mRNA_L-elsbetiae_contig8672.17705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8672.17705.1
Unique NamemRNA_L-elsbetiae_contig8672.17705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8672.17705.1 vs. uniprot
Match: A0A6H5JZN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN3_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.970e-38
Identity = 124/283 (43.82%), Postives = 137/283 (48.41%), Query Frame = 1 
Query:  130 VVPRRSEWRPSEAHKTSATSVARKEVQGAQLKAGAAPRARVAARAVATDGTDKARSPGLRRRELLGGAEDVQSQVQAQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVVSLSATTRFRARRELQRLAAAGNAEAIEALRVSGSLSSPSFASSSEPDGAXXXXXXXXXPVEGSGGG------------FTPLTVLPVLLALVGAGYCVVNDLAPREWLWRIGGGGGXXXXXAGPGDSAGAEGRDAQGKEQEGEEDASSLSPLLRTLSRVAAFVPVGS 942
            VV  RS WRPSEAHKTSAT  AR E Q A + AG A   R  A A A   T+K++SPGLRRR LL GA+DV  +    L                                  SVVS SAT+RFRARREL+RLAA+GN +A+EALR    L SP+ +S                PV G GGG             TPLTVLPVLLALVGAGYC VNDL PRE  W                                      SLSPLLRTLSRV AFVPV S
Sbjct:   81 VVAPRSSWRPSEAHKTSATRRARSEAQQANIMAGTAVAPRTPATASAAGTTNKSKSPGLRRRGLLDGADDVPWKSFPSLVSGASESSARTAKGGAAAAGEAPAL---------SVVSRSATSRFRARRELERLAASGNEDAVEALR---DLDSPTASS---------------PPVSGEGGGAEXXXXXXXXSGLTPLTVLPVLLALVGAGYCAVNDLIPRELSWA----------------GXXXXXXXXXXXXXXXXXXXXSLSPLLRTLSRVGAFVPVAS 320
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8672.17705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZN3_9PHAE1.970e-3843.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8672contigL-elsbetiae_contig8672:3050..5224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1010
Cds size1008
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8672.17705.1prot_L-elsbetiae_contig8672.17705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8672 3051..5224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816948.063743-CDS-L-elsbetiae_contig8672:3050..35341622816948.063743-CDS-L-elsbetiae_contig8672:3050..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 3051..3534 -
1691683933.6215556-CDS-L-elsbetiae_contig8672:3050..35341691683933.6215556-CDS-L-elsbetiae_contig8672:3050..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 3051..3534 -
1622816948.077406-CDS-L-elsbetiae_contig8672:4249..45691622816948.077406-CDS-L-elsbetiae_contig8672:4249..4569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 4250..4569 -
1691683933.63234-CDS-L-elsbetiae_contig8672:4249..45691691683933.63234-CDS-L-elsbetiae_contig8672:4249..4569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 4250..4569 -
1622816948.0904999-CDS-L-elsbetiae_contig8672:5020..52241622816948.0904999-CDS-L-elsbetiae_contig8672:5020..5224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 5021..5224 -
