mRNA_L-elsbetiae_contig8600.17640.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8600.17640.1
Unique NamemRNA_L-elsbetiae_contig8600.17640.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 525 bits (1351), Expect = 6.480e-180
Identity = 274/295 (92.88%), Postives = 283/295 (95.93%), Query Frame = 1
Query:    1 TGQSHADAIVHIQPLVEELAGEVVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGASRAMVLTDMSSKELE-----LQETPEISTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            TGQS ADA+VHIQPLVEELA EVVELKPDQLEKY+KVGGHVRIIDGRFTGETGTILK+VKNPDGASRAMVLTDMSSKELE     LQETPE+STGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNN+GN K VRPQ+IRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAG+KGTIKHIDRTTLFLHSRTHT N GIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVI+GQHKGLMGQVVEATD+HVKVELHSKLKKV ISRNQ
Sbjct:  353 TGQSQADAVVHIQPLVEELADEVVELKPDQLEKYIKVGGHVRIIDGRFTGETGTILKIVKNPDGASRAMVLTDMSSKELEVYVSQLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQ 647          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 529 bits (1362), Expect = 4.820e-179
Identity = 273/290 (94.14%), Postives = 283/290 (97.59%), Query Frame = 1
Query:    1 TGQSHADAIVHIQPLVEELAGEVVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGASRAMVLTDMSSKELELQETPEISTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            TGQS ADA+VHIQPLVEELA EVVELKPDQLEKY+KVGGHVRIIDGRFTGETGTILK+VKNPDGASRAMVLTDMSSKELELQETPE+STGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNN+GN K VRPQ+IRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAG+KGTIKHIDRTTLFLHSRTHT N GIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVI+GQHKGLMGQVVEATD+HVKVELHSKLKKV ISR+Q
Sbjct:  457 TGQSQADAVVHIQPLVEELADEVVELKPDQLEKYIKVGGHVRIIDGRFTGETGTILKIVKNPDGASRAMVLTDMSSKELELQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRSQ 746          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A7S1GNB8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNB8_CYCTE)

HSP 1 Score: 219 bits (557), Expect = 1.760e-63
Identity = 127/285 (44.56%), Postives = 182/285 (63.86%), Query Frame = 1
Query:   64 EVVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNR-----GQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            E VE    Q+ KY+ VG HV+++DGR+  ETG ++  V+  +G +   A+VLTD+++KE+     +L+E+ E+++G D L GYELYDLV+L      NEVGV+ RV RED  VVNN G ++ VRP+++RGK+N +S RA  VD Q NQ+ V + V V EG H G   TIK ++RT LFL+S+T T N GIF VR+RS +LAG  ++     G   V       + +          R+D ++ KTV++  GQ KG +G V +AT SHV+VELHS+LKKV ++R +
Sbjct:   19 EEVEFLSSQVRKYIAVGAHVKVMDGRYANETGNVV-AVEQLEGETDCTAVVLTDITNKEITVRTSQLRESAEMASGQDKLAGYELYDLVVLSGGGSTNEVGVIVRVGREDFTVVNNHGISREVRPEELRGKQNQRSNRALAVDVQANQIRVGDQVTVTEGPHKGKTATIKRMNRTQLFLYSQTRTENAGIFVVRSRSVMLAGSRSQRSSGGGDGGVSPFSTPRSQSSGPPGGARGKRDDALIGKTVRIQSGQWKGYLGTVADATASHVQVELHSRLKKVMVTRER 302          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A7S2VA26_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA26_9STRA)

