mRNA_L-elsbetiae_contig859.17625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig859.17625.1
Unique NamemRNA_L-elsbetiae_contig859.17625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A6H5L5R7_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5R7_9PHAE)

HSP 1 Score: 482 bits (1241), Expect = 1.870e-157
Identity = 444/748 (59.36%), Postives = 477/748 (63.77%), Query Frame = 1 
Query:    7 MENGLLDRRESFDLLDNLDFGIMELGMSDEEPSDDVDSDVHVPTAAAKAVPAPMDSDRHRNRKVYGEGGSA-----------TAAIATVSPXXXXXXXXXXXXXXXXXXXXXXXARVS---------PFRNSGKSEQDEDXXXXXXXXXMRTAATVAVAPASSVGQG-----QDGSEKIPTSAKA------------GSEGRQDSEQEIDLAGEGSGHFDVHEFAFDATFDDEYAEQEDD-VDMKDGSGHMPSSSSAITSAXXXXXXXXXXXXXXXXVSTAVGPLRVTGSTSKDKLKL-APPNLISQDG--------------------ID-------------------------GVGGR--GRGRRGGGVVMSDDEGGIGGKGVHGDVDAPGLGSFSTMGAVIGDFSPQFKFSFTDDIHHHLDLGSGLKGGGDGGRGGGWLPRRLCRDELRDLESFSEHGGPDQHGRGGLAHDDMHMLMGLSASRAQQLLSRGGPAVVKSEVLSSSPSRLGATRSSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGL-----SGYATNHYASGAAYNGRHTGPYATAE-AAADGEGAEVGAAASAVQASSRPQGSXXXXXXXXXXXXXXXXXXXXXSLYGRDGAXXXXXAIPTHHHAARGRPVVSGMEIMVGGGPRMGMAGG---ADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 1965
            MENGLLDRRESFDLLDNLDFGIMELGMSDEEPS+      H    +A   P P   D+H+      + GS+           TA+ ATV  X   XXXXXXXXXXXXXXXXXXX   +          FRNSG SE+                     AP SSVG G     Q+G + +     A               G QDSE E+DLAG+GSG FD+ E AFDATFD +Y EQEDD VDMKDGSG +PS        XXXXXXXXX       VSTAVGPLRV GSTSK+KL    PP LIS  G                    ID                         G GG   G G  G GVVMSDDEGG  G+  HGD DAPGLGSFSTMGAVIGDFSPQFKFSFTDDIH  LDLG GLK                  DELRDLESFSEHG PD HGRGG        ++ LSASRAQQLLSRGGPAVVKSE LS+SPS+LGATRS TAAXXXXXXXXXXXXXXXXXXXXXXXX        SG++TNHYASGAA++GRHTGPYATAE AAA GE A  G + S V   +RP GS XXXXXXXXXXXXXXXXXXXX        XXX    PT H AARGRPVVSGM IMVGGGPR+GM  G   ADGE +KFVGAYSPE+RRQRIERFL+KREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA
Sbjct:    1 MENGLLDRRESFDLLDNLDFGIMELGMSDEEPSN------HSGAESAAVEPVPDGPDQHK-----AQAGSSKPTVPPPPLPTTASAATVKAXERGXXXXXXXXXXXXXXXXXXXXXXAVVTTGVITRAFRNSGGSEEG------------------GPAPGSSVGGGEKVSTQEGGDGVQGGGVAMRSXXXXXXXXXXXNGAQDSEHEVDLAGDGSGQFDIGEMAFDATFDHDYGEQEDDDVDMKDGSGQLPSXXXXXXXXXXXXXXXXX-------VSTAVGPLRVVGSTSKNKLSTRVPPKLISSRGPHRHDXXXXXXXXXGRTGGEIDVGDQSXXXXXXXXXXXXXSDAERPEGGGGSHAGSGETGPGVVMSDDEGG--GREGHGDPDAPGLGSFSTMGAVIGDFSPQFKFSFTDDIH--LDLGGGLK------------------DELRDLESFSEHG-PDPHGRGG-------EMLALSASRAQQLLSRGGPAVVKSEALSTSPSQLGATRSGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFSTNHYASGAAFHGRHTGPYATAEDAAAGGEAAGAGPS-SPVSVQTRPHGSSXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXGGVTPTPH-AARGRPVVSGMGIMVGGGPRVGMGAGGAGADGE-KKFVGAYSPEARRQRIERFLEKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 678
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: D8LRP7_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP7_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 3.200e-146
Identity = 396/690 (57.39%), Postives = 420/690 (60.87%), Query Frame = 1 
