mRNA_L-elsbetiae_contig8648.17684.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8648.17684.1
Unique NamemRNA_L-elsbetiae_contig8648.17684.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8648.17684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8648contigL-elsbetiae_contig8648:2427..2822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.528806-CDS-L-elsbetiae_contig8648:2426..28221622816946.528806-CDS-L-elsbetiae_contig8648:2426..2822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8648 2427..2822 +
1691683932.5546134-CDS-L-elsbetiae_contig8648:2426..28221691683932.5546134-CDS-L-elsbetiae_contig8648:2426..2822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8648 2427..2822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8648.17684.1prot_L-elsbetiae_contig8648.17684.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8648 2427..2822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8648.17684.1

>prot_L-elsbetiae_contig8648.17684.1 ID=prot_L-elsbetiae_contig8648.17684.1|Name=mRNA_L-elsbetiae_contig8648.17684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
GKFNGGGYSVALVVCYAVSAPTSVGYPICLSVGRGDMPGDAFGVDVPHRT
GGRRVVLRGSFPSHQGIGRELRGTIWDKERRSREYPWANDASTGSMVAFY
QGMLRRFPKTNKTHTHTHTHTQSLFVEGRAWR
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mRNA from alignment at L-elsbetiae_contig8648:2427..2822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8648.17684.1 ID=mRNA_L-elsbetiae_contig8648.17684.1|Name=mRNA_L-elsbetiae_contig8648.17684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig8648:2427..2822+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAATTCAATGGGGGTGGTTATTCCGTGGCTCTCGTTGTTTGTTACGC
CGTGTCTGCGCCGACTTCGGTTGGTTATCCCATATGTTTGTCCGTGGGTC
GGGGTGACATGCCAGGAGATGCTTTCGGGGTTGATGTTCCGCACCGCACA
GGGGGCAGAAGAGTTGTACTGCGGGGCAGTTTTCCGTCTCATCAGGGTAT
AGGTCGGGAGCTGCGGGGTACAATTTGGGACAAAGAAAGACGCAGCAGGG
AATACCCATGGGCGAACGACGCCAGCACCGGGTCAATGGTGGCGTTCTAC
CAGGGTATGTTGCGTCGTTTCCCAAAAACAAATAAAACACACACACACAC
ACACACACACACGCAATCGCTTTTCGTGGAGGGACGCGCCTGGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8648:2427..2822+

>mRNA_L-elsbetiae_contig8648.17684.1 ID=mRNA_L-elsbetiae_contig8648.17684.1|Name=mRNA_L-elsbetiae_contig8648.17684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig8648:2427..2822+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAATTCAATGGGGGTGGTTATTCCGTGGCTCTCGTTGTTTGTTACGC
CGTGTCTGCGCCGACTTCGGTTGGTTATCCCATATGTTTGTCCGTGGGTC
GGGGTGACATGCCAGGAGATGCTTTCGGGGTTGATGTTCCGCACCGCACA
GGGGGCAGAAGAGTTGTACTGCGGGGCAGTTTTCCGTCTCATCAGGGTAT
AGGTCGGGAGCTGCGGGGTACAATTTGGGACAAAGAAAGACGCAGCAGGG
AATACCCATGGGCGAACGACGCCAGCACCGGGTCAATGGTGGCGTTCTAC
CAGGGTATGTTGCGTCGTTTCCCAAAAACAAATAAAACACACACACACAC
ACACACACACACGCAATCGCTTTTCGTGGAGGGACGCGCCTGGAGAGGCA
AATTCAATGGGGGTGGTTATTCCGTGGCTCTCGTTGTTTGTTACGCCGTG
TCTGCGCCGACTTCGGTTGGTTATCCCATATGTTTGTCCGTGGGTCGGGG
TGACATGCCAGGAGATGCTTTCGGGGTTGATGTTCCGCACCGCACAGGGG
GCAGAAGAGTTGTACTGCGGGGCAGTTTTCCGTCTCATCAGGGTATAGGT
CGGGAGCTGCGGGGTACAATTTGGGACAAAGAAAGACGCAGCAGGGAATA
CCCATGGGCGAACGACGCCAGCACCGGGTCAATGGTGGCGTTCTACCAGG
GTATGTTGCGTCGTTTCCCAAAAACAAATAAAACACACACACACACACAC
ACACACACGCAATCGCTTTTCGTGGAGGGACGCGCCTGGAGA
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