mRNA_L-elsbetiae_contig8627.17661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8627.17661.1
Unique NamemRNA_L-elsbetiae_contig8627.17661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.940e-37
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    4 ASKPTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            ++KPTYN MVFD+IKTLKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVESGKFIK+K SYKLS EAKKPA
Sbjct:    3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.040e-36
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    7 SKPTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTYNVMVFD+IKTLKER+GSSIQAIKKSITATYP+LNFTPHQMR ALKKGVESGKFIK+K SYKLSPEAKKPA
Sbjct:   97 AKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.910e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    7 SKPTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTY+VMVFD+IK LKER GSS+ A+KK I ATYPSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    5 AKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.440e-32
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   28 MVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVFD+IKTLKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVESGKF+K+K SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.290e-30
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:   28 MVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            MVFD+IK+LKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVE+GKFIKVK SYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.150e-30
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   28 MVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVFD+IK LKER GSS+ A+KK I ATYPSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.770e-25
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   28 MVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSP 213
            MVFD+IKTLKER+GSSIQA+KKSITATYP+L+FTPHQMRSALKKGVE+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.360e-23
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   13 PTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            PTY+ M   +I  LKER+GSS+ AIKK I ATYP+LNF PHQ+R ALKKG E+G FIKVK SYK+SPEAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.650e-22
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   13 PTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            PTY+ M  +++K LKER+GSS+ AIKK ITA+YPSL FT H MRSALKKGVESGKFIKVK SYKLS   ++PA
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.730e-20
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   13 PTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLS 210
            PTY+ M  +++K LKER+GSS+ AIKK ITA+YPSL FT H +RSALKKGVESGKFIKVK SYKLS
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8627.17661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI3.940e-3788.16Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE1.040e-3690.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI3.910e-3484.00H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KST0_9PHAE6.440e-3289.71H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI1.290e-3089.55H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE5.150e-3085.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE6.770e-2580.65H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.360e-2369.44H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI3.650e-2269.86H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE2.730e-2072.73H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8627contigL-elsbetiae_contig8627:1625..3492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size471
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8627.17661.1prot_L-elsbetiae_contig8627.17661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8627 1625..3492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.6164618-CDS-L-elsbetiae_contig8627:1624..16511622816944.6164618-CDS-L-elsbetiae_contig8627:1624..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 1625..1651 +
1691683931.1909282-CDS-L-elsbetiae_contig8627:1624..16511691683931.1909282-CDS-L-elsbetiae_contig8627:1624..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 1625..1651 +
1622816944.6307743-CDS-L-elsbetiae_contig8627:2055..22141622816944.6307743-CDS-L-elsbetiae_contig8627:2055..2214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 2056..2214 +
1691683931.2028396-CDS-L-elsbetiae_contig8627:2055..22141691683931.2028396-CDS-L-elsbetiae_contig8627:2055..2214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 2056..2214 +
