mRNA_L-elsbetiae_contig8641.17677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8641.17677.1
Unique NamemRNA_L-elsbetiae_contig8641.17677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8641.17677.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:   62 MADVVSKRCGQPGCTKQPLYGVDGTNTGEFCSQH 163
            M DVVSKRCG PGCTK+P YG DG+   E C+QH
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQH 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8641.17677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI2.110e-667.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8641contigL-elsbetiae_contig8641:4407..7609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2612
Cds size1380
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8641.17677.1prot_L-elsbetiae_contig8641.17677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8641 5265..7200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.0629697-UTR-L-elsbetiae_contig8641:4406..52641622816946.0629697-UTR-L-elsbetiae_contig8641:4406..5264Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 4407..5264 -
1691683932.2300148-UTR-L-elsbetiae_contig8641:4406..52641691683932.2300148-UTR-L-elsbetiae_contig8641:4406..5264Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 4407..5264 -
1622816946.0985744-UTR-L-elsbetiae_contig8641:7200..72061622816946.0985744-UTR-L-elsbetiae_contig8641:7200..7206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 7201..7206 -
1691683932.267057-UTR-L-elsbetiae_contig8641:7200..72061691683932.267057-UTR-L-elsbetiae_contig8641:7200..7206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 7201..7206 -
1622816946.1116228-UTR-L-elsbetiae_contig8641:7241..76091622816946.1116228-UTR-L-elsbetiae_contig8641:7241..7609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 7242..7609 -
1691683932.2792623-UTR-L-elsbetiae_contig8641:7241..76091691683932.2792623-UTR-L-elsbetiae_contig8641:7241..7609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8641 7242..7609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.0771592-CDS-L-elsbetiae_contig8641:5264..52681622816946.0771592-CDS-L-elsbetiae_contig8641:5264..5268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 5265..5268 -
1691683932.2400014-CDS-L-elsbetiae_contig8641:5264..52681691683932.2400014-CDS-L-elsbetiae_contig8641:5264..5268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 5265..5268 -
1622816946.0874057-CDS-L-elsbetiae_contig8641:5824..72001622816946.0874057-CDS-L-elsbetiae_contig8641:5824..7200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 5825..7200 -