Query:    1 ALMENGLLDRRESFDLLDNLDFGIMELGMSDEEPSDDVDSDVHVPTAAAKAVPAPMDSDRHRNRKVYGEGGSATAAIATVSPXXXXXXXXXXXXXXXXXXXXXXXARVSPFRNSGKSEQDEDXXXXXXXXXMRTAATVAVAPASSVGQGQDGSEKIPTSAKAGS-----------------EGRQDSEQEIDLAGEGSGHFDVHEFAFDATFDDEYAEQEDD-VDMKDGSGHMPSSSSAITSAXXXXXXXXXXXXXXXXVSTAVGPLRVTGSTSKDKLKL-APPNLISQDGIDGVGGRGRG---RRGGGVVMSDDEGGIGGKGVHGDVDAPGLGSFSTMGAVIGDFSPQFKFSFTDDIHHHLDLGSGLKGGGDGGRGGGWLPRRLCRDELRDLESFSEHGGPDQHGRGGLAHDDMHMLMGLSASRAQQLLSRGGPAVVKSEVLSSSPSRLGATRSSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGLS------GYATNHYASGAAYNGRH----TGPYATAEAAADGEGAEVGAAASAVQASSRPQGSXXXXXXXXXXXXXXXXXXXXXSLYGRDGAXXXXXAIPTHHHAARGRPVVSGMEIMVGGGPRMGMAGG---ADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 1965
            ALMENGLLDRRESFDLLDNLDFGIMELGMSDEEPS       H    +A   P P   D H             A   +  P                        +   FRNSG SE+                     APASSVG G+  S +       G                   G QDSE E+DLAGEGSG FD+ E AFDATFD +Y EQEDD VDMKDGSG +PS        XXXXXXXXX       VSTAVGPLRV GSTSK KL    PPN   +   +G GG   G     G GVVMSDDEGG  G+  HGD DAPGLGSFSTMGAVIGDFSPQFKFSFTDDIH  LDLG GLK                  DELRDLESFSEHG PD HGRGG        ++ LSASRAQQLLSRGGPAVVKSEVLS+SPS+LGATRS TA XXXXXXXXXXXXXXXXXXXXXXXX          G++TNHYAS             GP                  +S V   +RP GSXXXXXXXXXXXXXXXXXXXXX        XXX    PT H A RGRPVVSGM IMVGGGPR+GM  G   ADGE +KFVGAYSPE+RRQRIERFL KREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA
Sbjct:  121 ALMENGLLDRRESFDLLDNLDFGIMELGMSDEEPSS------HSGAESAAVEPVPDGPDEHE------------AQAGSSKPTVPPPPLPTTASAATDKAAVMTGVKTRAFRNSGASEEG------------------GPAPASSVGGGEKVSTQEGGDGVQGXXXXXXXXXXXXXXXXXXNGAQDSEHEVDLAGEGSGQFDIGEMAFDATFDHDYGEQEDDDVDMKDGSGQLPSXXXXXXXXXXXXXXXXX-------VSTAVGPLRVVGSTSKTKLSTRVPPNDAERS--EGGGGSHAGCSRETGPGVVMSDDEGG--GREGHGDADAPGLGSFSTMGAVIGDFSPQFKFSFTDDIH--LDLGGGLK------------------DELRDLESFSEHG-PDPHGRGG-------EMLALSASRAQQLLSRGGPAVVKSEVLSTSPSQLGATRSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSTNHYASXXXXXXXXXXXGAGP------------------SSPVSVQTRPHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVTPTPH-APRGRPVVSGMGIMVGGGPRVGMGAGGAGADGE-KKFVGAYSPEARRQRIERFLDKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 715
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A835ZB50_9STRA (CCT motif-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB50_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.050e-24
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 
Query: 1771 FVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM 1956
             VGAYSPESRR+R+ERFL+KR+ RVWTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVM
Sbjct:    2 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVM 63
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A7S2WW68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW68_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.280e-24
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 
Query: 1720 GGPRMGMAG--GADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            G P  G+ G  G D E + F+GAYSPE+RR+RI+RFL+KR+KRVWTK VKYDVRKNFAD+RMRVKGRFVKKEDE LLRE+M+