HSP 1 Score: 214 bits (546), Expect = 8.090e-62
Identity = 125/295 (42.37%), Postives = 187/295 (63.39%), Query Frame = 1
Query:   28 VHIQPLVEELAGEVVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEIN---ASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            V +QP    +  E+ E    Q+ KY+ +G HV++ DGR+  ETGT++  V+  DGA    A+VLTD+++KE+     +L+E+ E +TG D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G A+  RP+++RGKRN+ S+RA  +D Q NQL   + V VVEG+H G   T+K ++R+ LFLHS+T + + G+F V++RS +LAG  ++ +   G  G       S +       R R+D ++ KTV++  G  KG +G V + T +HV+VELH++LKKV ++  +
Sbjct:   36 VKVQPNDPNVTDEI-EFLASQVRKYIAMGSHVKVTDGRYANETGTVV-AVEQMDGAQDFTAVVLTDITNKEITVRISQLRESAETTTGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIAREARPEELRGKRNAMSQRAVALDVQGNQLRSGDTVNVVEGRHKGKAATVKRMNRSQLFLHSQTRSEHAGVFVVKSRSCVLAGSRSQSRPGAGDGGATPWTPQSHQTGRPGAGRKRDDGLIGKTVRIQAGNWKGFIGTVSDTTGTHVEVELHARLKKVTVTHER 328          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: B7G376_PHATC (Transcription elongation factor SPT5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G376_PHATC)

HSP 1 Score: 218 bits (555), Expect = 6.790e-61
Identity = 125/283 (44.17%), Postives = 180/283 (63.60%), Query Frame = 1
Query:   70 VELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAA-----VGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            +E   +QL KY+ VG HV++ DGR+  ETG ++  V+  DG +   A+VLTD+++KE+     +L+E+ E+++G D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G  + +RP+++RGKRNS S+RA  +D Q NQ+   + V VVEG H G   TIK + R  LFLHS+T T + GIF VR+RS +LAG   + + A     V       + ++         R+D ++ KTV++  GQ KG +G V +AT +HV+VELHS+LKKV + R +
Sbjct:  525 IEFLGNQLRKYIPVGAHVKVTDGRYANETGVVV-AVEQLDGETDFTAVVLTDVTNKEISVRTSQLRESAEVASGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIVREIRPEELRGKRNSTSQRAVALDVQGNQIRASDSVNVVEGPHKGKTATIKRMSRAQLFLHSQTRTDHAGIFVVRSRSCVLAGTRTQARGATPDSGVSPFATPQSQSRGGPQPGRGKRDDGLIGKTVRIQAGQWKGYLGTVADATATHVQVELHSRLKKVMVVRER 806          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A7S2V7W2_9STRA (Transcription elongation factor SPT5 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V7W2_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.130e-59
Identity = 125/295 (42.37%), Postives = 187/295 (63.39%), Query Frame = 1
Query:   28 VHIQPLVEELAGEVVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEIN---ASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            V +QP    +  E+ E    Q+ KY+ +G HV++ DGR+  ETGT++  V+  DGA    A+VLTD+++KE+     +L+E+ E +TG D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G A+  RP+++RGKRN+ S+RA  +D Q NQL   + V VVEG+H G   T+K ++R+ LFLHS+T + + G+F V++RS +LAG  ++ +   G  G       S +       R R+D ++ KTV++  G  KG +G V + T +HV+VELH++LKKV ++  +