1622816944.6425886-CDS-L-elsbetiae_contig8627:3207..34921622816944.6425886-CDS-L-elsbetiae_contig8627:3207..3492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 3208..3492 +
1691683931.2145824-CDS-L-elsbetiae_contig8627:3207..34921691683931.2145824-CDS-L-elsbetiae_contig8627:3207..3492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 3208..3492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8627.17661.1

>prot_L-elsbetiae_contig8627.17661.1 ID=prot_L-elsbetiae_contig8627.17661.1|Name=mRNA_L-elsbetiae_contig8627.17661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MASKPTYNVMVFDSIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSA
LKKGVESGKFIKVKGSYKLSPEAKKPAPKPKKKVVKKVVKKVVKKKAVKK
TVAKKKPAAKKASTPKKKAAPKKVVKKTVAKKKPAAKKASTPKKKAAPKK
KTAKKA*
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mRNA from alignment at L-elsbetiae_contig8627:1625..3492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8627.17661.1 ID=mRNA_L-elsbetiae_contig8627.17661.1|Name=mRNA_L-elsbetiae_contig8627.17661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1868bp|location=Sequence derived from alignment at L-elsbetiae_contig8627:1625..3492+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCCACTTACAATGTGGTGAGTAGGGCTGACGGCGGCTT
TTTTCTTGGCATGTTTATCATAGGTTTGCTGGAAGGAGCGACGCTTCGCT
TGTTGTGACTTTCGAGTTTAGCTGCTTTCGCCCACCCCTGCTGTGTGTGC
TTTCTCTTGTGTTATAGTGTGCGCGATAGCAACCGGCCGAGTCATGGCAC
AGCCACAAGAACTGTAACTCCGAGCTATAATAGCACGCGTGTGTCACAAA
TGTCCTGCGTAGACGCGCTATAGTTTCATGCGGTTTTCAAAAGGCTGTTT
TGAAAATAAACAGTTAAATCAGAAATGTTTGTTTTTAGTCGGTGGCAGTC
TCGCTCTGAACTTTTTCCCCAACAACTCCGGCCGTGCTCGTTGCTCGCTC
TCTGGCTCCCCTCGCTGTTCACCTGTGTTAGATGGTATTTGATTCCATCA
AGACCCTCAAGGAGAGGAGCGGATCGTCCATCCAGGCCATCAAGAAGAGC
ATCACCGCCACCTACCCGTCTCTCAACTTCACCCCGCACCAGATGCGCAG
CGCCCTCAAGAAGGGAGTCGAGTCCGGCAAGTTCATCAAGGTGAGAGGTG
CTTGCTGCTTGGCTTCCTCTATCTACCTCATCTGAAGGCACGTGACAGGC
GCTCTTTGATCCACGCACACACAGCAGTAGCAGTGTAACCAGTTTGGTGT
CGGAACCCCAGACCGCTTTTCTGAATTACTGAGTATTTCGAACTGCTACA
AGTATTTTTTTCCCGTTTTTTGGCTTCTTCAAAGGTTTACACCTTGAAGT
GGCGGCTATTTGCGGCTCCACGAAACGTCTACCGTACATAGCATTATGTT
ACATATCCTGAATCGACTTACATCTCGCATATACATATATTATATATTCG
ATTTCATATTGCTAATAGCATCACGCATGCATGCCTTAAACAGAACGATG
TAGACTAGATACGTGATTTGATCATGGCCCGTTCTTGTAGTGTAAGGCCA
AATGTTATGGGAGTCAGATTGGAATCCTTCCAATCCACTGGGGTCACGCA
GATGAAGTTAGAATCGCTCAGGGCTCGCCTCCCAGACACCCGTTTGCAGC
CTAACCAACAGGAATGTGTGCTCCAACGGCGTGACTGTCTCGGAGCCAAG
GAATTGCGGAGGATTCCCTGGTTGGAAAATCGGCCGGATTCCAACGCGAA
ATTCCAGTGTGGCAACTTGGGTTTCAAAGCGTGTGAGGCCCACACCCCAC
TGTTGGTCCCCAAAGTTGGCTCCGAGACAGTCACACCATTGGAGCACACA
TCCTTGATGGTTGGGCTGCACGCGGATGTCTGGGAGGCGAGCCCTGAGTA
AAAAAGAGCGATTCTCAGCCAAAAAAAGTTCGTCTGCGTGCCCCCAGCGG
ATTGGAATCCAGAATTCCAGTCTGCTCCCATAAAATTTGGCCTGATTATT
GTAAAAGTAACCGAGGGGAGTTGGGTCGTCGTAAAGTTTAATGGCTTGAA
GAAATCTAGCTCCTAAGAAGCAGTGTCCGACCGCCTCTGTCTTAACCCCG
TCCCCTCTGCCTATGACGTTTTGTGTGCACCAGGTGAAGGGCTCCTACAA
GCTCAGCCCCGAGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGAAGGTTG
TGAAAAAGGTCGTCAAGAAGGTAGTGAAGAAGAAGGCCGTCAAGAAGACC
GTGGCGAAGAAGAAGCCCGCTGCCAAGAAGGCGTCTACCCCTAAGAAGAA
GGCCGCCCCCAAGAAGGTCGTCAAGAAGACCGTCGCCAAGAAGAAGCCCG
CTGCCAAGAAGGCGTCCACCCCTAAGAAGAAGGCCGCCCCCAAGAAGAAG
ACTGCCAAGAAGGCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8627:1625..3492+

>mRNA_L-elsbetiae_contig8627.17661.1 ID=mRNA_L-elsbetiae_contig8627.17661.1|Name=mRNA_L-elsbetiae_contig8627.17661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig8627:1625..3492+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCCACTTACAATGTGATGGCGTCCAAGCCCACTTACAA
TGTGATGGTATTTGATTCCATCAAGACCCTCAAGGAGAGGAGCGGATCGT
CCATCCAGGCCATCAAGAAGAGCATCACCGCCACCTACCCGTCTCTCAAC
TTCACCCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGTCGAGTCCGG
CAAGTTCATCAAGATGGTATTTGATTCCATCAAGACCCTCAAGGAGAGGA
GCGGATCGTCCATCCAGGCCATCAAGAAGAGCATCACCGCCACCTACCCG
TCTCTCAACTTCACCCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGT
CGAGTCCGGCAAGTTCATCAAGGTGAAGGGCTCCTACAAGCTCAGCCCCG
AGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGAAGGTTGTGAAAAAGGTC
GTCAAGAAGGTAGTGAAGAAGAAGGCCGTCAAGAAGACCGTGGCGAAGAA
GAAGCCCGCTGCCAAGAAGGCGTCTACCCCTAAGAAGAAGGCCGCCCCCA
AGAAGGTCGTCAAGAAGACCGTCGCCAAGAAGAAGCCCGCTGCCAAGAAG
GCGTCCACCCCTAAGAAGAAGGCCGCCCCCAAGAAGAAGACTGCCAAGAA
GGCCTAAGTGAAGGGCTCCTACAAGCTCAGCCCCGAGGCCAAGAAGCCCG
CCCCCAAGCCCAAGAAGAAGGTTGTGAAAAAGGTCGTCAAGAAGGTAGTG
AAGAAGAAGGCCGTCAAGAAGACCGTGGCGAAGAAGAAGCCCGCTGCCAA
GAAGGCGTCTACCCCTAAGAAGAAGGCCGCCCCCAAGAAGGTCGTCAAGA
AGACCGTCGCCAAGAAGAAGCCCGCTGCCAAGAAGGCGTCCACCCCTAAG
AAGAAGGCCGCCCCCAAGAAGAAGACTGCCAAGAAGGCCTAA
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