1691683932.2502232-CDS-L-elsbetiae_contig8641:5824..72001691683932.2502232-CDS-L-elsbetiae_contig8641:5824..7200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 5825..7200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8641.17677.1

>prot_L-elsbetiae_contig8641.17677.1 ID=prot_L-elsbetiae_contig8641.17677.1|Name=mRNA_L-elsbetiae_contig8641.17677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=460bp
MVNVHSKRCDQQGCTKTPSYGLDGSNKREFCFAHKKDGMVSMGSKRCGQQ
GCTTRPSYGVEGSSKSEFCSQHKIDGMVDVKNKKCGKQGCNKYALYGVKG
STKLEFCCEHKRGGMVNVRSKTCAHAGCTKRPSYAVDSGKTPEFCSQHKI
DGMVDIVSKRCGQLGCTKYPSYGLDGSSTPEFCAQHKRDGMVYITVKKRC
GQQGCTKLPSYGVEGSSKSEFCSVHKKGGMVDVRSKRCSQQGCTKHPSYG
MEGSSKSEFCCEHRKGGMVDIVSKRCGQLGCTKYPSYGLDGSSTSEFCSR
HKMDGMVNVKNKNKKRCGQQGCTKLPSYGVEGSSKSEFCSVHKKGGMVNV
RSKRCSQQGCTKHPSYGMEGSTKREFCCEHKKDGMIMIRRNSKRPSEGHG
MGRDTSEGDGPTVADDGTVRLAGTCRKRSCGSSTESVHQTPTVKAEPGVF
SIGRRGSWR*
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mRNA from alignment at L-elsbetiae_contig8641:4407..7609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8641.17677.1 ID=mRNA_L-elsbetiae_contig8641.17677.1|Name=mRNA_L-elsbetiae_contig8641.17677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3203bp|location=Sequence derived from alignment at L-elsbetiae_contig8641:4407..7609- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGCGACTCTCGTTGCTCTGCTGCTGGCTGTCTGACACACTGATCAA
AGATAGACGGGATGGCGGATGTCGTCAGCAAGAGGTGCGGCCAACCAGGC
TGCACCAAGCAGCCGTTGTATGGCGTGGACGGCACCAACACGGGGGAGTT
TTGCTCTCAACACAAGGATGGGATGGCATGTGCAGTGACAACAGTGAGCT
ACAGGTGCGACCAGCAGGGTTGTACCAAGCGGTCGTCGTATGGCGTGGAC
GGTAGCACAAATGCGGAATTCTGCTCAGTGCACAAGAAGGGTGGGATGGT
GAACGTGAGGAGCAAGAGGTGCAGCCAACAGGGTTGTACCAAGCATCCAT
CGTACGGCATGGAAGGCAGCAGCAAATCAGAGTTCTGCTGTGAACACAGG
AAGGACGGGATGGTGAATGTCCACAGCAAGAGGTGCGACCAACAAGGTTG
CACCAAGACCCCGTCGTATGGTTTAGACGGCAGCAACAAGCGGGAGTTTT
GCTTTGCGCACAAGAAGGACGGGATGGTGAGCATGGGGAGCAAGAGGTGC
GGCCAACAGGGTTGCACCACGCGGCCGTCGTATGGCGTGGAAGGCAGCAG
CAAATCGGAATTCTGCTCTCAACACAAGATTGACGGGATGGTGGACGTGA
AGAATAAGAAGTGCGGCAAACAAGGTTGCAACAAGTACGCGTTGTACGGC
GTGAAAGGCAGCACCAAATTGGAGTTCTGTTGTGAACACAAGAGGGGCGG
GATGGTGAACGTCCGCAGCAAGACCTGTGCCCACGCCGGTTGCACCAAGC
GGCCGTCATACGCCGTGGATAGTGGCAAAACGCCGGAATTCTGCTCTCAA
CACAAGATTGATGGGATGGTGGATATCGTCAGCAAGCGATGCGGCCAGCT
AGGTTGCACGAAGTACCCGTCGTACGGCTTGGACGGTAGCAGCACACCAG
AGTTCTGCGCTCAACACAAGAGAGACGGGATGGTATACATCACGGTCAAG
AAGAGATGCGGCCAACAAGGATGCACCAAGCTGCCGTCGTACGGCGTGGA
AGGCAGCAGCAAATCGGAGTTCTGCTCAGTGCACAAGAAGGGTGGGATGG
TGGACGTGAGGAGCAAGAGGTGCAGCCAACAGGGTTGTACCAAGCATCCA
TCGTACGGCATGGAAGGCAGCAGCAAATCAGAGTTCTGCTGTGAACACAG
GAAGGGCGGGATGGTGGATATCGTCAGCAAGCGATGCGGCCAGCTAGGTT
GCACGAAGTACCCGTCGTACGGCTTGGACGGTAGCAGCACATCGGAGTTC