Sbjct:  491 VKVQPNDPNVTDEI-EFLASQVRKYIAMGSHVKVTDGRYANETGTVV-AVEQMDGAQDFTAVVLTDITNKEITVRISQLRESAETTTGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIAREARPEELRGKRNAMSQRAVALDVQGNQLRSGDTVNVVEGRHKGKAATVKRMNRSQLFLHSQTRSEHAGVFVVKSRSCVLAGSRSQSRPGAGDGGATPWTPQSHQTGRPGAGRKRDDGLIGKTVRIQAGNWKGFIGTVSDTTGTHVEVELHARLKKVTVTHER 783          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A7S2LCY0_9STRA (Transcription elongation factor SPT5 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCY0_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.200e-59
Identity = 126/283 (44.52%), Postives = 177/283 (62.54%), Query Frame = 1
Query:   70 VELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS-RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAV------GYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            +E    Q+ KY+  G HV+++DGR+  ETGT++ +  +  G    A+VLTD++ KE+     +LQE+ EI++G D L GYEL+DLV+L      NEVGV+ RV RE+  V+NN G  + VRP+++RGKRNS SRRA  +D Q NQ+ V + V V EG H G   TIK ++R  LFL+S+T T + GIF VR+RS +L+G  NR           G+ G   A  +   +K    R D ++ KTV+V  GQ KG +G V +AT +HV VELHS+LKKV + R +
Sbjct:  596 IEFLMGQVRKYIPTGAHVKVMDGRYANETGTVVAIDDSMGGNDCLAVVLTDLTHKEISVRTSQLQESAEIASGQDKLAGYELHDLVVLSGGGSTNEVGVIVRVGREEFTVINNHGIVREVRPEELRGKRNSSSRRAVALDVQGNQIRVGDSVNVAEGPHKGKTATIKQMNRAQLFLYSQTRTEHAGIFVVRSRSCVLSGARNRSSMETANANGNGFKGGGGAGGRG--IK----REDGLIGKTVRVSSGQWKGYIGTVADATATHVSVELHSRLKKVMVLRER 872          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A1Z5KC20_FISSO (Transcription elongation factor SPT5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC20_FISSO)

HSP 1 Score: 213 bits (543), Expect = 3.150e-59
Identity = 128/283 (45.23%), Postives = 180/283 (63.60%), Query Frame = 1
Query:   70 VELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAG--RMNRGQAAVGYMGEI---NASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            VE    Q+ KY+ VG HV++ DGR+  ETG ++ V K  DG S   A+VLTD+++KE+     +L+E+ EI++G D L GYELYDLV+L      NEVGV+ RV RED  V+NN G A+ VRP+++RGKRNS S RA  +D Q NQ+   ++V V EG H G   TIK + R  LFLHS+T + + GIF VR+RS +L+G  + +RG    G +       + +    V    N++D ++ KTV+V  GQ KG +G V + T +HV+VELHS+LKKV + R +
Sbjct:  542 VEFLIGQVRKYIPVGAHVKVTDGRYANETGVVVAVEKL-DGESDFTAVVLTDVTNKEVSVRTSQLRESAEIASGQDRLSGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGLAREVRPEELRGKRNSTSVRAVALDVQGNQIRCGDIVNVAEGPHKGKAATIKRMSRAQLFLHSQTRSEHAGIFVVRSRSCVLSGSRQQSRGSGIDGGVSPFATPQSQSTRGPVGGRGNKDDGLIGKTVRVQAGQWKGYIGTVADTTATHVQVELHSRLKKVLVVREK 823          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A7S2GRM5_9STRA (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRM5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.210e-58
Identity = 117/268 (43.66%), Postives = 167/268 (62.31%), Query Frame = 1
Query:   97 KYLKVGGHVRIIDGRFTGETGTILKVVK-NPDGASRAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            KY+ VG HV++ DGR+  ETG ++ V +   D    A+V+TDM+ KE+     +LQE+ E+++G D L GYEL+DLV+L      NEVGV+ RV RE+  V+NN G  + VRP+++RGKRNS S+RA  +D Q NQ+   ++V + EG H G   TIK + R  LFL+S+T T + GIF VR+RS +L+G   R  AA     +             R   D ++ KTVKV  G+ KG +G V +AT +HV+VELHS++KKV + R +