Sbjct:  178 GAPPTGVPGATGGDPERKHFIGAYSPEARRKRIQRFLEKRKKRVWTKKVKYDVRKNFADSRMRVKGRFVKKEDEELLRELMS 259
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A836CR31_9STRA (CCT motif-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR31_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.820e-24
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1 
Query: 1771 FVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
             VGAYSPESRR+R++RF++KR  R+WTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVMA
Sbjct:    1 MVGAYSPESRRRRVQRFMEKRHHRIWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMA 63
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: D0NBT0_PHYIT (CCT domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NBT0_PHYIT)

HSP 1 Score: 112 bits (279), Expect = 6.640e-23
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1 
Query: 1726 PRMGMAGGADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            P MG+  G DG+ + FVGAYSP+SRR+RIE+FL KR+KRVW K VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+++
Sbjct:  294 PFMGVDKGKDGQKQNFVGAYSPDSRRKRIEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLS 371
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A7S2WWC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWC9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.480e-23
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 
Query: 1720 GGPRMGMAG--GADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            G P  G+ G  G D E + F+GAYSPE+RR+RI+RFL+KR+KRVWTK VKYDVRKNFAD+RMRVKGRFVKKEDE LLRE+M+
Sbjct:  391 GAPPTGVPGATGGDPERKHFIGAYSPEARRKRIQRFLEKRKKRVWTKKVKYDVRKNFADSRMRVKGRFVKKEDEELLRELMS 472
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: G5A6V8_PHYSP (CCT domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A6V8_PHYSP)

HSP 1 Score: 108 bits (269), Expect = 2.080e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1 
Query: 1747 GADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            G DG+ + FVGAYSP+SRR+RIE+FL KR+KRVW K VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+++
Sbjct:  200 GKDGQKQNFVGAYSPDSRRKRIEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLS 270
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: A0A067CEV7_SAPPC (CCT domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CEV7_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 4.230e-22
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1 
Query: 1699 GMEIMVGGGPRMGMAGGA-DGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            G    +GG   +G+ GG  D E + FVGAYSPESRR+R+E+FL KR+KRVW K VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+++
Sbjct:  271 GASAFIGG--MVGLGGGLNDSEKKAFVGAYSPESRRKRVEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLS 356
[Close]
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Match: M4BU16_HYAAE (CCT domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BU16_HYAAE)

HSP 1 Score: 108 bits (270), Expect = 1.290e-21
