mRNA_L-elsbetiae_contig86.17633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig86.17633.1
Unique NamemRNA_L-elsbetiae_contig86.17633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: D7FLS0_ECTSI (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS0_ECTSI)

HSP 1 Score: 380 bits (976), Expect = 1.260e-127
Identity = 188/214 (87.85%), Postives = 199/214 (92.99%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQDDILQGALRMITPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNV 642
            RF EARSLLDY YHSHYTLERQHVQDDILQ ALR  TPGSLE PWAVFTAGAMGAGKSHVMG+LGERG+FPM+AFVQVDPD LRR+LPEMEGYVR D GTAGSLTHKEAGL+AE+LEETALLQGRNILVDGSMR+G WY+ HVGDLRRRFPRLRVAIIHVWAPEEEV+ RAVRRGL TGRVIPP VLR+TI+AVPRSVE LAPLADYCVRIDNV
Sbjct:  165 RFGEARSLLDYSYHSHYTLERQHVQDDILQEALRTKTPGSLENPWAVFTAGAMGAGKSHVMGVLGERGLFPMDAFVQVDPDSLRRKLPEMEGYVRSDPGTAGSLTHKEAGLLAELLEETALLQGRNILVDGSMRNGEWYAEHVGDLRRRFPRLRVAIIHVWAPEEEVMKRAVRRGLTTGRVIPPSVLRDTIRAVPRSVEMLAPLADYCVRIDNV 378          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A6H5KYQ7_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ7_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 3.060e-119
Identity = 177/218 (81.19%), Postives = 194/218 (88.99%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQDDILQGALRMITPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNVNGAG 654
            RF+EARSLLDY YHSHYTLERQHVQDDILQ ALR   P SLE PWAVFTAGAMGAGKSHVMG+LG+RG+FPM+ FV+VDPD LRR+LPEMEGYVR D GTAG LTHKEAGL+ E+LEETALLQGRNILV+GSMR+G WY+ H+ D RRRFPRLRVAIIHVWAPEEEV+ RAVRRGL TGRVIPP +LR+TI+AVPRSVE LAPLADYCVRIDNV   G
Sbjct:  163 RFKEARSLLDYSYHSHYTLERQHVQDDILQEALRTKRPVSLENPWAVFTAGAMGAGKSHVMGVLGDRGLFPMDDFVRVDPDSLRRKLPEMEGYVRSDPGTAGYLTHKEAGLLGELLEETALLQGRNILVEGSMRNGEWYAEHIRDRRRRFPRLRVAIIHVWAPEEEVMKRAVRRGLTTGRVIPPALLRDTIRAVPRSVEMLAPLADYCVRIDNVGDDG 380          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A7R9WY90_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WY90_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.510e-63
Identity = 113/221 (51.13%), Postives = 138/221 (62.44%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQD----DILQGALRMITPGSL----ERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDN 639
            RF   R  LDYGYHS+YT ERQ +QD    D+L+ A+     G L      PW VFTAGAMGAGKS+ M  L  +  FP+ AFV VDPD +R  LPE   YV  +   AG LT KEAG +AEIL   AL  G+N+L DGS+RD  WY  +   LR+ FP LR AI+H+ AP E VL RA  R L TGRV+P  +L E ++ VPRSV+ L PL DY   ++N
Sbjct:   59 RFSHIRETLDYGYHSNYTFERQKLQDAIISDMLESAIISDNNGQLGTVPTEPWIVFTAGAMGAGKSYTMNKLVGKDRFPLTAFVVVDPDEIRHLLPEFHVYVEENPVLAGELTRKEAGYIAEILTLAALQAGKNVLQDGSLRDSDWYQTYFARLRKDFPSLRQAILHITAPREAVLKRAADRALVTGRVVPEHILEEAMEQVPRSVKILGPLVDYYAELNN 279          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A7S4QXP5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXP5_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.480e-62