Sbjct:    2 KYIAVGPHVKVTDGRYANETGIVVAVEELEGDTDCIAVVMTDMTHKEVSVRTSQLQESAEVASGQDKLAGYELHDLVVLSGGGSANEVGVIVRVGREEFTVINNHGIVREVRPEELRGKRNSSSQRAVALDVQGNQIRCGDLVSIAEGPHKGKTATIKRMSRAQLFLYSQTRTEHAGIFVVRSRSCVLSGSRARPAAADTRQSQ----GGXXXXXXXRRGEDGLVGKTVKVQSGKWKGYLGCVSDATATHVQVELHSRMKKVMVVRER 265          
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Match: A0A6S8Z740_9STRA (Transcription elongation factor SPT5 n=9 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8Z740_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.670e-58
Identity = 126/303 (41.58%), Postives = 186/303 (61.39%), Query Frame = 1
Query:   28 VHIQPLVEELAGE--------VVELKPDQLEKYLKVGGHVRIIDGRFTGETGTILKVVKNPDGAS--RAMVLTDMSSKEL-----ELQETPEISTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKN---DIVKDFRNRNDEMLAKTVKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ 870
            V ++P+ E+ +GE         VE    Q+ K++ VG HV+++ GR+  ETGT++ V K  DG S   A +LTDM+ KE+     +LQE+ E+++G D L GYEL+DLV+L      NEVG + RV RE+  V+NN G  + VRP+++RGKRNS S RA  +D Q NQ+ V + V+V EG H G   TIK + R  LFL+S+T T N G+F VR+RS +L+G   + + A G     +    N    I      ++D +++KTV++  G  KG +G V +AT +HV+VELHS+LKK+ + R +
Sbjct:  490 VKVRPIAEDGSGEDLTEMTMNEVEFLVSQVRKHIAVGAHVKVLSGRYANETGTVVAVEKL-DGESDFTAALLTDMTHKEVLVRISQLQESAEVASGQDKLAGYELHDLVVLSGGGSTNEVGCIVRVGREEFTVINNHGIIREVRPEELRGKRNSSSGRAVALDVQGNQIRVGDTVKVAEGPHKGKSATIKRMSRAQLFLYSQTLTKNAGVFVVRSRSCVLSGNRVQNREAPGGASPFSTPRSNGNQQIGARGGRKDDGLISKTVRIQAGNWKGYLGTVSDATPTHVQVELHSRLKKIMVLRER 791          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8600.17640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFI1_9PHAE6.480e-18092.88Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
D7FI29_ECTSI4.820e-17994.14Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A7S1GNB8_CYCTE1.760e-6344.56Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2VA26_9STRA8.090e-6242.3750S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
B7G376_PHATC6.790e-6144.17Transcription elongation factor SPT5 n=2 Tax=Phaeo... [more]
A0A7S2V7W2_9STRA1.130e-5942.37Transcription elongation factor SPT5 n=1 Tax=Amphi... [more]
A0A7S2LCY0_9STRA2.200e-5944.52Transcription elongation factor SPT5 n=2 Tax=Lepto... [more]
A0A1Z5KC20_FISSO3.150e-5945.23Transcription elongation factor SPT5 n=2 Tax=Fistu... [more]
A0A7S2GRM5_9STRA2.210e-5843.6650S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A6S8Z740_9STRA5.670e-5841.58Transcription elongation factor SPT5 n=9 Tax=Chaet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8600contigL-elsbetiae_contig8600:874..6595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.4
Seed ortholog evalue1.6e-149
Seed eggNOG ortholog2880.D7FI29
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Exons7
