mRNA_L-elsbetiae_contig8686.17714.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8686.17714.1
Unique NamemRNA_L-elsbetiae_contig8686.17714.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Match: A0A7L4XQX3_SACJA (Carbohydrate sulfotranserase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A7L4XQX3_SACJA)

HSP 1 Score: 63.2 bits (152), Expect = 1.120e-9
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 HDAVIDTCKNTRAVVVKTIRLDAGVGEAG-DVAGLIVLHLVRDPRAVIHSQIKTFNVA 171
            H+ ++DTC N++AVVVK+IRL  G+G    D+ GL VLHLVRDPR V+ SQ + F ++
Sbjct:  137 HERLVDTCINSKAVVVKSIRLGVGLGGRDYDLGGLKVLHLVRDPRGVVRSQREHFGIS 194
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BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Match: A0A6H5KSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSJ9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.780e-9
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 HDAVIDTCKNTRAVVVKTIRLDAGVGEAG--DVAGLIVLHLVRDPRAVIHSQIK 156
            H A++D CK +RAV VK IRL  GVG+A   D +G+ +L LVRDPRAV+ SQ++
Sbjct:   82 HQALMDACKESRAVAVKAIRLLDGVGDASKYDTSGVNILQLVRDPRAVVRSQLR 135
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BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Match: D8LIC4_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.900e-9
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 HDAVIDTCKNTRAVVVKTIRLDAGVGEAG--DVAGLIVLHLVRDPRAVIHSQIK 156
            H A++D CK +RAV +KTIRL  GVG+A   D +G+ +L LVRDPRAV+ SQ++
Sbjct:   98 HQALMDACKESRAVAIKTIRLLDGVGDAAKYDTSGVNILQLVRDPRAVVRSQLR 151
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BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Match: A0A6G6CDI6_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDI6_SACJA)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-8
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 HDAVIDTCKNTRAVVVKTIRLDAGVGEAG-DVAGLIVLHLVRDPRAVIHSQ 150
            H+ +I+TC   RAV VK+IRL  G+G    DV+GL VLHLVRDPRAV+ SQ
Sbjct:   57 HEQLIETCNKRRAVAVKSIRLTEGLGGKDYDVSGLQVLHLVRDPRAVVRSQ 107
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BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Match: A0A6H5JR69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR69_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-7
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 HDAVIDTCKNTRAVVVKTIRLDAGV-GEAGDVAGLIVLHLVRDPRAVIHSQIKTFN 165
            H+ +++ CK++RAVVVK+IRL  G+ G+  D +GL VL LVRDPR V++SQ+  +N
Sbjct:  210 HETIMEACKSSRAVVVKSIRLYDGLNGQDYDTSGLHVLLLVRDPRGVVNSQMGLWN 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8686.17714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7L4XQX3_SACJA1.120e-953.45Carbohydrate sulfotranserase n=2 Tax=Saccharina ja... [more]
A0A6H5KSJ9_9PHAE1.780e-955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIC4_ECTSI2.900e-955.56Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6G6CDI6_SACJA1.270e-860.78Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A6H5JR69_9PHAE1.680e-751.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8686contigL-elsbetiae_contig8686:6869..7518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816948.6577513-CDS-L-elsbetiae_contig8686:6868..69031622816948.6577513-CDS-L-elsbetiae_contig8686:6868..6903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8686 6869..6903 +
1691683934.0112638-CDS-L-elsbetiae_contig8686:6868..69031691683934.0112638-CDS-L-elsbetiae_contig8686:6868..6903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8686 6869..6903 +
1622816948.6775177-CDS-L-elsbetiae_contig8686:7289..75181622816948.6775177-CDS-L-elsbetiae_contig8686:7289..7518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8686 7290..7518 +
1691683934.0220826-CDS-L-elsbetiae_contig8686:7289..75181691683934.0220826-CDS-L-elsbetiae_contig8686:7289..7518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8686 7290..7518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8686.17714.1prot_L-elsbetiae_contig8686.17714.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8686 6869..7518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8686.17714.1

