6845071-CDS-L-elsbetiae_contig8713:3011..31521622816951.6845071-CDS-L-elsbetiae_contig8713:3011..3152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 3012..3152 -
1691683936.5074503-CDS-L-elsbetiae_contig8713:3011..31521691683936.5074503-CDS-L-elsbetiae_contig8713:3011..3152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 3012..3152 -
1622816951.695007-CDS-L-elsbetiae_contig8713:4268..43301622816951.695007-CDS-L-elsbetiae_contig8713:4268..4330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 4269..4330 -
1691683936.5185635-CDS-L-elsbetiae_contig8713:4268..43301691683936.5185635-CDS-L-elsbetiae_contig8713:4268..4330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 4269..4330 -
1622816951.7045448-CDS-L-elsbetiae_contig8713:4788..48641622816951.7045448-CDS-L-elsbetiae_contig8713:4788..4864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 4789..4864 -
1691683936.527386-CDS-L-elsbetiae_contig8713:4788..48641691683936.527386-CDS-L-elsbetiae_contig8713:4788..4864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 4789..4864 -
1622816951.7170556-CDS-L-elsbetiae_contig8713:6357..64951622816951.7170556-CDS-L-elsbetiae_contig8713:6357..6495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 6358..6495 -
1691683936.5361333-CDS-L-elsbetiae_contig8713:6357..64951691683936.5361333-CDS-L-elsbetiae_contig8713:6357..6495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 6358..6495 -
1622816951.7274375-CDS-L-elsbetiae_contig8713:7272..73861622816951.7274375-CDS-L-elsbetiae_contig8713:7272..7386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 7273..7386 -
1691683936.5457785-CDS-L-elsbetiae_contig8713:7272..73861691683936.5457785-CDS-L-elsbetiae_contig8713:7272..7386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 7273..7386 -
1622816951.7374563-CDS-L-elsbetiae_contig8713:8047..82271622816951.7374563-CDS-L-elsbetiae_contig8713:8047..8227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 8048..8227 -
1691683936.566969-CDS-L-elsbetiae_contig8713:8047..82271691683936.566969-CDS-L-elsbetiae_contig8713:8047..8227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8713 8048..8227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8713.17740.1

>prot_L-elsbetiae_contig8713.17740.1 ID=prot_L-elsbetiae_contig8713.17740.1|Name=mRNA_L-elsbetiae_contig8713.17740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
VEVHLGTIVDDVFGTSEGDVPDGGSPLSGVLARDDAGEKEVELRGLFYAI
GHRPNTGLFGGQVELDQQGYIKVKAGTPETNVEGVFAAGDVQDKEWRQAI
TAAGSGCTAALAAERYLAANGLLREVHQEKQKSRPKPAKESENKLVIEDL
KTFDIDETRHRGAYAYQRLYFESDRPLLVKYVSPTCGPCKALGRLLERVV