Identity = 108/224 (48.21%), Postives = 141/224 (62.95%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQDDILQGALRMI--------TPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNVNG 648
            RF   R  LDY YHS+Y  ERQ +QD I++  L  +        T  +   PW VFTAGAMGAGKS+ +  L + G FP+ AFV VDPD +RR+LPE   +V  +   AG LT KEAG MAEIL    L  G+N++VDGS+RD  WY ++   LRR +  +R+AI+H+ AP + V+ RA  RG  TGRVIP K L   ++ VPRSV+ L PLADY  +++N  G
Sbjct:   48 RFSHIRKTLDYSYHSNYRKERQWLQDTIIEEMLECVEITDINGNTCTTPTEPWLVFTAGAMGAGKSYTINSLVDDGRFPLLAFVLVDPDEIRRQLPEYSYFVEHNPELAGELTRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHIDAPRDAVIQRAKERGEATGRVIPMKTLLMALEQVPRSVKILGPLADYFCKLNNAPG 271          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A7S4QXS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXS9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.180e-61
Identity = 108/224 (48.21%), Postives = 141/224 (62.95%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQDDILQGALRMI--------TPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNVNG 648
            RF   R  LDY YHS+Y  ERQ +QD I++  L  +        T  +   PW VFTAGAMGAGKS+ +  L + G FP+ AFV VDPD +RR+LPE   +V  +   AG LT KEAG MAEIL    L  G+N++VDGS+RD  WY ++   LRR +  +R+AI+H+ AP + V+ RA  RG  TGRVIP K L   ++ VPRSV+ L PLADY  +++N  G
Sbjct:   48 RFSHIRKTLDYSYHSNYRKERQWLQDTIIEEMLECVEITDINGNTCTTPTEPWLVFTAGAMGAGKSYTINSLVDDGRFPLLAFVLVDPDEIRRQLPEYSYFVEHNPELAGELTRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHIDAPRDAVIQRAKERGEATGRVIPMKTLLMALEQVPRSVKILGPLADYFCKLNNAPG 271          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A7S1BFA9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFA9_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.660e-61
Identity = 108/224 (48.21%), Postives = 140/224 (62.50%), Query Frame = 1
Query:    4 FREARSLLDYGYHSHYTLERQHVQDDILQGALRMI--------TPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNVNGA 651
            F E RS LDY YHS+Y  ERQ +QD+I+   L           T  +   PW VFTAGAMGAGK H +  L ER + P++ FV VDPD +R+ LPE + Y++ +   AG LT KEAG + EIL + AL  G+N+LVDGS+RD  WY  +   LR  +P LR+AI+HV AP E VL RA +RG  TGR IP   L   +  VP++V+ L+PL+DY   +DN  GA
Sbjct:   26 FAEIRSTLDYTYHSNYAFERQRLQDEIISSMLHSASIVDVNGDTCTTPTEPWLVFTAGAMGAGKGHTIRNLVERKLLPLQGFVVVDPDEVRQFLPEYKIYIKENPMMAGELTRKEAGFICEILTQAALQSGKNVLVDGSLRDSDWYIQYFAQLRADYPVLRLAILHVTAPREAVLERAQKRGEMTGRKIPIATLEMAMDQVPKAVQHLSPLSDYFCELDNSPGA 249          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A7S2EVP6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVP6_TRICV)

HSP 1 Score: 212 bits (540), Expect = 5.620e-61
Identity = 112/220 (50.91%), Postives = 137/220 (62.27%), Query Frame = 1