>prot_L-elsbetiae_contig8686.17714.1 ID=prot_L-elsbetiae_contig8686.17714.1|Name=mRNA_L-elsbetiae_contig8686.17714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
HDAVIDTCKNTRAVVVKTIRLDAGVGEAGDVAGLIVLHLVRDPRAVIHSQ
IKTFNVAHKYRRYFSGPPQQPAEEDAAGLQPSTNATQV
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mRNA from alignment at L-elsbetiae_contig8686:6869..7518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8686.17714.1 ID=mRNA_L-elsbetiae_contig8686.17714.1|Name=mRNA_L-elsbetiae_contig8686.17714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig8686:6869..7518+ (Laminarionema elsbetiae ELsaHSoW15)
CACGATGCAGTGATCGACACGTGCAAGAACACCAGGTATCTACACCAGCA
ACGCTGCCCTTTCGTCCCTGCGGCTGAAGAGGTCTCGAAAGAAAAACACG
GAAGAACAAAACTCACAATATTAAAAAGTGTAGAAGTAGATGTGCATTAT
GTGCAGTTTTACTGATGGAAGATGTTTCAGGCTCTCTCTTTGTCTCCTCT
TCCCTCTCTCAGTAACTACCGGAGAGCTGGCTACCTCCCCGCTGACGCGC
ACCCATGCTACCCGGGCGACGGTGGAGTGCAACCCAAAGGATATCCCCAT
TCACTATAACCACAGGCGAGACACCCCGGTATCCGATGTACGCCAGCACC
GCATCATCGAGCTCTCCGCCGCAATCTCCGCGTCCCCTGTTGTTCTTCGT
CGTCCCTCCCTGATCGGACAGAGCGGTGGTGGTCAAGACAATCCGGCTGG
ACGCGGGTGTTGGCGAGGCAGGAGACGTAGCCGGCCTTATCGTGCTCCAC
CTCGTGCGAGACCCTCGCGCGGTGATTCATTCCCAGATCAAGACTTTCAA
CGTCGCCCACAAATACCGTCGGTACTTCAGCGGTCCGCCGCAGCAACCAG
CGGAGGAGGACGCGGCGGGACTGCAGCCCAGCACCAACGCGACCCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8686:6869..7518+

>mRNA_L-elsbetiae_contig8686.17714.1 ID=mRNA_L-elsbetiae_contig8686.17714.1|Name=mRNA_L-elsbetiae_contig8686.17714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig8686:6869..7518+ (Laminarionema elsbetiae ELsaHSoW15)
CACGATGCAGTGATCGACACGTGCAAGAACACCAGCACGATGCAGTGATC
GACACGTGCAAGAACACCAGAGCGGTGGTGGTCAAGACAATCCGGCTGGA
CGCGGGTGTTGGCGAGGCAGGAGACGTAGCCGGCCTTATCGTGCTCCACC
TCGTGCGAGACCCTCGCGCGGTGATTCATTCCCAGATCAAGACTTTCAAC
GTCGCCCACAAATACCGTCGGTACTTCAGCGGTCCGCCGCAGCAACCAGC
GGAGGAGGACGCGGCGGGACTGCAGCCCAGCACCAACGCGACCCAGGTGA
GCGGTGGTGGTCAAGACAATCCGGCTGGACGCGGGTGTTGGCGAGGCAGG
AGACGTAGCCGGCCTTATCGTGCTCCACCTCGTGCGAGACCCTCGCGCGG
TGATTCATTCCCAGATCAAGACTTTCAACGTCGCCCACAAATACCGTCGG
TACTTCAGCGGTCCGCCGCAGCAACCAGCGGAGGAGGACGCGGCGGGACT
GCAGCCCAGCACCAACGCGACCCAGGTG
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