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816943.1145933-CDS-L-elsbetiae_contig8600:873..10131622816943.1145933-CDS-L-elsbetiae_contig8600:873..1013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 874..1013 +
1691683930.044891-CDS-L-elsbetiae_contig8600:873..10131691683930.044891-CDS-L-elsbetiae_contig8600:873..1013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 874..1013 +
1622816943.1283886-CDS-L-elsbetiae_contig8600:1580..16801622816943.1283886-CDS-L-elsbetiae_contig8600:1580..1680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 1581..1680 +
1691683930.0591562-CDS-L-elsbetiae_contig8600:1580..16801691683930.0591562-CDS-L-elsbetiae_contig8600:1580..1680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 1581..1680 +
1622816943.1426306-CDS-L-elsbetiae_contig8600:2472..25891622816943.1426306-CDS-L-elsbetiae_contig8600:2472..2589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 2473..2589 +
1691683930.0692544-CDS-L-elsbetiae_contig8600:2472..25891691683930.0692544-CDS-L-elsbetiae_contig8600:2472..2589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 2473..2589 +
1622816943.1545582-CDS-L-elsbetiae_contig8600:4123..42461622816943.1545582-CDS-L-elsbetiae_contig8600:4123..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 4124..4246 +
1691683930.0791993-CDS-L-elsbetiae_contig8600:4123..42461691683930.0791993-CDS-L-elsbetiae_contig8600:4123..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 4124..4246 +
1622816943.1653242-CDS-L-elsbetiae_contig8600:4727..49011622816943.1653242-CDS-L-elsbetiae_contig8600:4727..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 4728..4901 +
1691683930.0895858-CDS-L-elsbetiae_contig8600:4727..49011691683930.0895858-CDS-L-elsbetiae_contig8600:4727..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 4728..4901 +
1622816943.177015-CDS-L-elsbetiae_contig8600:5503..56051622816943.177015-CDS-L-elsbetiae_contig8600:5503..5605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 5504..5605 +
1691683930.1011128-CDS-L-elsbetiae_contig8600:5503..56051691683930.1011128-CDS-L-elsbetiae_contig8600:5503..5605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 5504..5605 +
1622816943.1879036-CDS-L-elsbetiae_contig8600:6481..65951622816943.1879036-CDS-L-elsbetiae_contig8600:6481..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 6482..6595 +
1691683930.11223-CDS-L-elsbetiae_contig8600:6481..65951691683930.11223-CDS-L-elsbetiae_contig8600:6481..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8600 6482..6595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8600.17640.1prot_L-elsbetiae_contig8600.17640.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8600 874..6595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8600.17640.1

>prot_L-elsbetiae_contig8600.17640.1 ID=prot_L-elsbetiae_contig8600.17640.1|Name=mRNA_L-elsbetiae_contig8600.17640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
TGQSHADAIVHIQPLVEELAGEVVELKPDQLEKYLKVGGHVRIIDGRFTG