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1 
Query: 1741 AGGADGEARKFVGAYSPESRRQRIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 1959
            A G DG+ + FVGAYSP+SRR+RIE+FL KR+KRVW K VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+++
Sbjct:  319 AKGKDGQKQNFVGAYSPDSRRKRIEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLS 391
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig859.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5R7_9PHAE1.870e-15759.36CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRP7_ECTSI3.200e-14657.39CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZB50_9STRA2.050e-2487.10CCT motif-domain-containing protein (Fragment) n=1... [more]
A0A7S2WW68_9STRA2.280e-2471.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CR31_9STRA3.820e-2482.54CCT motif-domain-containing protein n=1 Tax=Tribon... [more]
D0NBT0_PHYIT6.640e-2371.79CCT domain-containing protein n=12 Tax=Phytophthor... [more]
A0A7S2WWC9_9STRA7.480e-2371.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G5A6V8_PHYSP2.080e-2274.65CCT domain-containing protein n=1 Tax=Phytophthora... [more]
A0A067CEV7_SAPPC4.230e-2265.91CCT domain-containing protein n=4 Tax=Saprolegniac... [more]
M4BU16_HYAAE1.290e-2173.97CCT domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig859contigL-elsbetiae_contig859:720..4868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue1.5e-126
Seed eggNOG ortholog2880.D8LRP7
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009791,GO:0009889,GO:0009908,GO:0009909,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048367,GO:0048580,GO:0048608,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0090567,GO:0104004,GO:0140110,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2001141
EggNOG free text desc.CCT motif
EggNOG OGs2CXHC@1,2RXHA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCCT domain domain protein
Ec32 orthologEc-12_000590.1
Exons6
Model size2327
Cds size1962
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig859.17625.1prot_L-elsbetiae_contig859.17625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig859 726..4509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.7922611-UTR-L-elsbetiae_contig859:719..7251622816940.7922611-UTR-L-elsbetiae_contig859:719..725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig859 720..725 +
1691683928.4623396-UTR-L-elsbetiae_contig859:719..7251691683928.4623396-UTR-L-elsbetiae_contig859:719..725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig859 720..725 +
1622816940.8715868-UTR-L-elsbetiae_contig859:4509..48681622816940.8715868-UTR-L-elsbetiae_contig859:4509..4868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig859 4510..4868 +
1691683928.5316823-UTR-L-elsbetiae_contig859:4509..48681691683928.5316823-UTR-L-elsbetiae_contig859:4509..4868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig859 4510..4868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.8049195-CDS-L-elsbetiae_contig859:725..12441622816940.8049195-CDS-L-elsbetiae_contig859:725..1244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 726..1244 +
