mRNA_L-elsbetiae_contig8631.17669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8631.17669.1
Unique NamemRNA_L-elsbetiae_contig8631.17669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8631.17669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8631contigL-elsbetiae_contig8631:6634..7661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8631.17669.1prot_L-elsbetiae_contig8631.17669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8631 6802..7661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816945.1023102-UTR-L-elsbetiae_contig8631:6633..68011622816945.1023102-UTR-L-elsbetiae_contig8631:6633..6801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8631 6634..6801 +
1691683931.4898324-UTR-L-elsbetiae_contig8631:6633..68011691683931.4898324-UTR-L-elsbetiae_contig8631:6633..6801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8631 6634..6801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816945.1152644-CDS-L-elsbetiae_contig8631:6801..69651622816945.1152644-CDS-L-elsbetiae_contig8631:6801..6965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8631 6802..6965 +
1691683931.5033476-CDS-L-elsbetiae_contig8631:6801..69651691683931.5033476-CDS-L-elsbetiae_contig8631:6801..6965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8631 6802..6965 +
1622816945.129562-CDS-L-elsbetiae_contig8631:7561..76611622816945.129562-CDS-L-elsbetiae_contig8631:7561..7661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8631 7562..7661 +
1691683931.5119004-CDS-L-elsbetiae_contig8631:7561..76611691683931.5119004-CDS-L-elsbetiae_contig8631:7561..7661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8631 7562..7661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8631.17669.1

>prot_L-elsbetiae_contig8631.17669.1 ID=prot_L-elsbetiae_contig8631.17669.1|Name=mRNA_L-elsbetiae_contig8631.17669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MYIVLTNSVTPRAVTNSLNCGSSAVSGGISYYCLLKTRSSGDRGPWQRAQ
QWETGFCEGRGSCDGHNLEAHMRSPPRGDVRRLRERG*
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mRNA from alignment at L-elsbetiae_contig8631:6634..7661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8631.17669.1 ID=mRNA_L-elsbetiae_contig8631.17669.1|Name=mRNA_L-elsbetiae_contig8631.17669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1028bp|location=Sequence derived from alignment at L-elsbetiae_contig8631:6634..7661+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGACGGACTTGCATGCTGCAACATCTTCCCCCTGGTGGCGGTGTT
GCGACGTTCAGCACAGTGGCCTGTTCACGTTCTTCTTGGTGATGACGGTA
CAAACACTTGAGTTTCCAAGATACTCAAGTTTACGACAGGGCGTCAGAGG
GCACAATTGGTCCTATGTATGTACATAGTTTTGACCAATTCTGTAACGCC
ACGGGCCGTAACCAACAGTCTGAACTGCGGATCCTCAGCAGTATCTGGCG
GTATCAGCTACTACTGCTTGCTGAAGACCCGCAGTTCAGGAGATCGGGGT
CCGTGGCAGCGCGCACAGCAGTGGGAGACAGGGTGTGTCGGTCAATTTGC
GGAGATTCTCGGTCACTGCTACGACTCTCGATCTCTCCGCTCCAGCAGCA
GATCTGAGCGCGCCGTGAACTCTCCATGGTTAGCTCTATCTTGTAGTCTA
TCTATCTAGTGATTCAATGCCCGAAACTAACCAAGGCAGACCTTATTTGA
GCGCCCGCCGTTTTGGCTCCTTTGACTTGATTTTAGATAGGATAGATCAC
GATCATATGGTAGAGAGGTGTACCATAATTAGATACACTTTTGTCTACAG
GTGTTCTTGCTCACCTGCTGATACTGTCGGCAGTGAGAGCGATCCATCTG
GTTAGTCTGCCTTGCGTTTGCGACCCGCCGCCACGGCCGCTGCGTTTCTT
TCCTTCCTTCCTGTTTCGAGCTGACTCGTCCGTTTTATCGCGTTGAGCTC
TCCACACCGGGAGCTGACCTACAGGATTGGAAGCTACCGCTGTCTGCACT
TTGTTGTGGCTACGAGTGAGTTGTTTTGCGTGCGTAATCGTGTGTGCTCG
CTCTTCGGCACGGCGAGCACCACCGAGGTTCCCAGCATTTAATTCGGGTG
TCGATTCCACGCCTGTCTCCGTCGCCAGATTCTGCGAGGGGAGAGGGAGC
TGCGATGGGCACAACCTTGAAGCCCACATGCGTTCACCGCCGCGAGGAGA
CGTTCGTCGGTTGCGAGAGCGGGGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8631:6634..7661+

>mRNA_L-elsbetiae_contig8631.17669.1 ID=mRNA_L-elsbetiae_contig8631.17669.1|Name=mRNA_L-elsbetiae_contig8631.17669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig8631:6634..7661+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATAGTTTTGACCAATTCTGTAACGCCACGGGCCGTAACCAACAG
TCTGAACTGCGGATCCTCAGCAGTATCTGGCGGTATCAGCTACTACTGCT
TGCTGAAGACCCGCAGTTCAGGAGATCGGGGTCCGTGGCAGCGCGCACAG
CAGTGGGAGACAGGATGTACATAGTTTTGACCAATTCTGTAACGCCACGG
GCCGTAACCAACAGTCTGAACTGCGGATCCTCAGCAGTATCTGGCGGTAT
CAGCTACTACTGCTTGCTGAAGACCCGCAGTTCAGGAGATCGGGGTCCGT
GGCAGCGCGCACAGCAGTGGGAGACAGGATTCTGCGAGGGGAGAGGGAGC
TGCGATGGGCACAACCTTGAAGCCCACATGCGTTCACCGCCGCGAGGAGA
CGTTCGTCGGTTGCGAGAGCGGGGATAAATTCTGCGAGGGGAGAGGGAGC
TGCGATGGGCACAACCTTGAAGCCCACATGCGTTCACCGCCGCGAGGAGA
CGTTCGTCGGTTGCGAGAGCGGGGATAA
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