ETGTILKVVKNPDGASRAMVLTDMSSKELELQETPEISTGLDSLQGYELY
DLVMLGPNEVGVVTRVNREDLEVVNNAGNAKMVRPQDIRGKRNSQSRRAF
VVDTQQNQLEVDNVVEVVEGQHAGAKGTIKHIDRTTLFLHSRTHTVNGGI
FPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKT
VKVIKGQHKGLMGQVVEATDSHVKVELHSKLKKVFISRNQ
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mRNA from alignment at L-elsbetiae_contig8600:874..6595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8600.17640.1 ID=mRNA_L-elsbetiae_contig8600.17640.1|Name=mRNA_L-elsbetiae_contig8600.17640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5722bp|location=Sequence derived from alignment at L-elsbetiae_contig8600:874..6595+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGCAGTCGCACGCGGACGCCATCGTGCACATCCAGCCCCTGGTGGA GGAGCTGGCCGGGGAGGTGGTGGAGCTCAAGCCCGACCAGCTTGAGAAGT ACCTCAAGGTCGGGGGGCACGTGAGGATCATCGACGGCAGGTGGGTGGGG GGGGACCGCCCTCGCGAAGAAATATATATTTTTTTAATCTAGAAAATAGA GACAGGGGTTCCGTAATCCTACATAACCCTAACCCCAAACCGACCCCCGC TTAGCCGTTCCCAAAATATATCCCATACGTATGTATGTTGGCTTGCCCAA GAGCCCGCGGCTACGCTGTGGGTGGGTTAGTGGACGGGTGGGTGGCGGAG GAGGTTTGATTTTTTCACGTGCAGCTGTCACTGCTTCGGCGGTGGTGGGT GTGCTGGGGGCATTGGCTTGGCGAGGCAGTCGGTAACCCTGAGCTTGCGA TCAGTGGTTGGGTACATAGTGGCGGTTCATGTTGCCGTGCCGTTGCACTA CTAGGTAAGTTTGATTGTCGACGGGAAACGAGGCAGTTATTTAGAAGCAA CGTTTGCTGATGTCTCGCGATTGTGTCTGTGTCCCGGCGTCGACGATTAT TTGACTCCCAACTCCCATCAACTATTGGTTTCGGCTGCTGCTGCTGCTGC TGCTGTTTCTGCTGTTTCTGCTGTTTCGGCTGTTTCTGCCTGCTGCTGCT GTTTCAGGTTTACGGGCGAGACGGGGACGATCCTGAAGGTGGTCAAGAAC CCTGACGGCGCGAGCCGGGCCATGGTGCTCACTGACATGAGCTCCAAGGA GCTGGAGGTGTGTGTATGTATGTGTGTGTGCATGCGTGTCTGTGTGCATT TTATTTTGCGTGGCCTCTGATTCCAGCGAAAACAGCTTTTCAGCTGGAAC CAGGCGGTGTATTGTTTATTTTGCGCGCCTGCCCGCCCTGTTTGTTTTTC TCCCTTGTGGGGTGGGGTAGAACTGCTGTCTCATGCGTATTCCCCGACCT CTTCTTGCGGTGTGCGGTGTACATTCATATTTAGTCAGATCGAGCAGAGA AGACGTCGTATTCGTGACTTTGGCCTCGAGCTCGGGGCATGGGGGCTCTG TGTAGTGATAACAGCAGTGCCTCCTTCCTGCCCAGGAACAGCCGTCTATT TTCACTCCGGCCTTCCCTTGCAGCCTGCCACTTTTCGGCATTTTTCTCGT CTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTTCC TCTCCCCCCCTCCCTCCTTCTCTCCCCCTTTCTCTCTCCTCCCCCCTCTC CCTCCTCCTCNNNNNNNNNNATTTAACCTTTACTGTTTATCATGTCAGAT TCAACGAGCTGACCAAATCAGCATAAACCGGTCCCCCCCCCTGGCACGTT CTCCATTTATTCTTTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTGTC TGTCTCGCTCTCTCCCTGTCTCTCTCAACCTCTCTCAACCTCTCTCAACC TCTCTCAACCTCTCAACTCTCAACATCTCTCTTTCTATCGCTCTCTCTAT CTATCTATCTCTCTCTTTCTTTGTTTCCTGTCAGGTGTACGTTTCCCAGC TGCAGGAGACCCCCGAGATCAGCACCGGCCTCGACTCGCTCCAAGGGTAC GAGCTGTACGACCTTGTCATGCTCGGGCCCAACGAGGTCGGCGTGGTGAC CAGGGTCAACAGGGAGGTGAGTGAGTCACGGAACACGCGTCCGTGTTTCG TGCCCCGAGTGTATAGGGGCGAGGAGAGGCCATGGAAACTTGACGGGGGA ACCACCTTGCCGCAGCGGTCGCCGCCCTTATCACACCCCGGTTGGGTCGT CTAGCTAGTCGTAGTGGAGGAAAGGGGGCCGGCCAATGGGACAACCGACG AATAATCCAATATCGAGTCTTTGCTCTAGTGTGGGGTAGGTTCCATCTTT GATTCTTTGTTTATTTTTAAGCCAATACTGGGAGGAGAGCAAAAAAACCC CTCCTGATTTCATGTAGATATGTACATACTGAGTATGATACATAGATACA TTGGTCCGGCAGAACTTCTGTTCCGATATGTCATCAGTAGGCTGTCGGTA GGCTGTCGGCCTCCAATGGCCCAAACGAACGTCAGGATGACAGCAGCTGT