Query:    4 FREARSLLDYGYHSHYTLERQHVQDDILQGALRMITPGSLE--------RPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDN 639
            +   R  LDY YH +Y  ERQ +QD I++ AL  I    +          PW VFTAGAMGAGK HV+  L   G FP+ AFV+VDPD +RR LPE   YV  D  TAG LTHKEAG ++EIL   AL  G+N+LVDGS+RD  WY  +  DLR+R P  R+AI+HV AP E V  RA  RG +TGR++P + L   ++ VPRSVE L   ADY   IDN
Sbjct:   77 YAHLRRTLDYTYHDNYRPERQWLQDAIIEDALETIALTDVNGDVCTTPTEPWTVFTAGAMGAGKGHVVDHLVREGYFPLLAFVKVDPDDIRRHLPEFRSYVEADPLTAGRLTHKEAGYVSEILTLAALQAGKNVLVDGSLRDAEWYGRYFDDLRKRHPNNRIAILHVTAPRELVFERAAERGKRTGRMVPEETLTAALEQVPRSVEILKRKADYFCEIDN 296          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A448ZLW3_9STRA (Zeta_toxin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLW3_9STRA)

HSP 1 Score: 202 bits (513), Expect = 7.070e-61
Identity = 109/221 (49.32%), Postives = 141/221 (63.80%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQD----DILQGALRMITPGSL----ERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDN 639
            ++   R  LDY YHS+YT ERQ + D    D+L  A      G++    + PW VFTAGAMGAGKSH M +L E+  FP+ AFV VDPD++RR LPE   YV ++    G LT KEAG +AE+L   AL  G+N+L DGS+RD  WY +    LR   P++R AIIHV AP++ +L RA  R L TGRV+P ++L + IQ VP+SV+ LAPL DY   I N
Sbjct:    6 KYSHIRRTLDYSYHSNYTFERQKLHDAIITDMLNEAYISDEDGNVGLAAKDPWIVFTAGAMGAGKSHTMLVLVEQERFPLPAFVIVDPDQIRRLLPEYHMYVAKNPEMVGKLTQKEAGYIAEVLTLAALQSGKNVLQDGSLRDHGWYKVLFHRLREAHPQVRQAIIHVTAPKQAILDRAAERALLTGRVVPEEILEQAIQEVPKSVKILAPLVDYYAEISN 226          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A1Z5JA71_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA71_FISSO)

HSP 1 Score: 208 bits (530), Expect = 3.000e-60
Identity = 111/226 (49.12%), Postives = 147/226 (65.04%), Query Frame = 1
Query:    1 RFREARSLLDYGYHSHYTLERQHVQDDILQGAL-----------RMITPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDNVN 645
            RF   R+ LDY YH +YT ERQ +QD I+   L           +  TP     PW VFTAGAMG+GKS+ M  L  RG+FP+ AFV+VDPD LRR LPE   Y+++    AG+LT KEAGL++EIL   AL +G+N+LVDGS+RD  WY  +   LR  +P +R+AIIHV AP E VL+RA +R   TGR++P ++L   I  VP+SV+ LAPL +Y V ++N +
Sbjct:  334 RFAHIRATLDYSYHRNYTFERQMLQDAIISEFLDATYFTDKHGDKCTTP---TEPWVVFTAGAMGSGKSYTMRHLVNRGLFPLLAFVRVDPDELRRYLPEFHLYIQQSPEDAGTLTRKEAGLISEILTLAALQEGKNVLVDGSLRDAPWYEEYFEKLRGTYPHVRLAIIHVSAPREMVLARASKRAHSTGRIVPEELLLAAIDEVPKSVKKLAPLVNYHVELENAD 556          
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Match: A0A813JXH8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JXH8_POLGL)

HSP 1 Score: 206 bits (523), Expect = 9.230e-60
Identity = 105/212 (49.53%), Postives = 141/212 (66.51%), Query Frame = 1
Query:    4 FREARSLLDYGYHSHYTLERQHVQDDILQGALRMITPGSLERPWAVFTAGAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGTAGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRFPRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEALAPLADYCVRIDN 639
            F + R  LD+ YH  Y+LERQ +QD++L+  L    P   E PW VFTAGAMGAGKSH++  +  +G FP+  FVQ+D DR R +LPE +GYV+RD  TAGSLTHKE+G  AEI +E AL  G+N+  DGS+RD  WYS     +RR  P+ R+AI+HV A  + + +RA  R + TGR +P + LR + + VP+SV  L PL D+  RI+N
Sbjct:  111 FADIRGQLDFSYHGCYSLERQALQDEMLKDVLGGAVPH--ENPWIVFTAGAMGAGKSHMVRWMSHKGYFPVADFVQIDLDRFRMQLPEWKGYVKRDPLTAGSLTHKESGYCAEIAQEAALRAGKNVWEDGSLRDADWYSALFRRIRREHPQYRIAILHVTASFDTLHARANARAVTTGRQVPEQALRASFEEVPKSVLKLLPLTDFWARIEN 320          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig86.17633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS0_ECTSI1.260e-12787.85Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KYQ7_9PHAE3.060e-11981.19Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A7R9WY90_9STRA3.510e-6351.13Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S4QXP5_9STRA1.480e-6248.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QXS9_9STRA2.180e-6148.21Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1BFA9_9STRA3.660e-6148.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2EVP6_TRICV5.620e-6150.91Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A448ZLW3_9STRA7.070e-6149.32Zeta_toxin domain-containing protein n=1 Tax=Pseud... [more]
A0A1Z5JA71_FISSO3.000e-6049.12Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A813JXH8_POLGL9.230e-6049.53Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig86contigL-elsbetiae_contig86:27358..31632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue5.7e-103
Seed eggNOG ortholog2880.D7FLS0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zeta toxin
EggNOG OGs2BIBQ@1,2S1DY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size745
Cds size744
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig86.17633.1prot_L-elsbetiae_contig86.17633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig86 27358..31631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816942.2477772-CDS-L-elsbetiae_contig86:27357..274261622816942.2477772-CDS-L-elsbetiae_contig86:27357..27426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 27358..27426 +
1691683929.337525-CDS-L-elsbetiae_contig86:27357..274261691683929.337525-CDS-L-elsbetiae_contig86:27357..27426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 27358..27426 +
1622816942.2638154-CDS-L-elsbetiae_contig86:28330..284201622816942.2638154-CDS-L-elsbetiae_contig86:28330..28420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 28331..28420 +
1691683929.3484728-CDS-L-elsbetiae_contig86:28330..284201691683929.3484728-CDS-L-elsbetiae_contig86:28330..28420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 28331..28420 +