DEMADDIHFVEVDITESPDVAQNAGITGTPTVQVKT*
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mRNA from alignment at L-elsbetiae_contig8713:3012..8227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8713.17740.1 ID=mRNA_L-elsbetiae_contig8713.17740.1|Name=mRNA_L-elsbetiae_contig8713.17740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5216bp|location=Sequence derived from alignment at L-elsbetiae_contig8713:3012..8227- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAAGTGCACCTGGGCACGATCGTGGACGATGTTTTCGGGACGTCCGA
GGGGGACGTCCCGGACGGCGGTTCGCCTCTGTCGGGCGTGCTGGCCAGGG
ACGACGCAGGCGAAAAGGAGGTGGAGCTCCGCGGGCTGTTCTACGCCATA
GGGCACCGCCCCAACACGGGCCTCTTCGGGGTCAGTCTTCTTTTTTTTTT
TTTCTAAATAACTCCAGTGTTATTTTTGGTGCGAGGTCGCTCTCGGGTCT
GGTATTGTGGAGAGGTTGTTGAGTTTGGCTTGGCGGACACGTGCCTCGTG
TCATGAGGGTTTTAACTGAAAGGTCTGCTTGATGCTCGGATGGTGCAGAT
GTTTGGGGGTGCGATTAGTGTAGTTTGGTGCCTCTCTGAAATGCGTTATA
GGGGGTAATTAGCTCTTTCGGGATGCTCCTGGTCGCATTGTTCAAACATA
ACGCCCGGTTGATCTTGAAAGATTCCTACAGCTGCTGCTCCCGTACGTGC
CCTTCCACCTAGTCCAACCAAGTATTCCTCCGTCTGCTGCTCCCTTGCAT
GCCTTTCTACCTGTATGTATGTAGTCCAACCAAAGATTCTAACCCTAACC
CGAAGTATGTAAATAGTCCAACCCTAGTCCGACCAAATATTCCTCCGTCT
GCTGCTCCCTTGCATGCCTTTCCACCTGTATGTATGTAGTCCAACCAAAG
ATTCCTCCTCCCCCCCCTCCCCCCCCCACGCCGCGGTTGGCCACATGTTT
GGGGGCCTCAAGCCGAGCCAAACCACACAAATCTCCTCCCTGCACCCGTG
TTCCACTGCTGCTTTTTTGCCGCGCACGTTTCGCCCACCAGGGCCAGGTA
GAGTTAGACCAGCAGGGCTACATCAAGGTCAAGGCGGGAACACCAGAAAC
GAACGTGGAGGGCGTGTTTGCGGCGGGGGACGTGCAGGACAAGGAGTGGA
GACAGGTGCGCGATCGTCGTTGCACAGAAAGAGACAAATCTGTGTGACAC
ATAAATAAATACACGCAGCAACATCACCGCTCTTGTCGCCGGTCTCCGGG
GGGGCTAAATAGGATTCTTTGATTTTTCTTCGTGCGAGGTAGAATACCGC
CAGAAACCTGCGGAAAAACCTGGTTTTTGGGAGTTGTTTGTTGAGTTTTT
TCGCCTCGGTAGGTAGCAAGTACTTCCACGTGGGTTGTTGCACAGCAGTT
TTTAGCGTGACAACAGCAACAACAACGACGACGATGATGACAGCGACAAC
AGCGAACACTCGCTGGGACCACTCAAAAAGCCAACCCTTTTATTTGCACA
CAGGTCTAACTCTTCCCAGCCGCGGCTCGCGTCCGTACACAAGCCCTGGT
GCATATAGCTTTTACACCGGCGGAGTTATATATAAACCTAGGTTGCAGTT
TGGAGGTAGACGCGAAAAGAAGGCGTACGCTAGGTTTCCGGTGCTCTCGC
TGCCCCACGGCGCTAGGCCTAACGCACACCCCAACCACCCTTAACCTTAA
CCCCAACCCTAACCCACACGCCAGGCTAGGTCCTAACCCTAACCCACACC
CACACCCACACCCAAGGCCAGGTTGGTGTGCCGGGTTTAGGCCCTAGGTC
GCTGTACGTACGACCTCCTGGTGTATGTAAGATTTTACCCCAGGGCTGGT
GTATCCACGCCGCGCGTTCTCAGCCGGCGTTGTTCGGGATTGGTTTGATT
CGTTTTGGTCCCCCCCCCATGCGCGACGGCAGGCGATAACGGCAGCAGGA
AGCGGGTGTACCGCTGCCCTGGCTGCCGAGCGTTACCTGGCGGCGAATGG
CTTGTTGAGAGAGGTGCACCAGGAGAAGCAGAAGAGCCGCCCGAAGCCTG
CCAAGGAATCCGAAAATAAGGTACGGCAGTAGACTGCGGGCGCCGAGAGA
AAATGACACTATGGTCAGTCGGTATTTTATGTTATTTGTAGGTATTGGTT
AGGTAGATAAAACACGAGTAGAGCCCGGTCGCCCCGGTGGTCTAGTTGGT