1691683928.4744215-CDS-L-elsbetiae_contig859:725..12441691683928.4744215-CDS-L-elsbetiae_contig859:725..1244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 726..1244 +
1622816940.8163915-CDS-L-elsbetiae_contig859:1602..16861622816940.8163915-CDS-L-elsbetiae_contig859:1602..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 1603..1686 +
1691683928.482938-CDS-L-elsbetiae_contig859:1602..16861691683928.482938-CDS-L-elsbetiae_contig859:1602..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 1603..1686 +
1622816940.8279293-CDS-L-elsbetiae_contig859:2087..22841622816940.8279293-CDS-L-elsbetiae_contig859:2087..2284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2088..2284 +
1691683928.491212-CDS-L-elsbetiae_contig859:2087..22841691683928.491212-CDS-L-elsbetiae_contig859:2087..2284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2088..2284 +
1622816940.8405063-CDS-L-elsbetiae_contig859:2464..27531622816940.8405063-CDS-L-elsbetiae_contig859:2464..2753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2465..2753 +
1691683928.503018-CDS-L-elsbetiae_contig859:2464..27531691683928.503018-CDS-L-elsbetiae_contig859:2464..2753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2465..2753 +
1622816940.8507433-CDS-L-elsbetiae_contig859:2988..37351622816940.8507433-CDS-L-elsbetiae_contig859:2988..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2989..3735 +
1691683928.5123923-CDS-L-elsbetiae_contig859:2988..37351691683928.5123923-CDS-L-elsbetiae_contig859:2988..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 2989..3735 +
1622816940.8606734-CDS-L-elsbetiae_contig859:4383..45091622816940.8606734-CDS-L-elsbetiae_contig859:4383..4509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 4384..4509 +
1691683928.5220246-CDS-L-elsbetiae_contig859:4383..45091691683928.5220246-CDS-L-elsbetiae_contig859:4383..4509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig859 4384..4509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig859.17625.1

>prot_L-elsbetiae_contig859.17625.1 ID=prot_L-elsbetiae_contig859.17625.1|Name=mRNA_L-elsbetiae_contig859.17625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=654bp
MENGLLDRRESFDLLDNLDFGIMELGMSDEEPSDDVDSDVHVPTAAAKAV
PAPMDSDRHRNRKVYGEGGSATAAIATVSPPVVAAAAAAAAATPASEKAA
SAAARVSPFRNSGKSEQDEDAAVAVGAGSMRTAATVAVAPASSVGQGQDG
SEKIPTSAKAGSEGRQDSEQEIDLAGEGSGHFDVHEFAFDATFDDEYAEQ
EDDVDMKDGSGHMPSSSSAITSAGGTGAASVAAAAAAAAVSTAVGPLRVT
GSTSKDKLKLAPPNLISQDGIDGVGGRGRGRRGGGVVMSDDEGGIGGKGV
HGDVDAPGLGSFSTMGAVIGDFSPQFKFSFTDDIHHHLDLGSGLKGGGDG
GRGGGWLPRRLCRDELRDLESFSEHGGPDQHGRGGLAHDDMHMLMGLSAS
RAQQLLSRGGPAVVKSEVLSSSPSRLGATRSSTAAAASAKAAAAAGATDE
GEEGSGSGTGGLSGYATNHYASGAAYNGRHTGPYATAEAAADGEGAEVGA
AASAVQASSRPQGSSAAAVAAAAAAAAASGSAQGGSLYGRDGAAAAGAAI
PTHHHAARGRPVVSGMEIMVGGGPRMGMAGGADGEARKFVGAYSPESRRQ
RIERFLQKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM
ACA*