CTCTTTCAGTCGAAGAATACATATATGTATATACATACATATGGATGTAT GTAGCTCGGAGCAACTCCAGTGTTTTTTTTTTTTTTGTATTTTGCATCTT CACATCTGTTACCAGCACCAGAAGCTCCTTGCCACGAAGGACGTTTTGCC AGAGCACTGACCCGCGGTCGCACATAAGGGTTCCTCTCCCCGAGCCCCCC CCCCCACACACACACACCTCTCTGCGGTGCTCCCTTAAGGTTTTTTGTCG CGAGAAGGGTTCAGCCATCCCTTTTCCCTCGTCGGCGGTCGGTATTTAAG GTCGAAGGTTGTGTACTACACACGCCGTGCAAGCGTTATCCACTGACAGG GACGAAAAGCGAGAGAAAAAACTCACTTTCCAAGAAACAGTCGCTCCCGC CGGTATATTCGAACCCGTGAGCTGCCCGCTAGAAGGTGCTAGGGGGCGTA CCTCTTCATGTAGACACGTAGTTCGGGGCAACTCTCCAAGTATCACATTT TCTAGGGTTGGGTCCTGGACCAGTGTGTACTGCCAGTACTCCTTTACTGG CGGTACTCCTGGTACTGGCTGAGAGGAGGCTGCCAATGCAGCCAGTTCTT GGCCCACTCACGTACGTCCTACATTATATTATGCCTCCTCAACCGCATGG AAACCCACGAATTGCGCCGCGTCAGGGGGGAGAGGCCGTGAGACGAAGGC ACGCACACACTACAATAGAGGGAGTTGGGAGAATGGAACAGCAGCATGAC AGAAGCAATAATACATTTTTGCTCCCCTCGCCTCTCCTTTTTTTATACAG AAGTAAGTACATACATAGCAGTAGCAGTAGCAGTAGCAGCGGCAGTAGGG AAATGGTGTCTTGAGAAGGTGGCCCTGCTGCTGGACTCTGGTGGCGAGGA GAAAGAGGAAACCGATCTTTGCCGCCCTTAAATACACGGCATGAACGGTG AGGATTGAGGACGTAGGCATGTAAATATCGCACGAGACGCGTGCCCGGCA TAACTTGGCTTTTTTTCTTCTTCTAACACGGATGGTGGACTGCTGCTGTT TTGTTGATGGGCGTGACCGTGGGGACGTGGGCGTGGGCGTGGGCGTGCAG GACTTGGAAGTGGTGAATAACGCCGGCAACGCGAAGATGGTCAGGCCCCA GGACATCAGGGGGAAGAGGAACTCGCAGAGCCGCAGGGCCTTCGTTGTCG ACACGCAGCAGAACCAGCTGGAGGTATGCATGTTTGATGCCATGGGGTGA CGGACAGCCCTGCCGTTGTTGTTGGTTGTTGTTGCTGTTGTTGTTTGTTT CTTTGTTGCTGTACCTGTTGTTGTTTGTTTTTGTTTATTGTCTGTTTTGT GTTTGTTGTTGTTTGTTGTTTGTTTCGCGTTCTCAACGTCCGATGTGTGG TTACTATATTTTTGTTCCAAGTGTATTACTTATTTCTACAGGCAGCAGTG ACCTGACAAAGACCGATCGAATCTTCCCCACCGTCCTCCCGCCGCCGCAG TTCCAACTGGATGAAACGGACTCCTGTGCCATCCCTTTTGCCCCGATGGA AGTTGGATTTTCCCGGGGCTGGGGCTGACGTGGTCGAGTCAACCCCATCC CCCCCCCCTGGAAACATGAACAAGACACAAAAATCGCTTTTCGCCCCCCC CCCCCCTCGCCGCATTATCTATCGCTTTGTGTGTCGGTGTTGTTTTTTGA GCAGGTGGACAACGTGGTGGAGGTGGTGGAGGGGCAGCACGCCGGGGCGA AGGGCACGATCAAGCACATCGACCGCACGACGCTTTTCCTGCACTCGAGG ACGCACACGGTGAACGGCGGCATCTTCCCCGTCCGGGCCAGGAGCGCCCT GCTCGCGGGGAGGATGAACCGCGGTCAGGTGCGTGCCTTCCTCCCTTGGC TTCCTGTGTGTAGATACGTAGGTGGATGTCTTCTCCGTGTATCTACGAGT CAAGAGATGCTGCCTGCCTGCCTGTCTGTCTTGTCTGTCTGCTTGCCTGC CTGTCTATGTGTGTGTTCGTTTGTGTGCTTGTCTATCTGTCTGTCTGTCT GTCTGTCTGCCTGCTTGCCTGCTTGGCCCTCTGTCTGTCTGTCTGTCTGC CTGTCTGTCTGTCTGTCTGCCTGTCTGTCTGTCTGTCTGCCTGTCTGTCT TGTCTATCTGCCTGTCTGCCTATCTACCTGTCTGTACCTGTGCCTGCCTT GTAGCCTGTGCATCCTCTAGGGTGACGGACGAAATCGACGCCTATACGCA CAACCGTATTCATCGTTATCTTATGGACGAAGCCGCGCTTTGTTCAACCA TAAACATGCGTGAACAGCTTGGACACGGTGTGGTGTGGCCTGTATATGTA CACCCACATCGTTATTTCAAGCCACGCCTGTAATTTACAACCATCAAAAT ATGATGTATGTATGCATATTTAGCTTGGGCCATGGTGAGGGGTGACGTGA AATGAAACGGAATGGAATGTGGAACCACAGGCGGCGGTGGGGTACATGGG CGAGATCAACGCTTCGGCAAAGAACGACATCGTCAAGGACTTCAGGAACC GGAACGACGAGATGCTGGCCAAGACTGTCAAGGTGTGTACCGTATACATA CGACACAAGATAGCACACCCCCTGGACCGATTTTCAAATCGATCCAGGGG GTGTGTTATCTTGTTTCGTTTACGGTACCCACGCCGCATGCACTTACCCA CTGCATGCTCCCCAAACGTGGGTACACACACCTTGGCCGGAAATGCATGC ATGCGGCATAGGTATCCATGGTACGTTACACTAGAACGCAGGTTTTGGTA