ACCCCCGAACACCTTCTAGCAGGCAGGTCGTGAGTCCGAATCTCAGCGGA
AGTGACTTTTTCTTGCGAAGTGGGGGTTTTCTCTCGGTTCCGTCCCCGTC
AGTGGATAGCGCTGAGCGTGTGTACACAAACTTCGACCTCACCGTCGACG
AGGGAAAGGGATGGCTGAACCCTTCTCGCGACAAAAATCTTAGGCAAGCA
CCGCAGACGGGGGGAGTGGGGGCCTTGGGGGAAAAGGAACCCTTCTGTGT
GACCACAGTTCAATACTCTGGCAAGATGTCATCGTGAGAGGGAGAGGGAG
CCCATCGAGCACTGGAAATAAACGTGAAAAGAAAAAAAAACAGAGAAATT
GGAAGAACAGTTTTTGATGGGATGATTGTTGTTGTTGTTGTTTTTGTTGT
TGTTTTGTCTTGACATCAAAAACCGTCCCGATCTCTCCACCCAGTGCCTC
TCCATGCCCGTACTGTTCCAACACTTGATATGGTATGCAGCAACAATCGA
CGAATATTGAATTCTGCCGTGTTTAGTTGGTTTCTTGGTACGGTAATATT
GCGTGAGTTCGCACCCCCCCCCTGGACCGACTTTCAAAGGTCTATTCGGT
TACTCCACAACAAGAAGAGGTGTCAGTGCCGAAAGGAGTAACGTTGGAAA
GATCTCGTCGACAGGTGTCCGAAAACGTGTCGTTTGGTGTTGGCACCGTC
TTGGTTACGGAGTAATGGAGCTCTAAAAGTCGGTCCAGGAGGGGTCCGAC
CTCACTCATGAGTACGGTAGTCGAGAGAGTGGTTGGCAGACCGGGGCGAA
ACCGACCTCCTCACGGTATTGGCGATTGAGACGTTGAAATGCGGTGTGCG
CCCCTCGCTCGGCCTTGATGCTGTTCTTCTTGTGCTTGGTAAAACAAAAG
GGTTAGTTACGATGGCGTGGCTGGGTTGGCTGGGGTTAGGGGCACGATGG
CATGCTATGTAGCATGATATAATGTATGGTTGCGTTTAGCATGCTAATTA
ATTTGCACGCCACATAGCTGATGTAATCTCGAGGTGACGAGTCAGGCGCA
AGGAGCTGGGGGGGCCGAAGCGGTGCATTGCTTGTTTGCGAGTGAGCGAG
ACGCTGGTGAGCAACTACCATAGATACACATGATACTGCACATTGGCGTG
TTGGAAACGTTTGTGGTTCACGCCTTGGGCGCGCGATGGTCGACCCCACC
AACCCTACTCGCACGTGTACGTCTCAAGCCAGACCAGGAGCACCAAGCCG
CTGTTAAGCGGCTTGAGACCCGAAACACGCTGGACGCTCACCGCCGATCC
TGCCATGCAACCACCGCCGCCCGCCCATTCGCCCTTGCCTTCATTGTATT
TTGGGCCGAGCAGCTGGTTATAGAAGACTTGAAGACGTTCGATATCGACG
AAACGAGACATCGTGGGGCGTACGCGTACCAGCGGCTTTGTGAGTACCCC
CCAACAACCCGGCGGCGCTTGTATTTCTATATATATATTTTTTTTTGTTA
GATATGGCGTTGTAGCCGCAGCGTGCTTGCATCACACCCGCGATGTTTCG
TGGTCGGGGGGTACGGGCACGCGAGGGATGTGTGCAAGGCTTGGTGCCGA
TTCAGGGTTGAACCCCGGCCGTTAAGGGCGGGCGTTGTCTGTTTCGGGGA
GTGAGTGAGCAGCCTTTCTGCCTTTTCTTAACTCGGTTGCATTACTGCTG
CCTGGCTTGTAGGACGTTTGGCGGTATACGGTTGCGAACAGACCCCCCCG
CACGGAACCCATCAGAGGGCCCAATGGCCTTGACACCGGCCCCCGTCGCC
GGTCTTGCTTCTCCCGTACGATGGGCTCGCATGATTCCCACGCCATGTTG
TCTTATCTGCCCTCTTCGTCCCCTTTATTGTGCTCTCTTGTGCCCAGACT
TCGAGAGCGATCGTCCTCTCCTAGTCAAGTATGTCAGCCCGACCTGTGGC
CCGTGCAAGGTGCGTGGCTGTCATTATGTATGTTATGTAGTGCCCTCTGC
TGTCTTGAATGTTGTTGTTGTTGTTGTTGTTTTTGGTTTCTCACATTATT
GGGTTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTAGC
TAGACGACCCACCAATGGCAGTGAGTGTCGTGTTGTTCGGTTGGCCTTGG
TGCTTGTTGCTGGCGTTGTTGGTGTCGGCCTTGCTGCCGTGGATCCTGCG
GTCGATGCCAACGCAAACGCTCGGCGTATCGATCGCATTTGGCTCCGAGC
ACGACCGCGGTGCTTGCACATCGTGCGTCCTCGTCGTCGTCGTCGTCATT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTGACGTAAAAAACCGTTC
CGATCTCTCGACGCAGTACCTTCCTGTGTCCGTACTAATCCAACAGTAGC
GCATCGTTTTGGCACGCTCTAAATGCCGTTTTTCCGGGACGTCTACAAAC
GCACGACGGCTTTTTTGTGCGCGCATCCTTGTTGCAACGGACAGTCACTT