1691683933.6469917-CDS-L-elsbetiae_contig8672:5020..52241691683933.6469917-CDS-L-elsbetiae_contig8672:5020..5224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8672 5021..5224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8672.17705.1

>prot_L-elsbetiae_contig8672.17705.1 ID=prot_L-elsbetiae_contig8672.17705.1|Name=mRNA_L-elsbetiae_contig8672.17705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
KGNKGASCSTAVPPLSSAAISTENVAAAPAAPAGTPALDASRVVVPRRSE
WRPSEAHKTSATSVARKEVQGAQLKAGAAPRARVAARAVATDGTDKARSP
GLRRRELLGGAEDVQSQVQAQLAAASAAPLPETAATTKAAAAAVAGAGGG
GVGPPPSVVSLSATTRFRARRELQRLAAAGNAEAIEALRVSGSLSSPSFA
SSSEPDGASGGGGGGGGPVEGSGGGFTPLTVLPVLLALVGAGYCVVNDLA
PREWLWRIGGGGGGGGGAAGPGDSAGAEGRDAQGKEQEGEEDASSLSPLL
RTLSRVAAFVPVGSSPSPSSSPSSSLSSSSSADPTA
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mRNA from alignment at L-elsbetiae_contig8672:3050..5224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8672.17705.1 ID=mRNA_L-elsbetiae_contig8672.17705.1|Name=mRNA_L-elsbetiae_contig8672.17705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2175bp|location=Sequence derived from alignment at L-elsbetiae_contig8672:3050..5224- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTAACAAGGGAGCTTCGTGCAGCACAGCAGTTCCGCCGCTTTCCTC
CGCCGCGATCAGCACCGAAAATGTAGCAGCAGCACCGGCAGCACCAGCAG
GAACACCAGCATTGGATGCAAGCCGTGTTGTGGTGCCAAGACGGTCGGAG
TGGAGGCCCAGCGAAGCACACAAAACATCCGCCACCTCGGTAGCGCGGAA
GGAGGTACGGACGTTCATATTCTACAGCTCTTGGAAGAGGGTCGGAATCT
CAGCTGCATTCCTCTTACACCGATACACCAGGCTCTCCTCCTTGCACTCA
TGTGAAAACCATAAAAAGGGGGTGAAATAGTGTGGGTATTGTACACGCAC
TGCCGTCTGTTGCCGAAAGCTGGTGCGTGGGCTGGCGAGGCCCGAAATAA
ATGCGCACGCAAATCGCCCACACGGCAAATAAAATATCACCACTTGCTGC
GTTGGGCGGATGAAATATCTGCTCGCTGTACAGTACTTGTAGTATACCGC
AATCCCTTGCGACGCATACCTGTAAGTCGACGAAATGCGTACATAAATAG
GTAGCCGGGTGATTTAAAGCATGCTTGGCCGCCTTGCCAAAATTCACCCA
CCACCATATGTACATGCCGATGCCCGTGACGACCGTGCGCCCCCCCCCCC
CGCAGGTTCAGGGCGCCCAGCTCAAGGCCGGGGCGGCGCCTCGAGCTCGA
GTTGCTGCACGAGCGGTCGCTACCGACGGAACGGACAAGGCTCGCTCCCC
CGGACTGCGTCGGAGGGAGCTGCTGGGCGGAGCCGAGGACGTGCAGTCGC
AGGTGCAGGCACAGCTCGCGGCGGCTTCGGCCGCTCCTTTGCCAGAAACA
GCCGCGACAACGAAGGCAGCAGCAGCAGCTGTAGCGGGGGCGGGGGGCGG
GGGAGTGGGTCCGCCGCCTTCCGTGGTGTCGTTGTCGGCCACCACCAGGT
TTAGAGCTAGGCGGGAGCTTCAGAGGTGGGTGTTTTTGTAGGATGTGGTC
GCCGGGTTTTCCTGCTGTAAGCGGAGTAGAGGGGGGGGGGGGTTCATAGA
GGGGAGTTGCTGCGATCAGCAGGATGCCCCCCGCCTGCTAAACGTACATA
GAAGTATGAGAAGTGCGCCCAGTACCTGAAAAATCAATTGAGGACTCTGA
AAATTGAAAGATGTGCCATAAAAAATCTCCGACATGGTAGTGTTGTAGTG
TTGCTGTTTGGCCGCGGGAAGACGCGGCTGCTCGAACGTACGGTGCCCGA
CCTCGCGTTTTTTATGTTGCGATTCCTGTCGGCGGGTCTTATCTGTTGCC
CTGTTCTGTCCTATTCTGTACACCAGTTGACGCGTGCTTGCGTCTCCGAT
GCGTCAAAATTTTGCGGTCGTTGGCTGGCTGGGCTGGGCTGCTTTCGCAA
ATGCGGCTGTAGCCAAACCCGGAAAAGCTTTCAGGATGTGCGTGGTAGCT
CGCGCGGCCTGACTTCTCCCGATTGTGCTTGTCCGCCTCCTCCTGGATTG
ATAGCTCAAGCGCGTCTGACTGACGCCACCAAGCCCCGACCCCGCCATGG
GCTTGCTCTTCTCTGCTGCTGTCAACTTGAGATGTGGTCACGGCTTTCCG
CCGGCGTTGGAATCCACCTTAATTACTTCAACCCTTTCTCTACCCCCCCC
CCTCCCGCGGCAAACGCCCCTTCGCACGCGCTGCGTCCAGACTCGCGGCC
GCCGGAAACGCTGAAGCTATCGAAGCGTTGCGCGTCTCGGGTTCGTTGTC