1622816942.2744288-CDS-L-elsbetiae_contig86:29587..297521622816942.2744288-CDS-L-elsbetiae_contig86:29587..29752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 29588..29752 +
1691683929.3574817-CDS-L-elsbetiae_contig86:29587..297521691683929.3574817-CDS-L-elsbetiae_contig86:29587..29752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 29588..29752 +
1622816942.286829-CDS-L-elsbetiae_contig86:30204..303571622816942.286829-CDS-L-elsbetiae_contig86:30204..30357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 30205..30357 +
1691683929.3670452-CDS-L-elsbetiae_contig86:30204..303571691683929.3670452-CDS-L-elsbetiae_contig86:30204..30357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 30205..30357 +
1622816942.2983572-CDS-L-elsbetiae_contig86:31364..316311622816942.2983572-CDS-L-elsbetiae_contig86:31364..31631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 31365..31631 +
1691683929.3784158-CDS-L-elsbetiae_contig86:31364..316311691683929.3784158-CDS-L-elsbetiae_contig86:31364..31631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig86 31365..31631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig86.17633.1

>prot_L-elsbetiae_contig86.17633.1 ID=prot_L-elsbetiae_contig86.17633.1|Name=mRNA_L-elsbetiae_contig86.17633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
RFREARSLLDYGYHSHYTLERQHVQDDILQGALRMITPGSLERPWAVFTA
GAMGAGKSHVMGLLGERGIFPMEAFVQVDPDRLRRELPEMEGYVRRDSGT
AGSLTHKEAGLMAEILEETALLQGRNILVDGSMRDGAWYSLHVGDLRRRF
PRLRVAIIHVWAPEEEVLSRAVRRGLQTGRVIPPKVLRETIQAVPRSVEA
LAPLADYCVRIDNVNGAGVGDADAGVGRGDRRKDLEHQCQQDQCQQQQ
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mRNA from alignment at L-elsbetiae_contig86:27358..31632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig86.17633.1 ID=mRNA_L-elsbetiae_contig86.17633.1|Name=mRNA_L-elsbetiae_contig86.17633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4275bp|location=Sequence derived from alignment at L-elsbetiae_contig86:27358..31632+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTTCGAGAGGCTCGGTCTTTGTTGGACTACGGCTACCACTCACACTA CACCCTGGAGCGTCAGCACGTGAGTTGACTGCTGCTGCTGCTGCTGTTGC TGCTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTG CTGCTGCTGCTGTTGTTGGTGTTGGAGTTGCTTGAGGCATCATTGTTTTC CGAGACCCTTGGGCCGGTGGCCACAGACGTGCTCACAAGAGCCGTAGTCT AGTGATGGAGCCGCGAAACGTAAATTGAAAAAAGGCACTCTGTGCACAAG GTTTTGAGATATTCAAACATTTAACACGTAAACCAGACCTGTGTGTTTGT GCAACTGAGCTACCGCGATGATCATCGCACCGCACCCGGGAGAGGCAGGC CTCTGAAGCAGATTCTGACACTCAAGCCTGTTTTTGATTTTAGCGTGTTT GGGTTGTGTGTGTGTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCT ATCCAGGACACCTCCGTGCGGGTTTATTTTGCCCGCGCCTATTTTGTCCT AGTCTATGTAGCATGCCGATCGTGTAGCCGGCAGATGAAAGTCTCTCTCT TTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTCTCCTTGGGGCA AGAAAATAAAAGTATGTCTCCTATCGGTTGGGTGGTTACGCCACGGATTG