TGCTCTCGACACAAGATGGACGGGATGGTGAATGTGAAGAACAAGAACAA
GAAGAGATGCGGCCAACAAGGTTGCACCAAGCTGCCGTCGTACGGCGTGG
AAGGCAGCAGCAAATCGGAGTTCTGCTCAGTGCACAAGAAGGGTGGGATG
GTGAACGTCAGGAGCAAGAGGTGCAGCCAACAGGGTTGTACCAAGCATCC
ATCGTACGGCATGGAAGGCAGCACCAAAAGAGAGTTCTGCTGTGAACATA
AGAAGGACGGAATGATCATGATACGCCGAAATTCGAAGAGACCATCGGAA
GGCCATGGTATGGGTAGGGACACGTCTGAAGGCGATGGCCCGACGGTGGC
TGATGATGGCACGGTACGCCTGGCTGGTACCTGTCGAAAGCGGAGTTGCG
GCTCTTCTACTGAATCTGTCCACCAGACCCCTACTGTGAAAGCAGAACCT
GGCGTATTTTCTATCGGGCGCAGAGGAAGCTGGAGGTGAGAAGCAAGTTT
ACTGCTGCTGCTCTATGCATTGTCTACTGCAAGGAGTGCGACCTCACGCG
CACTAGAGGAAGCAGCTTCGTCAGCCGGGTGTGCTCTCGCTGGACAATAT
CGCTGTGGTTGGTTTCTGTCCGATGTGGTTTCAATAGTAAATAGTCTGCC
GATACAACGAACACGCATGTAACTTCGAGAGTCCAATGGCCAGAACACAG
GCTCCGCACGCGATATTACGCTTGATGGAAACCGCCCCGAACAGAGATGA
ATCGTTCATCGCATCAAGTTTGGAATGAGTTAGGCACAAGACTCAAGCGG
CAGCGCCGCTGATGCATTTCTGAACCAAAACGTAACTCACGTTTGAAGCT
AAAAATCAGGAAATCGAAGACGAAACCTCTCCACATTGGAGGCGGGACTC
CGTGGAATTTATCAACTCGTATGCCGTATTTTGTATTTCACGGCTACATA
CCACTGTGGCTTGACTACACCGCAAAGGTTCTTCTCACTACGTATCTTGC
TTCCGCGTATTGCTTGGTTTCTTACATTTGTGTCTGTCCAGGTAACCTAC
GCCGTGGGGGGAAGCTACAGCACAGGGGGCAGGTAACGCGATTAAAATGT
GCGTGGATTGGGGACGACAGTAGCTTCCGGGTTTAGCTCCTGCTTTAAGC
GTGAGCGGTGCTTTTTAAGGCCGGGAATGCTGCAGGTTTCGTGCAGTGCC
ATTCACCCCCCACGTGGTTGCATCATGGGATTGGCAGTCCACTGCGATTT
TGGCGTTGCTTGGTGGTCGGTTGTTCTGCCCGGCTCTGGTACCAACAGCA
TCGTGCATCTTTCGTCTGTCGGTAGAGATAGGTGCCATGCTCCACAAGTT
AAAAAACAGCATTTACAGGCAATTGATTGGTCGATAAACTGAGTCTGAGA
CCCATGCAAGTCTCATCTTTGGCAATCACGGATACAGAGGGCCTGTGTGT
ATGTAGCACGGCAACCCAGGTGTTGTAAGGGTTGTTGTTGTTGTTGATGA
TTCTTACGTTTGCTCTCAAGTCCAAAAACATCATTGGGGGCCCGTGGTCA
CATAACGTAGGGGTGCGCGCTTGTGGATAACAATGTCTAGCTTTCTGGGG
CTTCTCTCAAGCTGTCGATGAGGGTGGCCTACCTGTCGGCGGCAAATGTC
GACTTCGAGCCTCCCCCTATTTAATAGCACGATGGCATGTGAAAAAATGG
CATTTTGGAGTGGGATATTTTGATTGTGTTACTCTGTTGTGCCTCATATT
TACTTCACCCCCTACCTTCCTCGCTTTCTTACACACCTCTGTCGACTTGG
AGGTGTGCGTGCGTACAGTTCGTTCGAAACGCTCGTCCCTTTGGGCATGA
AATCGTTAATCGTATCCCCGCCGTTTTGGTGTTTTGGTGAGAGGGGGAAC
GTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8641:4407..7609-

>mRNA_L-elsbetiae_contig8641.17677.1 ID=mRNA_L-elsbetiae_contig8641.17677.1|Name=mRNA_L-elsbetiae_contig8641.17677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2760bp|location=Sequence derived from alignment at L-elsbetiae_contig8641:4407..7609- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCCACAGCAAGAGGTGCGACCAACAAGGTTGCACCAAGAC
CCCGTCGTATGGTTTAGACGGCAGCAACAAGCGGGAGTTTTGCTTTGCGC
ACAAGAAGGACGGGATGGTGAGCATGGGGAGCAAGAGGTGCGGCCAACAG
GGTTGCACCACGCGGCCGTCGTATGGCGTGGAAGGCAGCAGCAAATCGGA
ATTCTGCTCTCAACACAAGATTGACGGGATGGTGGACGTGAAGAATAAGA
