mRNA_L-elsbetiae_contig8704.17731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8704.17731.1
Unique NamemRNA_L-elsbetiae_contig8704.17731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8704.17731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8704contigL-elsbetiae_contig8704:1121..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size986
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8704.17731.1prot_L-elsbetiae_contig8704.17731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8704 2266..3030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816950.9457364-UTR-L-elsbetiae_contig8704:1120..13111622816950.9457364-UTR-L-elsbetiae_contig8704:1120..1311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8704 1121..1311 +
1691683935.9084003-UTR-L-elsbetiae_contig8704:1120..13111691683935.9084003-UTR-L-elsbetiae_contig8704:1120..1311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8704 1121..1311 +
1622816950.9582832-UTR-L-elsbetiae_contig8704:2235..22651622816950.9582832-UTR-L-elsbetiae_contig8704:2235..2265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8704 2236..2265 +
1691683935.920719-UTR-L-elsbetiae_contig8704:2235..22651691683935.920719-UTR-L-elsbetiae_contig8704:2235..2265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8704 2236..2265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816950.9686437-CDS-L-elsbetiae_contig8704:2265..30301622816950.9686437-CDS-L-elsbetiae_contig8704:2265..3030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8704 2266..3030 +
1691683935.9329093-CDS-L-elsbetiae_contig8704:2265..30301691683935.9329093-CDS-L-elsbetiae_contig8704:2265..3030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8704 2266..3030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8704.17731.1

>prot_L-elsbetiae_contig8704.17731.1 ID=prot_L-elsbetiae_contig8704.17731.1|Name=mRNA_L-elsbetiae_contig8704.17731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MTPSADINWVSGPTGPLSRSEMRRARKSRNKKRAKIRKQERQQQQHQQQQ
HTTKEVAPPLRMDELPLVPNTVILPSHSDTRALTASPVAEPTADNCGTLE
AATGDATAAAVAADLVATRGERPTVGEEQANRVGDESLREVSPADCKQVW
RKPASVLPEDKQAVEESREGNGTRPTTTPQVDGEAKGAKKRDQPKASIYM
DITAEEYGKAKADAAVWARRKESALKMGDKGPSWFESETFLHYGQPPFQH
SSTEA
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mRNA from alignment at L-elsbetiae_contig8704:1121..3030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8704.17731.1 ID=mRNA_L-elsbetiae_contig8704.17731.1|Name=mRNA_L-elsbetiae_contig8704.17731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1910bp|location=Sequence derived from alignment at L-elsbetiae_contig8704:1121..3030+ (Laminarionema elsbetiae ELsaHSoW15)
CACAAATCTCTCTCGTCTCTCATCTCGACCCTCAAGACACCCATTGACAA
CATAACGCACACACACACAGAAACTAGACGCATCCAACCTTCGAGCCTCG
AGGAGTATCAGGCACCAAGGCATACACGGTCGGCGTACAAAAACGCCCAG
ACAACAGGAGTAAGAGACCCGGAAACGAGACCGCAAGCTCGGTGAGAGAG
ACACGGCTCGCGGGTTATTTGCGAAAGTTGGTGCTACTCTAGACTAGAGA
TACCCTACCGCCGTGCTTCACTGTCAGGAGGCAAATCAAGCGCAACATCG
GGCGCAAGACTGTCTCCCTCTCTCTCCCTGCCTGGGAACGGCTGTGTCCC
TCCCTGCCGTGGGATTCTGCGTTGCGGTCGTGGATAGACCTGGGTCTAGA
TCAATACTAGACTATCTATCTAGTAGCTTTACGCAGCTAGAACATACGTA
GAGAGTAACTCGGCTTATCCACATCTGCTGTCCTTAGAAATTGTCCACAT
AATGCTACAGAACTGACTTCGTGCTTGCCCCGTAGCCGAGCATGTTGTAT
GTATCTAGACTAGATAGACTATGTATCTATGTATCTAGTCTATGTAGATA