TTCGCCTTCTTTCGCATCGTCTTCGGAGCCCGACGGCGCGAGTGGTGGTG
GTGGTGGTGGTGGTGGCCCCGTAGAAGGCAGCGGCGGCGGTTTCACGCCG
CTGACGGTCCTCCCCGTGCTTCTTGCGCTTGTCGGCGCCGGCTACTGCGT
CGTCAACGACCTGGCGCCGCGGGAATGGCTGTGGCGGATAGGCGGCGGGG
GCGGCGGCGGCGGGGGCGCAGCTGGGCCCGGAGATTCCGCGGGAGCCGAG
GGCCGCGACGCCCAAGGAAAAGAGCAGGAAGGAGAAGAAGACGCATCGTC
GCTGTCGCCTCTGCTGAGAACTCTCTCTCGTGTTGCGGCGTTTGTTCCCG
TAGGTTCTTCTCCCTCTCCTTCTTCTTCTCCTTCTTCTTCTCTGTCTTCT
TCGTCTTCCGCCGATCCGACCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8672:3050..5224-

>mRNA_L-elsbetiae_contig8672.17705.1 ID=mRNA_L-elsbetiae_contig8672.17705.1|Name=mRNA_L-elsbetiae_contig8672.17705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig8672:3050..5224- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTAACAAGGGAGCTTCGTGCAGCACAGCAGTTCCGCCGCTTTCCTC
CGCCGCGATCAGCACCGAAAATGTAGCAGCAGCACCGGCAGCACCAGCAG
GAACACCAGCATTGGATGCAAGCCGTGTTGTGGTGCCAAGACGGTCGGAG
TGGAGGCCCAGCGAAGCACACAAAACATCCGCCACCTCGGTAGCGCGGAA
GGAGAAGGGTAACAAGGGAGCTTCGTGCAGCACAGCAGTTCCGCCGCTTT
CCTCCGCCGCGATCAGCACCGAAAATGTAGCAGCAGCACCGGCAGCACCA
GCAGGAACACCAGCATTGGATGCAAGCCGTGTTGTGGTGCCAAGACGGTC
GGAGTGGAGGCCCAGCGAAGCACACAAAACATCCGCCACCTCGGTAGCGC
GGAAGGAGGTTCAGGGCGCCCAGCTCAAGGCCGGGGCGGCGCCTCGAGCT
CGAGTTGCTGCACGAGCGGTCGCTACCGACGGAACGGACAAGGCTCGCTC
CCCCGGACTGCGTCGGAGGGAGCTGCTGGGCGGAGCCGAGGACGTGCAGT
CGCAGGTGCAGGCACAGCTCGCGGCGGCTTCGGCCGCTCCTTTGCCAGAA
ACAGCCGCGACAACGAAGGCAGCAGCAGCAGCTGTAGCGGGGGCGGGGGG
CGGGGGAGTGGGTCCGCCGCCTTCCGTGGTGTCGTTGTCGGCCACCACCA
GGTTTAGAGCTAGGCGGGAGCTTCAGAGGTTCAGGGCGCCCAGCTCAAGG
CCGGGGCGGCGCCTCGAGCTCGAGTTGCTGCACGAGCGGTCGCTACCGAC
GGAACGGACAAGGCTCGCTCCCCCGGACTGCGTCGGAGGGAGCTGCTGGG
CGGAGCCGAGGACGTGCAGTCGCAGGTGCAGGCACAGCTCGCGGCGGCTT
CGGCCGCTCCTTTGCCAGAAACAGCCGCGACAACGAAGGCAGCAGCAGCA
GCTGTAGCGGGGGCGGGGGGCGGGGGAGTGGGTCCGCCGCCTTCCGTGGT
GTCGTTGTCGGCCACCACCAGGTTTAGAGCTAGGCGGGAGCTTCAGAGAC
TCGCGGCCGCCGGAAACGCTGAAGCTATCGAAGCGTTGCGCGTCTCGGGT
TCGTTGTCTTCGCCTTCTTTCGCATCGTCTTCGGAGCCCGACGGCGCGAG
TGGTGGTGGTGGTGGTGGTGGTGGCCCCGTAGAAGGCAGCGGCGGCGGTT
TCACGCCGCTGACGGTCCTCCCCGTGCTTCTTGCGCTTGTCGGCGCCGGC
TACTGCGTCGTCAACGACCTGGCGCCGCGGGAATGGCTGTGGCGGATAGG
CGGCGGGGGCGGCGGCGGCGGGGGCGCAGCTGGGCCCGGAGATTCCGCGG
GAGCCGAGGGCCGCGACGCCCAAGGAAAAGAGCAGGAAGGAGAAGAAGAC
GCATCGTCGCTGTCGCCTCTGCTGAGAACTCTCTCTCGTGTTGCGGCGTT
TGTTCCCGTAGGTTCTTCTCCCTCTCCTTCTTCTTCTCCTTCTTCTTCTC
TGTCTTCTTCGTCTTCCGCCGATCCGACCGCCACTCGCGGCCGCCGGAAA
CGCTGAAGCTATCGAAGCGTTGCGCGTCTCGGGTTCGTTGTCTTCGCCTT
CTTTCGCATCGTCTTCGGAGCCCGACGGCGCGAGTGGTGGTGGTGGTGGT
GGTGGTGGCCCCGTAGAAGGCAGCGGCGGCGGTTTCACGCCGCTGACGGT
CCTCCCCGTGCTTCTTGCGCTTGTCGGCGCCGGCTACTGCGTCGTCAACG
ACCTGGCGCCGCGGGAATGGCTGTGGCGGATAGGCGGCGGGGGCGGCGGC
GGCGGGGGCGCAGCTGGGCCCGGAGATTCCGCGGGAGCCGAGGGCCGCGA
CGCCCAAGGAAAAGAGCAGGAAGGAGAAGAAGACGCATCGTCGCTGTCGC
CTCTGCTGAGAACTCTCTCTCGTGTTGCGGCGTTTGTTCCCGTAGGTTCT
TCTCCCTCTCCTTCTTCTTCTCCTTCTTCTTCTCTGTCTTCTTCGTCTTC
CGCCGATCCGACCGCC
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