GTGCTGGCGCTGCGTGCATACCTGTAGCAGCTGAAAATCCTGAATTGTAG CTCTGGTTCTCTCTATTTTTTGTCTAGCAAAAAACAGATGAAATATTTAG CAACAAAAATAACCCTAAATAACCCTAACCCTAACCAACAACAATTGATA ATTGAATGATTTTGAAACACCTCGGTATCCCAAACGAAAATTTAGGTACT CTAGTCCACGGAAATTTAAATGTAAAAAATAATCGCACGGCGGTGTTCCG CATGCCCTTGGTTTGGCGCGCAGGTGCAGGACGATATTCTGCAGGGGGCG CTGAGGATGATAACCCCAGGGTCTCTAGAGAGACCTTGGGCGGTGTTTAC GGCGGGCGCAATGGTGAGAACGAGGGAGAGATCACGAATGAGATTGTTAC GGGAACGATACTATGAATGAGATTGAGACCGAGTTCGATAACAATATTCA AGATTCTGGAATGAGGTCAGGCTTAAAAATGGAAATGCGATGGTAGCAAT ATTCTCGTAAATACTACCCGCGAGCACCCCCCTTGCTCCTTAGGTAAGGT GTACGGTTAGGGTTCGGGCATCATGGCAAAAACACAGCGAATAGCAATAC AATAGTTGCAGGATAGCCAAGTTTGGAGCGTTTGTGAGCTAAACCGCCGG CGGGCCGTGAGGGCGGCGGAGAATGGAGAAATGCGACGAATCAACCTTTT GTTATTTCTCCCCCGAAAGGCGTGCTTTCCGTCAGTTTTTTTTACGACCG AGGCACCGCGGACAGGAATCACCAGGGGGGTGTCTGTTGCTGCCCGTCGA GCTGGCTCTCCGAACTCAGCGCAGCGCAAATGCCATGCCATGCCGCGCCC CGGAACAACAGCGGCAGGCAGCAAGAGCAGTTATCTGCAATACCCAACGC GATGATATGTACTCGTGAAGAACATACCCGCGGCAAAAGGCATCATAGTT TTCAAAGGAGCCCCTTTCCCGACACTGTTCCTCCGCTTCTGCCTGCGATT CGAGTAGAGTACAAGGCTGGAGCACGGGTTGAAACAACACACTCTCCGTG TTCACAAAACAGGCCCATTTTTTTTTTTTTGTGTCACGCCAACAGTGGCA AAAGCTTTACGAAGTATGTATGTATGCGATGAGCTCGTAACTTCTGTACA CCCAAGACATATTTCTTGGCCGGTAAATCAACTCAGATGCTGGCGTGCCC CCAGCCCACAGAAGCACAGGCACGCGTAACAACAGCTTCGAATCGACAGC CGCCGTGTCGAAGGACTGAACAAGCTGACCACTGGTGGATGTCGTGAACT ATGGTGGGGTCACGCCACGCGCTTCAATATCTTAAAAAAAAACGAAACTG TCAGCCGTTTCAAAGGACTACACTTTGGCAAGATGAACTCGTGTCAAGGA GCCCACCGAGCACTGGAAATAAATGTGAAGAAAAAAAAACAAAAACCAAC AACAACAACAACAACGACAACCACATGCTGGGCGCTTGTTTGAGGTAAAA CTATAATTATGGTGTTTTTCTCAATGCCAGGGTGCGGGCAAGAGTCACGT CATGGGACTGCTCGGGGAGCGAGGCATATTCCCGATGGAGGCTTTCGTGC AGGTGGACCCGGATCGCTTGCGGAGGGAGTTGCCCGAGATGGAGGGATAC GTCAGGCGGGACTCGGGGACGGCCGGCTCCCTGACGCACAAGGAGGTAAG AGAAGATATGGCGGGACCGGGGGGGGTTACCTGTGATCCGTAGTAGATGT GCATAGGAGATTTGGGAGATCTTGTCGGTGCTGGTAGGCACACACGTCTT GTTTTGAGAATGGAAGGTACTGCTGTTGTAGCAGTCACAACGCCACGCGG TTTTAGCAGTAGCAAGAGAAAACAGCAGCAGGAGCGGCAGCAACGGCAGC AACAGCGGCAGCAACAGCAGCAGCAGCAGCAGCAGACAAGGACAAGAAAC GACGGCACCGTGAATGGTCACCCGAGGTGACGTTGAGGAGCTGTTGAATG CTGCCGGTGCGTAAGAAATCTTGATTGATGCCAACCGCAACCGAGACCTC CTTTGATCGAGACTATTCTGTTTTCCTCTTTTTTTTTTGTCTGCATGTGT GTGTGTGTGCGGATACGCATTCATTCATGTGTAATACGTTTCGCCAGGCC GGGCTGATGGCGGAGATCCTGGAAGAGACAGCTCTGCTGCAGGGGAGGAA CATCCTTGTGGACGGGTCGATGAGGGACGGCGCTTGGTACAGCCTTCACG TCGGGGACCTGAGGAGGCGGTTTCCTCGGCTGAGGGTGGCGATTATCCAC GTGAGTGACCGTGCCCTGTGTTGACCAAGATAGAGGGGGGATAATGTCTA GGGGCGGGGGGGGGTCCTCAGGTGGCACAGAACAATCTTCGTTAGATACC AGGAGGGGGTACGAAGCGGCACATAAAAAGGTGGTCCGCCCACCTACAGT ACCAGCCGTCACGAACATTTGCCACGGACGCCTGCGACAGATTTTTGTGG AGAACTTTTGGCAGTATCCTTGTGACAACCCTATAATTTTTCCTTGGAGG TGAGCGTTAAGCTTCTCGCCTGTGCCTGCTCCGTGGGTAAACTATTTGCT ATTTTTCGGAATATCGGCATACCCAACTGTCGTCGTTATGGTGTGGCAGC GAGAGGCCGCGTCTGGCCGATTTTTTCATGTCATCGCCCCTTCTCTTTTA