TCTATGTATGTAGTCTACATCCCTAGACTAAGCTACGTCTGGCCTACAGA
GTAGATCTACTGACTAGCCTACGTTGTCGGGGCAACGGTCTAGTCTACAC
AACACCTCTGTTGGGACGTCAAGTCTGCACGACTTGAAGTAAGTGTAGTC
GATCGGCTGTCGGCTTATCTCTTGCGGTACGGTGTGCACCCCCCAAACTG
GCGCACGATGGGTGATACTGTACATTGCTCTCCTCATGCGTATGGTGGCA
CCCGCTCCTGCCTGGGTCTACTGCAGACGGTATAAACTGCTCGGTCATTT
TATCGTGTTCGGTTCAAGAAGTGATAAATGTGCCGACAACAGCATTGCAC
ACACTTACACACGAAAACAGCTACAATACGCACATAGACTAGTCTATATG
CACCACCATCAGCCAGAAGCAAAAGCCAATGTAACCGCCGGTACGGCTAT
TGCACAACAACTCCAACTTCAAGCGTACTCTGCCACCCAACGCCGTGCGG
TTTGTACATTTACAGGAGCCCCGCTTCCAACGGTTCTTTGCTAGCATGAC
CCCCAGCGCTGACATAAATTGGGTGTCCGGACCGACCGGTCCTCTCTCAC
GTTCTGAGATGAGACGCGCCCGAAAATCGAGAAACAAGAAGCGGGCAAAG
ATCCGCAAGCAAGAGCGACAACAGCAGCAGCACCAACAACAACAACACAC
CACGAAGGAAGTAGCGCCCCCGCTGCGCATGGACGAGTTGCCGTTGGTGC
CCAACACAGTCATTCTGCCTTCGCATTCCGACACCCGGGCTCTTACGGCG
TCACCGGTGGCAGAGCCAACGGCCGACAACTGCGGCACTCTCGAGGCAGC
CACTGGAGATGCAACAGCAGCAGCCGTGGCTGCTGATTTGGTCGCGACAA
GAGGAGAGCGCCCTACGGTGGGCGAGGAGCAAGCGAACAGGGTTGGGGAC
GAATCGTTAAGAGAGGTGTCCCCTGCCGACTGTAAGCAGGTCTGGAGGAA
GCCAGCGTCCGTCTTGCCAGAAGATAAGCAAGCGGTGGAGGAGAGCAGGG
AGGGCAACGGGACCAGACCGACGACCACCCCCCAGGTAGACGGCGAGGCG
AAGGGGGCAAAGAAGCGGGATCAGCCCAAGGCTTCGATCTACATGGACAT
TACCGCCGAAGAATACGGCAAGGCTAAGGCAGACGCTGCGGTTTGGGCAC
GTCGAAAAGAATCGGCGTTAAAGATGGGGGACAAGGGCCCAAGTTGGTTC
GAGTCAGAAACTTTCCTCCACTACGGCCAGCCGCCGTTCCAGCACTCGTC
AACCGAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8704:1121..3030+

>mRNA_L-elsbetiae_contig8704.17731.1 ID=mRNA_L-elsbetiae_contig8704.17731.1|Name=mRNA_L-elsbetiae_contig8704.17731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig8704:1121..3030+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCCCAGCGCTGACATAAATTGGGTGTCCGGACCGACCGGTCCTCT
CTCACGTTCTGAGATGAGACGCGCCCGAAAATCGAGAAACAAGAAGCGGG
CAAAGATCCGCAAGCAAGAGCGACAACAGCAGCAGCACCAACAACAACAA
CACACCACGAAGGAAGTAGCGCCCCCGCTGCGCATGGACGAGTTGCCGTT
GGTGCCCAACACAGTCATTCTGCCTTCGCATTCCGACACCCGGGCTCTTA
CGGCGTCACCGGTGGCAGAGCCAACGGCCGACAACTGCGGCACTCTCGAG
GCAGCCACTGGAGATGCAACAGCAGCAGCCGTGGCTGCTGATTTGGTCGC
GACAAGAGGAGAGCGCCCTACGGTGGGCGAGGAGCAAGCGAACAGGGTTG
GGGACGAATCGTTAAGAGAGGTGTCCCCTGCCGACTGTAAGCAGGTCTGG
AGGAAGCCAGCGTCCGTCTTGCCAGAAGATAAGCAAGCGGTGGAGGAGAG
CAGGGAGGGCAACGGGACCAGACCGACGACCACCCCCCAGGTAGACGGCG
AGGCGAAGGGGGCAAAGAAGCGGGATCAGCCCAAGGCTTCGATCTACATG
GACATTACCGCCGAAGAATACGGCAAGGCTAAGGCAGACGCTGCGGTTTG
GGCACGTCGAAAAGAATCGGCGTTAAAGATGGGGGACAAGGGCCCAAGTT
GGTTCGAGTCAGAAACTTTCCTCCACTACGGCCAGCCGCCGTTCCAGCAC
TCGTCAACCGAAGCCATGACCCCCAGCGCTGACATAAATTGGGTGTCCGG
ACCGACCGGTCCTCTCTCACGTTCTGAGATGAGACGCGCCCGAAAATCGA
GAAACAAGAAGCGGGCAAAGATCCGCAAGCAAGAGCGACAACAGCAGCAG
CACCAACAACAACAACACACCACGAAGGAAGTAGCGCCCCCGCTGCGCAT
GGACGAGTTGCCGTTGGTGCCCAACACAGTCATTCTGCCTTCGCATTCCG
ACACCCGGGCTCTTACGGCGTCACCGGTGGCAGAGCCAACGGCCGACAAC
TGCGGCACTCTCGAGGCAGCCACTGGAGATGCAACAGCAGCAGCCGTGGC
TGCTGATTTGGTCGCGACAAGAGGAGAGCGCCCTACGGTGGGCGAGGAGC
AAGCGAACAGGGTTGGGGACGAATCGTTAAGAGAGGTGTCCCCTGCCGAC
TGTAAGCAGGTCTGGAGGAAGCCAGCGTCCGTCTTGCCAGAAGATAAGCA
AGCGGTGGAGGAGAGCAGGGAGGGCAACGGGACCAGACCGACGACCACCC
CCCAGGTAGACGGCGAGGCGAAGGGGGCAAAGAAGCGGGATCAGCCCAAG
GCTTCGATCTACATGGACATTACCGCCGAAGAATACGGCAAGGCTAAGGC
AGACGCTGCGGTTTGGGCACGTCGAAAAGAATCGGCGTTAAAGATGGGGG
ACAAGGGCCCAAGTTGGTTCGAGTCAGAAACTTTCCTCCACTACGGCCAG
CCGCCGTTCCAGCACTCGTCAACCGAAGCC
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