mRNA_L-elsbetiae_contig8620.17658.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8620.17658.1
Unique NamemRNA_L-elsbetiae_contig8620.17658.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8620.17658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8620contigL-elsbetiae_contig8620:7778..8437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size660
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8620.17658.1prot_L-elsbetiae_contig8620.17658.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8620 7965..8315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.4234002-UTR-L-elsbetiae_contig8620:7777..79641622816944.4234002-UTR-L-elsbetiae_contig8620:7777..7964Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8620 7778..7964 +
1691683931.0440638-UTR-L-elsbetiae_contig8620:7777..79641691683931.0440638-UTR-L-elsbetiae_contig8620:7777..7964Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8620 7778..7964 +
1622816944.4441564-UTR-L-elsbetiae_contig8620:8315..84371622816944.4441564-UTR-L-elsbetiae_contig8620:8315..8437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8620 8316..8437 +
1691683931.0719526-UTR-L-elsbetiae_contig8620:8315..84371691683931.0719526-UTR-L-elsbetiae_contig8620:8315..8437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8620 8316..8437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.4334326-CDS-L-elsbetiae_contig8620:7964..83151622816944.4334326-CDS-L-elsbetiae_contig8620:7964..8315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8620 7965..8315 +
1691683931.0604382-CDS-L-elsbetiae_contig8620:7964..83151691683931.0604382-CDS-L-elsbetiae_contig8620:7964..8315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8620 7965..8315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8620.17658.1

>prot_L-elsbetiae_contig8620.17658.1 ID=prot_L-elsbetiae_contig8620.17658.1|Name=mRNA_L-elsbetiae_contig8620.17658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MRSRRRSLPRLSTFSRVVRMSSKSSVPMVWHSWIRASAASFRWRKLNSRF
SLRRIRTSLEASSQIWCKRRRGHTAGKVLRGRGKLVGTGETIRLAHTHPS
DGGRGEKSPDGSNRNK*
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mRNA from alignment at L-elsbetiae_contig8620:7778..8437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8620.17658.1 ID=mRNA_L-elsbetiae_contig8620.17658.1|Name=mRNA_L-elsbetiae_contig8620.17658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig8620:7778..8437+ (Laminarionema elsbetiae ELsaHSoW15)
CTAAAAGGCAAACGTTGGGACGATACTGGGAATCGGGGGCTAAACACCGA
GAAAACATAGTGCCGCACAGACCACCAGCCACGCAACTCCGGGCCTCCTA
CCTACAACTAGATTACTCTGTTGAGTCTAGAAGGACGCGGTTTAGGTCGC
GCGCTCGTGGCTGTGTGACAAAATAGGGTTAGGGTCTATGCGGTCGAGGA
GAAGGTCGTTGCCCCGCCTCAGCACGTTCTCGAGGGTCGTCCGGATGTCG
AGCAAGTCGTCGGTGCCGATGGTATGGCACAGCTGGATAAGGGCTTCCGC
GGCCTCTTTCAGGTGGAGAAAGTTGAACTCGCGCTTCTCGTTGCGGAGGA
TACGAACGAGCCTAGAGGCGTCGTCCCAGATCTGGTGTAAGAGACGGCGA
GGCCACACCGCGGGCAAAGTACTGCGGGGAAGAGGGAAGTTGGTAGGTAC
CGGAGAAACCATTCGGCTCGCGCACACGCACCCATCCGATGGCGGGCGGG
GGGAGAAATCGCCTGACGGGTCAAACCGCAATAAATAAAACGTAAATAAA
TACACCGCAAACCGTTTCGCCTCGCCGACGCACACACACCCGTTGCGGGC
GGGGGGGGAGAAAGAAACGTGTTCGGCAAAGGTTACGTCCCGCCTCCACA
CACGCACCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8620:7778..8437+

>mRNA_L-elsbetiae_contig8620.17658.1 ID=mRNA_L-elsbetiae_contig8620.17658.1|Name=mRNA_L-elsbetiae_contig8620.17658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig8620:7778..8437+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTCGAGGAGAAGGTCGTTGCCCCGCCTCAGCACGTTCTCGAGGGT
CGTCCGGATGTCGAGCAAGTCGTCGGTGCCGATGGTATGGCACAGCTGGA
TAAGGGCTTCCGCGGCCTCTTTCAGGTGGAGAAAGTTGAACTCGCGCTTC
TCGTTGCGGAGGATACGAACGAGCCTAGAGGCGTCGTCCCAGATCTGGTG
TAAGAGACGGCGAGGCCACACCGCGGGCAAAGTACTGCGGGGAAGAGGGA
AGTTGGTAGGTACCGGAGAAACCATTCGGCTCGCGCACACGCACCCATCC
GATGGCGGGCGGGGGGAGAAATCGCCTGACGGGTCAAACCGCAATAAATA
AATGCGGTCGAGGAGAAGGTCGTTGCCCCGCCTCAGCACGTTCTCGAGGG
TCGTCCGGATGTCGAGCAAGTCGTCGGTGCCGATGGTATGGCACAGCTGG
ATAAGGGCTTCCGCGGCCTCTTTCAGGTGGAGAAAGTTGAACTCGCGCTT
CTCGTTGCGGAGGATACGAACGAGCCTAGAGGCGTCGTCCCAGATCTGGT
GTAAGAGACGGCGAGGCCACACCGCGGGCAAAGTACTGCGGGGAAGAGGG
AAGTTGGTAGGTACCGGAGAAACCATTCGGCTCGCGCACACGCACCCATC
CGATGGCGGGCGGGGGGAGAAATCGCCTGACGGGTCAAACCGCAATAAAT
AA
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