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mRNA from alignment at L-elsbetiae_contig859:720..4868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig859.17625.1 ID=mRNA_L-elsbetiae_contig859.17625.1|Name=mRNA_L-elsbetiae_contig859.17625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4149bp|location=Sequence derived from alignment at L-elsbetiae_contig859:720..4868+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCTGATGGAAAACGGATTGCTGGACCGGCGCGAGTCTTTCGATCTCCT
CGATAACCTTGACTTCGGGATCATGGAGCTTGGTATGTCGGACGAGGAGC
CCTCCGACGACGTTGACTCTGACGTCCACGTACCCACCGCCGCTGCCAAA
GCGGTGCCAGCGCCGATGGACTCCGACCGCCATCGCAATCGCAAAGTTTA
CGGGGAGGGGGGCAGTGCTACAGCAGCTATAGCTACAGTATCCCCTCCTG
TGGTTGCGGCTGCCGCTGCCGCCGCCGCCGCCACCCCCGCTTCCGAAAAA
GCCGCCAGTGCGGCCGCGCGCGTAAGCCCATTCCGAAATAGTGGGAAAAG
CGAACAAGACGAAGATGCCGCTGTTGCCGTTGGCGCTGGCAGTATGAGGA
CAGCAGCAACAGTAGCAGTAGCGCCGGCGTCTTCTGTCGGTCAAGGTCAA
GATGGCTCTGAAAAGATTCCGACGTCGGCGAAGGCAGGGTCAGAGGGTCG
GCAAGACAGCGAGCAAGAGATCGATGTGGGTGTTTGCTGATGCGCTGTTA
TCGCGGTCTGTTGCAGCAGTTGAAATACAGGCTGTTGCTTCGTGGAATGG
TCTAACCCTAACCCTGTCAGGGAGTAGAGGATAGAGAAAGGTTGCCTTCT
GGCGCATACATCTTACCATTTGCACGTCCTACCTATATTTAGGAGGAGGA
GACTTTGTGTGTTTGATGGTCATATCACAAGTCACATGTATCATACGTTT
CGTTCTGCACGTTATATCGTGTACTGGCACCTGATATCATGTCTCATACT
CCGGAGTACCATGTATCATGTCCTGTGTAAAGCCTATGCGTTTATCTGAC
CGCTGCTAGTTTCTATTTTATAAAATGCTTCAGTTGGCTGGTGAGGGCTC
AGGACACTTCGACGTCCATGAGTTTGCTTTCGACGCCACCTTCGACGACG
AATACGCTGAGCAGGAGGTAAGAGCACAACACAATACAGCCCCCTTGCTG
CTGATGTATCATGCACAGCTATTTTATCGCGGTTTTGGGGTGCGAAGGCA
CCGTCCGTGCGTGGTTAAGCCGCACCCATCTGCCTAGCCTGTACGGTTGT
CGTGCAGTGAGTGAGCTCGTGGACTTCGTTGCACACCGACAAATACGAGC
ACTCGCAATCGCACCTAAATTTTGTCTTGTCGGACTTAGCTCTGGTTGGC
TTTGACAGCCTGTTCCTCGCACCCTCGTACACTCATTCACTCACTCACTC
ACTCGTATCCAAAACGTCACTATGCCACAACATATTACATCCTACCGCAT
GTTCCATCCATCCATCCATGTGTGCCCGACACTACTGCTGTACGCTACGC
TCCTCAATGACACGACAGGACGACGTTGACATGAAGGACGGGAGCGGACA
CATGCCTTCTTCCTCCTCCGCGATCACTTCGGCGGGGGGCACCGGCGCTG
CGTCCGTGGCCGCCGCTGCCGCCGCCGCCGCCGTCAGCACGGCCGTGGGC
CCACTTCGCGTCACGGGGTCCACCTCCAAGGACAAGCTCAAGCTGGCGCC
GCCGAACTTGATCTCGTCTCGTGGCATACGCTCGCACCACCACGATCACT
CCGACGACGACAACGACGACGACCAGCGACCACTGGTGGGCCGAAGCAGA
GGAAGAGGGAAGGGCAGGAGGGAGCTAGGCGAGGTTAGGTCGGAAGACTC
TGACGACGACGACGACGAGGATGACGACAGCGACACCGACGACAGCCAGG
ACGGCATTGACGGGGTGGGGGGAAGGGGCAGGGGCAGGCGGGGCGGGGGC
GTGGTGATGTCGGACGACGAGGGCGGCATTGGCGGGAAGGGGGTCCACGG
GGACGTGGACGCGCCCGGCCTCGGAAGCTTCAGCACCATGGGGGCCGTGA
TCGGGGACTTCAGCCCGCAGTTCAAGTTCTCCTTCACCGACGACATCCAT
CATCATCTGGATCTCGGGAGCGGACTAAAGGGGGGGGGGGACGGAGGGCG
GGGGGGAGGGTGGCTGCCCCGGCGCCTTTGTCGGGTTAGGCCATACCGAT
GCCGGTGTTGGTGTTGCGGTTTGTATCCTCCAAGCCACGTATTACGTCAT
TCATGCAGTGTGCATACCTATCTACATTAGGTACGATACCCTAACCCACA
GCTATTTACGCCGCGGACCTCCCTCCCTCCCTTCCTCCCCTGTGCTCGGC
CTTGCGCCAAACAACCCTAACCCAAATCGGAACGATCAATTCGATGGATG
TACCTGACTACTTAACCAGGACGAATTGCGGGACCTCGAGTCTTTCTCAG
AGCACGGGGGGCCGGACCAGCACGGCCGAGGGGGGTTAGCCCACGACGAT
ATGCACATGCTCATGGGGCTCTCCGCCTCTCGCGCCCAGCAGCTGCTCTC
CAGGGGAGGCCCCGCCGTGGTGAAGTCGGAGGTGCTATCGTCGTCGCCTT
CGCGGCTCGGCGCCACGCGCTCGAGCACCGCCGCGGCGGCGTCGGCCAAG
GCTGCGGCCGCCGCCGGCGCCACCGATGAGGGGGAAGAAGGGTCAGGCTC
GGGCACCGGCGGACTCAGCGGCTACGCGACGAACCACTACGCCTCAGGCG