AGTGCGGCAAACAAGGTTGCAACAAGTACGCGTTGTACGGCGTGAAAGGC
AGCACCAAATTGGAGTTCTGTTGTGAACACAAGAGGGGCGGGATGGTGAA
CGTCCGCAGCAAGACCTGTGCCCACGCCGGTTGCACCAAGCGGCCGTCAT
ACGCCGTGGATAGTGGCAAAACGCCGGAATTCTGCTCTCAACACAAGATT
GATGGGATGGTGGATATCGTCAGCAAGCGATGCGGCCAGCTAGGTTGCAC
GAAGTACCCGTCGTACGGCTTGGACGGTAGCAGCACACCAGAGTTCTGCG
CTCAACACAAGAGAGACGGGATGGTATACATCACGGTCAAGAAGAGATGC
GGCCAACAAGGATGCACCAAGCTGCCGTCGTACGGCGTGGAAGGCAGCAG
CAAATCGGAGTTCTGCTCAGTGCACAAGAAGGGTGGGATGGTGGACGTGA
GGAGCAAGAGGTGCAGCCAACAGGGTTGTACCAAGCATCCATCGTACGGC
ATGGAAGGCAGCAGCAAATCAGAGTTCTGCTGTGAACACAGGAAGGGCGG
GATGGTGGATATCGTCAGCAAGCGATGCGGCCAGCTAGGTTGCACGAAGT
ACCCGTCGTACGGCTTGGACGGTAGCAGCACATCGGAGTTCTGCTCTCGA
CACAAGATGGACGGGATGGTGAATGTGAAGAACAAGAACAAGAAGAGATG
CGGCCAACAAGGTTGCACCAAGCTGCCGTCGTACGGCGTGGAAGGCAGCA
GCAAATCGGAGTTCTGCTCAGTGCACAAGAAGGGTGGGATGGTGAACGTC
AGGAGCAAGAGGTGCAGCCAACAGGGTTGTACCAAGCATCCATCGTACGG
CATGGAAGGCAGCACCAAAAGAGAGTTCTGCTGTGAACATAAGAAGGACG
GAATGATCATGATACGCCGAAATTCGAAGAGACCATCGGAAGGCCATGGT
ATGGGTAGGGACACGTCTGAAGGCGATGGCCCGACGGTGGCTGATGATGG
CACGGTACGCCTGGCTGGTACCTGTCGAAAGCGGAGTTGCGGCTCTTCTA
CTGAATCTGTCCACCAGACCCCTACTGTGAAAGCAGAACCTGGCGTATTT
TCTATCGGGCGCAGAGGAAGCTGGAGATGGTGAATGTCCACAGCAAGAGG
TGCGACCAACAAGGTTGCACCAAGACCCCGTCGTATGGTTTAGACGGCAG
CAACAAGCGGGAGTTTTGCTTTGCGCACAAGAAGGACGGGATGGTGAGCA
TGGGGAGCAAGAGGTGCGGCCAACAGGGTTGCACCACGCGGCCGTCGTAT
GGCGTGGAAGGCAGCAGCAAATCGGAATTCTGCTCTCAACACAAGATTGA
CGGGATGGTGGACGTGAAGAATAAGAAGTGCGGCAAACAAGGTTGCAACA
AGTACGCGTTGTACGGCGTGAAAGGCAGCACCAAATTGGAGTTCTGTTGT
GAACACAAGAGGGGCGGGATGGTGAACGTCCGCAGCAAGACCTGTGCCCA
CGCCGGTTGCACCAAGCGGCCGTCATACGCCGTGGATAGTGGCAAAACGC
CGGAATTCTGCTCTCAACACAAGATTGATGGGATGGTGGATATCGTCAGC
AAGCGATGCGGCCAGCTAGGTTGCACGAAGTACCCGTCGTACGGCTTGGA
CGGTAGCAGCACACCAGAGTTCTGCGCTCAACACAAGAGAGACGGGATGG
TATACATCACGGTCAAGAAGAGATGCGGCCAACAAGGATGCACCAAGCTG
CCGTCGTACGGCGTGGAAGGCAGCAGCAAATCGGAGTTCTGCTCAGTGCA
CAAGAAGGGTGGGATGGTGGACGTGAGGAGCAAGAGGTGCAGCCAACAGG
GTTGTACCAAGCATCCATCGTACGGCATGGAAGGCAGCAGCAAATCAGAG
TTCTGCTGTGAACACAGGAAGGGCGGGATGGTGGATATCGTCAGCAAGCG
ATGCGGCCAGCTAGGTTGCACGAAGTACCCGTCGTACGGCTTGGACGGTA
GCAGCACATCGGAGTTCTGCTCTCGACACAAGATGGACGGGATGGTGAAT
GTGAAGAACAAGAACAAGAAGAGATGCGGCCAACAAGGTTGCACCAAGCT
GCCGTCGTACGGCGTGGAAGGCAGCAGCAAATCGGAGTTCTGCTCAGTGC
ACAAGAAGGGTGGGATGGTGAACGTCAGGAGCAAGAGGTGCAGCCAACAG
GGTTGTACCAAGCATCCATCGTACGGCATGGAAGGCAGCACCAAAAGAGA
GTTCTGCTGTGAACATAAGAAGGACGGAATGATCATGATACGCCGAAATT
CGAAGAGACCATCGGAAGGCCATGGTATGGGTAGGGACACGTCTGAAGGC
GATGGCCCGACGGTGGCTGATGATGGCACGGTACGCCTGGCTGGTACCTG
TCGAAAGCGGAGTTGCGGCTCTTCTACTGAATCTGTCCACCAGACCCCTA
CTGTGAAAGCAGAACCTGGCGTATTTTCTATCGGGCGCAGAGGAAGCTGG
AGGTAAGTAA
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