GTAGTTCACAAAGACTACCTAGATAGCAGCAGCAGCAGCAGCAGCAGTGG TGGTGGTGGTGGTGGTGGTGGTGACAACATTTTTGGCGTTGTTGTGAAGA ACACGCTTTTGTGTGGGCGGGGGGGGGTGACGTAAATTCATCTGTACTCC CGAGAATAGGCAGCAGGGGTCTTGCAATCACAAACGTGCTTGTACTACAT ACCGTAGGTGACATAAGATAAGACACCCCCTGGACGGATTTTGAAAGCTT GGTTACTCCGCAACGAATACGATTCTAACCATAAACGCCACATTCTCGGA CAGCCCTTGACTAGATCTTTCCAACGCCACCCTTTTTGGCACTGGCACTC TTCTTGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGT ATCTTGTGTCACCTACGGTATGAATCTTAATCTTACCTCTTCGCCCTCTC AATACACATCTCGGGTGACTGGCTTGCGAAGTAGTTTTTGTGCACCCTCC AGCGGGGGGAAATGGGAAAATGGACATTGCTGCTTGCTGTTGCTGTCTTC ACTTTTTTCTTTGCGCCCCCGGGTTGTCAACGTCCCAATCACTATTTATT CTCGTGTTCCGTTTGGATCTGACTTTTGGTTTTTAATACCTTACCTCATT CATGGAAGGTGATCAAGGGGCAGCACAAGGGTCTCATGGGCCAGGTGGTG GAGGCCACCGACTCGCACGTTAAGGTCGAGCTTCACTCCAAGCTCAAGAA GGTCTTCATCTCCAGAAACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8600:874..6595+

>mRNA_L-elsbetiae_contig8600.17640.1 ID=mRNA_L-elsbetiae_contig8600.17640.1|Name=mRNA_L-elsbetiae_contig8600.17640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig8600:874..6595+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGCAGTCGCACGCGGACGCCATCGTGCACATCCAGCCCCTGGTGGA
GGAGCTGGCCGGGGAGGTGGTGGAGCTCAAGCCCGACCAGCTTGAGAAGT
ACCTCAAGGTCGGGGGGCACGTGAGGATCATCGACGGCAGACGGGGCAGT
CGCACGCGGACGCCATCGTGCACATCCAGCCCCTGGTGGAGGAGCTGGCC
GGGGAGGTGGTGGAGCTCAAGCCCGACCAGCTTGAGAAGTACCTCAAGGT
CGGGGGGCACGTGAGGATCATCGACGGCAGGTTTACGGGCGAGACGGGGA
CGATCCTGAAGGTGGTCAAGAACCCTGACGGCGCGAGCCGGGCCATGGTG
CTCACTGACATGAGCTCCAAGGAGCTGGAGGTTTACGGGCGAGACGGGGA
CGATCCTGAAGGTGGTCAAGAACCCTGACGGCGCGAGCCGGGCCATGGTG
CTCACTGACATGAGCTCCAAGGAGCTGGAGCTGCAGGAGACCCCCGAGAT
CAGCACCGGCCTCGACTCGCTCCAAGGGTACGAGCTGTACGACCTTGTCA
TGCTCGGGCCCAACGAGGTCGGCGTGGTGACCAGGGTCAACAGGGAGCTG
CAGGAGACCCCCGAGATCAGCACCGGCCTCGACTCGCTCCAAGGGTACGA
GCTGTACGACCTTGTCATGCTCGGGCCCAACGAGGTCGGCGTGGTGACCA
GGGTCAACAGGGAGGACTTGGAAGTGGTGAATAACGCCGGCAACGCGAAG
ATGGTCAGGCCCCAGGACATCAGGGGGAAGAGGAACTCGCAGAGCCGCAG
GGCCTTCGTTGTCGACACGCAGCAGAACCAGCTGGAGGACTTGGAAGTGG
TGAATAACGCCGGCAACGCGAAGATGGTCAGGCCCCAGGACATCAGGGGG
AAGAGGAACTCGCAGAGCCGCAGGGCCTTCGTTGTCGACACGCAGCAGAA
CCAGCTGGAGGTGGACAACGTGGTGGAGGTGGTGGAGGGGCAGCACGCCG
GGGCGAAGGGCACGATCAAGCACATCGACCGCACGACGCTTTTCCTGCAC
TCGAGGACGCACACGGTGAACGGCGGCATCTTCCCCGTCCGGGCCAGGAG
CGCCCTGCTCGCGGGGAGGATGAACCGCGGTCAGGTGGACAACGTGGTGG
AGGTGGTGGAGGGGCAGCACGCCGGGGCGAAGGGCACGATCAAGCACATC
GACCGCACGACGCTTTTCCTGCACTCGAGGACGCACACGGTGAACGGCGG
CATCTTCCCCGTCCGGGCCAGGAGCGCCCTGCTCGCGGGGAGGATGAACC
GCGGTCAGGCGGCGGTGGGGTACATGGGCGAGATCAACGCTTCGGCAAAG
AACGACATCGTCAAGGACTTCAGGAACCGGAACGACGAGATGCTGGCCAA
GACTGTCAAGGCGGCGGTGGGGTACATGGGCGAGATCAACGCTTCGGCAA
AGAACGACATCGTCAAGGACTTCAGGAACCGGAACGACGAGATGCTGGCC
AAGACTGTCAAGGTGATCAAGGGGCAGCACAAGGGTCTCATGGGCCAGGT
GGTGGAGGCCACCGACTCGCACGTTAAGGTCGAGCTTCACTCCAAGCTCA
AGAAGGTCTTCATCTCCAGAAACCAGGTGATCAAGGGGCAGCACAAGGGT
CTCATGGGCCAGGTGGTGGAGGCCACCGACTCGCACGTTAAGGTCGAGCT
TCACTCCAAGCTCAAGAAGGTCTTCATCTCCAGAAACCAG
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