CTCCGGTTGCGATGGGACCCTACCATGTTGAAAACATCTCGGCAGGGCTA
GCCAGAGGTTACAGGACGTAGCTAAATAGTCTACACGTAGGTATGCATGT
TATGTCATACACTTGTGTTGAAGTCCTACGCGTTTTTCAAAAATTTCTTC
AAAAATATGTCAGTGGTCTACGTCCAACCTGTCAAAAATTCGTTCCAGGG
GCGGACTACTGCTGTTGCTGTAGACACGCTAAATAAAATAACCCTCCGTC
GCCTACTGGCGCAAGATATTTTTGATTAATGTATACAAATGTTAGCAGTC
TACGTCCGGTCTGTGAAAATGTCGTTCCAGAGGGATCTGTTGTAGGCATA
CCATGTAACTTACCAACCCCCCTTTTTCTTCCCATCCTAAGATATACTCA
CACATAATCCGTAGTCCATATGACATGTACAAGTTCGTTGGTGAAAAATA
ATCTTCAGAGGGTCGGTTGCAGTATAAACGTAAGCGCATCAAGCATTTTT
CTCTCGTTCTCGCTTTCCCCCTCCCGCGTCCGGTCCGGTCCGCCCATGCT
GTTTCGTGGACACCCACCGCGGCAGGCCCTGGGACGGCTGCTGGAGAGAG
TGGTAGACGAGATGGCGGACGACATTCACTTCGTTGAGGTCGACATCACC
GAGTCTCCGGATGTCGCCCAAAACGCGGGCATCACCGGAACCCCGACGGT
GCAGGTGAAAACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8713:3012..8227-

>mRNA_L-elsbetiae_contig8713.17740.1 ID=mRNA_L-elsbetiae_contig8713.17740.1|Name=mRNA_L-elsbetiae_contig8713.17740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig8713:3012..8227- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAAGTGCACCTGGGCACGATCGTGGACGATGTTTTCGGGACGTCCGA
GGGGGACGTCCCGGACGGCGGTTCGCCTCTGTCGGGCGTGCTGGCCAGGG
ACGACGCAGGCGAAAAGGAGGTGGAGCTCCGCGGGCTGTTCTACGCCATA
GGGCACCGCCCCAACACGGGCCTCTTCGGGGTGGAAGTGCACCTGGGCAC
GATCGTGGACGATGTTTTCGGGACGTCCGAGGGGGACGTCCCGGACGGCG
GTTCGCCTCTGTCGGGCGTGCTGGCCAGGGACGACGCAGGCGAAAAGGAG
GTGGAGCTCCGCGGGCTGTTCTACGCCATAGGGCACCGCCCCAACACGGG
CCTCTTCGGGGGCCAGGTAGAGTTAGACCAGCAGGGCTACATCAAGGTCA
AGGCGGGAACACCAGAAACGAACGTGGAGGGCGTGTTTGCGGCGGGGGAC
GTGCAGGACAAGGAGTGGAGACAGGGCCAGGTAGAGTTAGACCAGCAGGG
CTACATCAAGGTCAAGGCGGGAACACCAGAAACGAACGTGGAGGGCGTGT
TTGCGGCGGGGGACGTGCAGGACAAGGAGTGGAGACAGGCGATAACGGCA
GCAGGAAGCGGGTGTACCGCTGCCCTGGCTGCCGAGCGTTACCTGGCGGC
GAATGGCTTGTTGAGAGAGGTGCACCAGGAGAAGCAGAAGAGCCGCCCGA
AGCCTGCCAAGGAATCCGAAAATAAGGCGATAACGGCAGCAGGAAGCGGG
TGTACCGCTGCCCTGGCTGCCGAGCGTTACCTGGCGGCGAATGGCTTGTT
GAGAGAGGTGCACCAGGAGAAGCAGAAGAGCCGCCCGAAGCCTGCCAAGG
AATCCGAAAATAAGCTGGTTATAGAAGACTTGAAGACGTTCGATATCGAC
GAAACGAGACATCGTGGGGCGTACGCGTACCAGCGGCTTTCTGGTTATAG
AAGACTTGAAGACGTTCGATATCGACGAAACGAGACATCGTGGGGCGTAC
GCGTACCAGCGGCTTTACTTCGAGAGCGATCGTCCTCTCCTAGTCAAGTA
TGTCAGCCCGACCTGTGGCCCGTGCAAGACTTCGAGAGCGATCGTCCTCT
CCTAGTCAAGTATGTCAGCCCGACCTGTGGCCCGTGCAAGGCCCTGGGAC
GGCTGCTGGAGAGAGTGGTAGACGAGATGGCGGACGACATTCACTTCGTT
GAGGTCGACATCACCGAGTCTCCGGATGTCGCCCAAAACGCGGGCATCAC
CGGAACCCCGACGGTGCAGGTGAAAACATGAGCCCTGGGACGGCTGCTGG
AGAGAGTGGTAGACGAGATGGCGGACGACATTCACTTCGTTGAGGTCGAC
ATCACCGAGTCTCCGGATGTCGCCCAAAACGCGGGCATCACCGGAACCCC
GACGGTGCAGGTGAAAACATGA
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