CGGTTTCCGATCTATCTCATCTCATCTCGGGAAAATGTACATAATACTGC GGTAGCATACATACATGCTAGGTTAGTTCCTCCACGACGCCTCCCGACAG CTATATGGCTTGTCTAGATGTCGGCCAGACTCCATGTTTTACATACCCCC AAGTTTTTCGCCTTGTTGGCTGAACTGCTGCTTTGCTGCTGCTGGTGTTG CTGCTGGTGTTGTTGCTGCTGGTGTTGCTGCTGCTTTGCTGCTGCTGGTG TTGAAGCTGGTGCTGCTGCTGGTGCTGCTGCTGCTGTTGAACGAAAATAG CCAACCCAAACGTAACCCACCCTAGTTCGCACGAGAGCAATTTCCTCCGT GTGCGGGGCCAGCCCTGAAAGAGGTCCAAGCATGCATCTTCCGGATAAAT CTGTTCCTGTTGATTCTTGTTATAATTTTTGTTGCTGTTTTTTTTTTTAC ACTTATTTCCAGTGCTCGATAGGCTCCTTGTCGTGAGGACATCTTGCCAG AGTACTGATCCGTGGTCACACAGAAGGGTTATTCCTTTCCCCAAAAGGCC CCCACTTACCCCGGTTGGTTCTTGCTATTTTTTGTTATTGTTGGTGCCGT TTTTCAGGTCTGGGCCCCCGAAGAAGAGGTTCTGTCGCGAGCCGTACGGC GGGGTCTCCAGACAGGCCGCGTCATTCCGCCGAAGGTTCTGAGGGAGACC ATCCAGGCCGTGCCCCGGTCGGTCGAGGCCCTGGCGCCGCTCGCCGACTA CTGCGTTCGGATCGACAACGTCAATGGCGCCGGCGTTGGCGATGCTGACG CGGGGGTTGGCCGTGGTGACCGCCGGAAGGACCTGGAGCACCAATGCCAA CAGGACCAGTGCCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig86:27358..31632+

>mRNA_L-elsbetiae_contig86.17633.1 ID=mRNA_L-elsbetiae_contig86.17633.1|Name=mRNA_L-elsbetiae_contig86.17633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig86:27358..31632+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTTCGAGAGGCTCGGTCTTTGTTGGACTACGGCTACCACTCACACTA
CACCCTGGAGCGTCAGCACAGGTTTCGAGAGGCTCGGTCTTTGTTGGACT
ACGGCTACCACTCACACTACACCCTGGAGCGTCAGCACGTGCAGGACGAT
ATTCTGCAGGGGGCGCTGAGGATGATAACCCCAGGGTCTCTAGAGAGACC
TTGGGCGGTGTTTACGGCGGGCGCAATGGTGCAGGACGATATTCTGCAGG
GGGCGCTGAGGATGATAACCCCAGGGTCTCTAGAGAGACCTTGGGCGGTG
TTTACGGCGGGCGCAATGGGTGCGGGCAAGAGTCACGTCATGGGACTGCT
CGGGGAGCGAGGCATATTCCCGATGGAGGCTTTCGTGCAGGTGGACCCGG
ATCGCTTGCGGAGGGAGTTGCCCGAGATGGAGGGATACGTCAGGCGGGAC
TCGGGGACGGCCGGCTCCCTGACGCACAAGGAGGGTGCGGGCAAGAGTCA
CGTCATGGGACTGCTCGGGGAGCGAGGCATATTCCCGATGGAGGCTTTCG
TGCAGGTGGACCCGGATCGCTTGCGGAGGGAGTTGCCCGAGATGGAGGGA
TACGTCAGGCGGGACTCGGGGACGGCCGGCTCCCTGACGCACAAGGAGGC
CGGGCTGATGGCGGAGATCCTGGAAGAGACAGCTCTGCTGCAGGGGAGGA
ACATCCTTGTGGACGGGTCGATGAGGGACGGCGCTTGGTACAGCCTTCAC
GTCGGGGACCTGAGGAGGCGGTTTCCTCGGCTGAGGGTGGCGATTATCCA
CGCCGGGCTGATGGCGGAGATCCTGGAAGAGACAGCTCTGCTGCAGGGGA
GGAACATCCTTGTGGACGGGTCGATGAGGGACGGCGCTTGGTACAGCCTT
CACGTCGGGGACCTGAGGAGGCGGTTTCCTCGGCTGAGGGTGGCGATTAT
CCACGTCTGGGCCCCCGAAGAAGAGGTTCTGTCGCGAGCCGTACGGCGGG
GTCTCCAGACAGGCCGCGTCATTCCGCCGAAGGTTCTGAGGGAGACCATC
CAGGCCGTGCCCCGGTCGGTCGAGGCCCTGGCGCCGCTCGCCGACTACTG
CGTTCGGATCGACAACGTCAATGGCGCCGGCGTTGGCGATGCTGACGCGG
GGGTTGGCCGTGGTGACCGCCGGAAGGACCTGGAGCACCAATGCCAACAG
GACCAGTGCCAGCAGCAGCAGGTCTGGGCCCCCGAAGAAGAGGTTCTGTC
GCGAGCCGTACGGCGGGGTCTCCAGACAGGCCGCGTCATTCCGCCGAAGG
TTCTGAGGGAGACCATCCAGGCCGTGCCCCGGTCGGTCGAGGCCCTGGCG
CCGCTCGCCGACTACTGCGTTCGGATCGACAACGTCAATGGCGCCGGCGT
TGGCGATGCTGACGCGGGGGTTGGCCGTGGTGACCGCCGGAAGGACCTGG
AGCACCAATGCCAACAGGACCAGTGCCAGCAGCAGCAG
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