CTGCGTACAACGGCCGACACACGGGGCCGTACGCGACGGCGGAAGCGGCA
GCAGACGGGGAGGGAGCGGAAGTCGGGGCGGCGGCGTCGGCAGTCCAAGC
TTCATCGAGGCCACAAGGGTCTTCGGCGGCGGCGGTTGCTGCTGCGGCGG
CGGCGGCCGCAGCAAGCGGTAGCGCTCAGGGAGGAAGCTTGTACGGGCGG
GATGGTGCAGCGGCAGCGGGGGCGGCGATTCCTACCCACCACCACGCGGC
AAGGGGGAGGCCCGTCGTGTCGGGAATGGAGATCATGGTGGGTGGTGGCC
CGCGGATGGGTATGGCCGGCGGCGCGGACGGGGAGGCGCGGAAGTTCGTC
GGGGCGTATTCGCCAGAGTCCAGACGACAGCGGATAGAGCGGTTCCTCCA
GAAGAGGGAGAAGAGGGTGAGTCAGCCGAGCCGCGTGCGCCTCCTTGTGC
TCGGTGTACCCGTCTACCCTACCGTCTTGTCTGTATTTGTCTGTTTGTTT
CGTCTGCTGCCCTGGCGTCCTTCGCGAATAATAGTGAAGGGAAGTTGCGT
TAGTCGCTAACCGTACCTCGAACGGTGTGCGCACATTCATTTGGTTTGTG
ATACATGGCTGCTGTCCCTCGGTGTGCGTTTTGCTGTACAATACGATGCG
GCCAAGAGTCGGGTGTGTTGGTTGGTTGATTGCAAGGACAACGCACGATG
ACATGACACAGTGACATGACACAATGACATGACAAAGGACGAGGCGAAGC
GGTGGTGTGCTTACGTGAGTCGCAGTTTATCGTGTTTAGGCGCCCCTGCC
CCCGCGTAGTCGTGTTGGGAGCATTTAGCTTGAGCTTCGGACGAACGCCT
TGTTGAGTTTCAATTTTATCCGTGCTGCGACTGATGTGCCTGCTCACTTA
TTTCCGCCTTGTCGTTGGATGCGATGTGCAATGCGATGCAATGCAATGCT
CTTCGCCGTGCCTCTCCGTGTCCATCACCATCTTACCTTGCCATTTGGAA
ACGCTTTGACCGCACCGGTGCATGGCACGACGACGTACGATCCTGTGACA
TAATTCGCCACCAGGTCTGGACGAAGATGGTAAAGTACGACGTCCGCAAG
AACTTTGCCGACACCCGCATGCGCGTCAAAGGCCGCTTCGTCAAGAAGGA
GGACGAGGCTCTGCTGCGCGAGGTCATGGCGTGCGCTTAACTCAACCCTA
CAGTAGTAGTTACGTGGGCTCTCTCTCCTATATCCGGTCGGGCTTGGTGT
GCTGTGGTGCGATGCGGGTGTTGCACGCCGCAACACACCAAAAAGCCACG
AGTCAAATTCGAGTATACATCGTAAATAAGCCAAGAGAACATTAGAGACC
AGCGGCCGGCTATCTGTACCCTGTGTGTCGCTGCCTCTGCGCGTAAAATT
AACATGCACCGGTCGACCGTTGCTGTTGGGCCGTCCCTCCCCCGTACCGT
GCTTTGCGTTTGCTTTTGCTTTTGTCTTTGCTTTGCTTTTGGTGCCGGAA
TTCCCTCTTTCGCCGTTTCCCTCGATACATATGATAATAAGCTGTTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig859:720..4868+

>mRNA_L-elsbetiae_contig859.17625.1 ID=mRNA_L-elsbetiae_contig859.17625.1|Name=mRNA_L-elsbetiae_contig859.17625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3924bp|location=Sequence derived from alignment at L-elsbetiae_contig859:720..4868+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAACGGATTGCTGGACCGGCGCGAGTCTTTCGATCTCCTCGATAA
CCTTGACTTCGGGATCATGGAGCTTGGTATGTCGGACGAGGAGCCCTCCG
ACGACGTTGACTCTGACGTCCACGTACCCACCGCCGCTGCCAAAGCGGTG
CCAGCGCCGATGGACTCCGACCGCCATCGCAATCGCAAAGTTTACGGGGA
GGGGGGCAGTGCTACAGCAGCTATAGCTACAGTATCCCCTCCTGTGGTTG
CGGCTGCCGCTGCCGCCGCCGCCGCCACCCCCGCTTCCGAAAAAGCCGCC
AGTGCGGCCGCGCGCGTAAGCCCATTCCGAAATAGTGGGAAAAGCGAACA
AGACGAAGATGCCGCTGTTGCCGTTGGCGCTGGCAGTATGAGGACAGCAG
CAACAGTAGCAGTAGCGCCGGCGTCTTCTGTCGGTCAAGGTCAAGATGGC
TCTGAAAAGATTCCGACGTCGGCGAAGGCAGGGTCAGAGGGTCGGCAAGA
CAGCGAGCAAGAGATCGATATGGAAAACGGATTGCTGGACCGGCGCGAGT
CTTTCGATCTCCTCGATAACCTTGACTTCGGGATCATGGAGCTTGGTATG
TCGGACGAGGAGCCCTCCGACGACGTTGACTCTGACGTCCACGTACCCAC
CGCCGCTGCCAAAGCGGTGCCAGCGCCGATGGACTCCGACCGCCATCGCA
ATCGCAAAGTTTACGGGGAGGGGGGCAGTGCTACAGCAGCTATAGCTACA
GTATCCCCTCCTGTGGTTGCGGCTGCCGCTGCCGCCGCCGCCGCCACCCC
CGCTTCCGAAAAAGCCGCCAGTGCGGCCGCGCGCGTAAGCCCATTCCGAA
ATAGTGGGAAAAGCGAACAAGACGAAGATGCCGCTGTTGCCGTTGGCGCT
GGCAGTATGAGGACAGCAGCAACAGTAGCAGTAGCGCCGGCGTCTTCTGT
CGGTCAAGGTCAAGATGGCTCTGAAAAGATTCCGACGTCGGCGAAGGCAG
GGTCAGAGGGTCGGCAAGACAGCGAGCAAGAGATCGATTTGGCTGGTGAG
GGCTCAGGACACTTCGACGTCCATGAGTTTGCTTTCGACGCCACCTTCGA
CGACGAATACGCTGAGCAGGAGTTGGCTGGTGAGGGCTCAGGACACTTCG
ACGTCCATGAGTTTGCTTTCGACGCCACCTTCGACGACGAATACGCTGAG
CAGGAGGACGACGTTGACATGAAGGACGGGAGCGGACACATGCCTTCTTC
CTCCTCCGCGATCACTTCGGCGGGGGGCACCGGCGCTGCGTCCGTGGCCG
CCGCTGCCGCCGCCGCCGCCGTCAGCACGGCCGTGGGCCCACTTCGCGTC
ACGGGGTCCACCTCCAAGGACAAGCTCAAGCTGGCGCCGCCGAACTTGAT
CTCGACGACGTTGACATGAAGGACGGGAGCGGACACATGCCTTCTTCCTC
CTCCGCGATCACTTCGGCGGGGGGCACCGGCGCTGCGTCCGTGGCCGCCG
CTGCCGCCGCCGCCGCCGTCAGCACGGCCGTGGGCCCACTTCGCGTCACG
GGGTCCACCTCCAAGGACAAGCTCAAGCTGGCGCCGCCGAACTTGATCTC
CCAGGACGGCATTGACGGGGTGGGGGGAAGGGGCAGGGGCAGGCGGGGCG
GGGGCGTGGTGATGTCGGACGACGAGGGCGGCATTGGCGGGAAGGGGGTC
CACGGGGACGTGGACGCGCCCGGCCTCGGAAGCTTCAGCACCATGGGGGC
CGTGATCGGGGACTTCAGCCCGCAGTTCAAGTTCTCCTTCACCGACGACA
TCCATCATCATCTGGATCTCGGGAGCGGACTAAAGGGGGGGGGGGACGGA
GGGCGGGGGGGAGGGTGGCTGCCCCGGCGCCTTTGTCGGCCAGGACGGCA
TTGACGGGGTGGGGGGAAGGGGCAGGGGCAGGCGGGGCGGGGGCGTGGTG
ATGTCGGACGACGAGGGCGGCATTGGCGGGAAGGGGGTCCACGGGGACGT
GGACGCGCCCGGCCTCGGAAGCTTCAGCACCATGGGGGCCGTGATCGGGG
ACTTCAGCCCGCAGTTCAAGTTCTCCTTCACCGACGACATCCATCATCAT
CTGGATCTCGGGAGCGGACTAAAGGGGGGGGGGGACGGAGGGCGGGGGGG
AGGGTGGCTGCCCCGGCGCCTTTGTCGGGACGAATTGCGGGACCTCGAGT
CTTTCTCAGAGCACGGGGGGCCGGACCAGCACGGCCGAGGGGGGTTAGCC
CACGACGATATGCACATGCTCATGGGGCTCTCCGCCTCTCGCGCCCAGCA
GCTGCTCTCCAGGGGAGGCCCCGCCGTGGTGAAGTCGGAGGTGCTATCGT
CGTCGCCTTCGCGGCTCGGCGCCACGCGCTCGAGCACCGCCGCGGCGGCG
TCGGCCAAGGCTGCGGCCGCCGCCGGCGCCACCGATGAGGGGGAAGAAGG
GTCAGGCTCGGGCACCGGCGGACTCAGCGGCTACGCGACGAACCACTACG
CCTCAGGCGCTGCGTACAACGGCCGACACACGGGGCCGTACGCGACGGCG
GAAGCGGCAGCAGACGGGGAGGGAGCGGAAGTCGGGGCGGCGGCGTCGGC
AGTCCAAGCTTCATCGAGGCCACAAGGGTCTTCGGCGGCGGCGGTTGCTG
CTGCGGCGGCGGCGGCCGCAGCAAGCGGTAGCGCTCAGGGAGGAAGCTTG
TACGGGCGGGATGGTGCAGCGGCAGCGGGGGCGGCGATTCCTACCCACCA
CCACGCGGCAAGGGGGAGGCCCGTCGTGTCGGGAATGGAGATCATGGTGG
GTGGTGGCCCGCGGATGGGTATGGCCGGCGGCGCGGACGGGGAGGCGCGG
AAGTTCGTCGGGGCGTATTCGCCAGAGTCCAGACGACAGCGGATAGAGCG
GTTCCTCCAGAAGAGGGAGAAGAGGGACGAATTGCGGGACCTCGAGTCTT
TCTCAGAGCACGGGGGGCCGGACCAGCACGGCCGAGGGGGGTTAGCCCAC
GACGATATGCACATGCTCATGGGGCTCTCCGCCTCTCGCGCCCAGCAGCT
GCTCTCCAGGGGAGGCCCCGCCGTGGTGAAGTCGGAGGTGCTATCGTCGT
CGCCTTCGCGGCTCGGCGCCACGCGCTCGAGCACCGCCGCGGCGGCGTCG
GCCAAGGCTGCGGCCGCCGCCGGCGCCACCGATGAGGGGGAAGAAGGGTC
AGGCTCGGGCACCGGCGGACTCAGCGGCTACGCGACGAACCACTACGCCT
CAGGCGCTGCGTACAACGGCCGACACACGGGGCCGTACGCGACGGCGGAA
GCGGCAGCAGACGGGGAGGGAGCGGAAGTCGGGGCGGCGGCGTCGGCAGT
CCAAGCTTCATCGAGGCCACAAGGGTCTTCGGCGGCGGCGGTTGCTGCTG
CGGCGGCGGCGGCCGCAGCAAGCGGTAGCGCTCAGGGAGGAAGCTTGTAC
GGGCGGGATGGTGCAGCGGCAGCGGGGGCGGCGATTCCTACCCACCACCA
CGCGGCAAGGGGGAGGCCCGTCGTGTCGGGAATGGAGATCATGGTGGGTG
GTGGCCCGCGGATGGGTATGGCCGGCGGCGCGGACGGGGAGGCGCGGAAG
TTCGTCGGGGCGTATTCGCCAGAGTCCAGACGACAGCGGATAGAGCGGTT
CCTCCAGAAGAGGGAGAAGAGGGTCTGGACGAAGATGGTAAAGTACGACG
TCCGCAAGAACTTTGCCGACACCCGCATGCGCGTCAAAGGCCGCTTCGTC
AAGAAGGAGGACGAGGCTCTGCTGCGCGAGGTCATGGCGTGCGCTTAAGT
CTGGACGAAGATGGTAAAGTACGACGTCCGCAAGAACTTTGCCGACACCC
GCATGCGCGTCAAAGGCCGCTTCGTCAAGAAGGAGGACGAGGCTCTGCTG
CGCGAGGTCATGGCGTGCGCTTAA
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