mRNA_L-elsbetiae_contig8588.17623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8588.17623.1
Unique NamemRNA_L-elsbetiae_contig8588.17623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8588.17623.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 8.060e-105
Identity = 212/365 (58.08%), Postives = 252/365 (69.04%), Query Frame = 3 
Query:    3 RIMEIPSPPRFDGLVKAVMEAHAVPSGNEKDLTFTYRDNEGDEVRFDTDGELDLAVRTSSVPLRIMVQ--------VQNARSRPAASTGGNLQAAAAASSSTVPSTPGYAVASNVGSVLGD-DDTDMVMVDVPNGDAFVSGARAGTAXXXXXXXXXXXXSEPVKNKAEEIDAPAAFEAEAAAARDPEGSMLYQKASIRLAKRSKVHLTPTQLWRVMALFQIQGRQLVIFGLAPHKALD------TDADPSAASGAXXXXXXXXXXXXXXXGLKRSKDHVARGLVADPVQRLLSLNGVDLPEEEVQPLLEALRVRPRRLVRLNLLPPDVLQDMPDDH--REGRGLRG------RHMHGHGPGGRFS 1028
            RIMEIP+PPRFD LVK VM+A+++P+G E+ LTFTY+DN+GDEVRFDT+ ELDLA+RTSSVPLRIMV            +RS P      N +A +AA  S +PSTPGYAVASNVGS +G  D+ DM+MVD+P   A  +   +G +            S+    + E I+  AAFEAEAAAARDPEGS+LYQKAS+RLAKR KVHLTPTQLWRVMALFQIQGRQLV+FGLAPH++LD      +D D S   G                GLKRSK  VA  +VAD VQRLL LNGV+LPE+EVQPLL+ALRVR RRLVRL LL P+ L+DMPD H  R+ +G RG       H HGHGPGGRF+
Sbjct:   14 RIMEIPNPPRFDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTP------NPEATSAAPPS-IPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAGPSGGSVDG---------SQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAAAASDLDSSDEEGGENKPSAVR-------GLKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRFA 355
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BLAST of mRNA_L-elsbetiae_contig8588.17623.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 7.330e-98
Identity = 203/344 (59.01%), Postives = 234/344 (68.02%), Query Frame = 3 
Query:   57 MEAHAVPSGNEKDLTFTYRDNEGDEVRFDTDGELDLAVRTSSVPLRIMVQ------------VQNARSRPAASTGGNLQAAAAASSSTVPSTPGYAVASNVGSVLGD-DDTDMVMVDVPNGDAFVSGARAGTAXXXXXXXXXXXXSEPVKNKAEEIDAPAAFEAEAAAARDPEGSMLYQKASIRLAKRSKVHLTPTQLWRVMALFQIQGRQLVIFGLAPHKALDTDADPSAASGAXXXXXXXXXXXXXXXGLKRSKDHVARGLVADPVQRLLSLNGVDLPEEEVQPLLEALRVRPRRLVRLNLLPPDVLQDMPDDH--REGRGLRG----RHMHGHG--PGGRF 1025
            MEA+++P+G EK LTFTY+DNEGDEVRFDT+ ELDLA+RTSSVPLRIMV                 RS P      N +A +AA  S +PSTPGYAVASNVGSV+G  DD DM+MVD+P G+A    A A  A              P K   E I+  AAFEAEAAAARDPEGS+LYQK+S+RLAKR KVHLTPTQLWRVMALFQIQGRQLV+FGLAPH++LD  A  +A+                  GLKRSK  VAR +VAD VQRLL LNGV+LP +EVQPLL+ALRVR RRLVRL LL P+ L+DMPD H  R+G+G RG      MHGH   PGGRF
Sbjct:    1 MEAYSLPAGVEKQLTFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTP------NPEATSAAPPS-IPSTPGYAVASNVGSVVGGGDDADMIMVDMP-GEA----AAAAAAGPSGGSVDGSQADGPEK---EAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDASASAAASDVDSSDEEGGENKPSAVRGLKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGPRGGPPGHPMHGHXXXPGGRF 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8588.17623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE8.060e-10558.08PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK7_ECTSI7.330e-9859.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8588contigL-elsbetiae_contig8588:2103..4023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001850.1
Exons2
Model size1294
Cds size1284
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8588.17623.1prot_L-elsbetiae_contig8588.17623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8588 2111..4023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.6727386-UTR-L-elsbetiae_contig8588:2102..21101622816940.6727386-UTR-L-elsbetiae_contig8588:2102..2110Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8588 2103..2110 +
1691683928.3815877-UTR-L-elsbetiae_contig8588:2102..21101691683928.3815877-UTR-L-elsbetiae_contig8588:2102..2110Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8588 2103..2110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.6853082-CDS-L-elsbetiae_contig8588:2110..22331622816940.6853082-CDS-L-elsbetiae_contig8588:2110..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8588 2111..2233 +
1691683928.3969965-CDS-L-elsbetiae_contig8588:2110..22331691683928.3969965-CDS-L-elsbetiae_contig8588:2110..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8588 2111..2233 +
1622816940.6975777-CDS-L-elsbetiae_contig8588:2862..40231622816940.6975777-CDS-L-elsbetiae_contig8588:2862..4023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8588 2863..4023 +
1691683928.4083712-CDS-L-elsbetiae_contig8588:2862..40231691683928.4083712-CDS-L-elsbetiae_contig8588:2862..4023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8588 2863..4023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8588.17623.1

>prot_L-elsbetiae_contig8588.17623.1 ID=prot_L-elsbetiae_contig8588.17623.1|Name=mRNA_L-elsbetiae_contig8588.17623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=428bp
MEIPSPPRFDGLVKAVMEAHAVPSGNEKDLTFTYRDNEGDEVRFDTDGEL
DLAVRTSSVPLRIMVQVQNARSRPAASTGGNLQAAAAASSSTVPSTPGYA
VASNVGSVLGDDDTDMVMVDVPNGDAFVSGARAGTAGGGAGNDGGGDGSE
PVKNKAEEIDAPAAFEAEAAAARDPEGSMLYQKASIRLAKRSKVHLTPTQ
LWRVMALFQIQGRQLVIFGLAPHKALDTDADPSAASGASSDEEGGAAAAA
RGGGLKRSKDHVARGLVADPVQRLLSLNGVDLPEEEVQPLLEALRVRPRR
LVRLNLLPPDVLQDMPDDHREGRGLRGRHMHGHGPGGRFSVGRPGRGRGG
GRGAPPMPFHPPPPFFNQHHQGGAFSGPHGGGSEDGNPPHHVPPPHMMGR
GRPHMEPPHGHHHRGHMDGEGPHHPPHR
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mRNA from alignment at L-elsbetiae_contig8588:2103..4023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8588.17623.1 ID=mRNA_L-elsbetiae_contig8588.17623.1|Name=mRNA_L-elsbetiae_contig8588.17623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1921bp|location=Sequence derived from alignment at L-elsbetiae_contig8588:2103..4023+ (Laminarionema elsbetiae ELsaHSoW15)
TACGGATCATGGAGATCCCGAGCCCCCCGCGCTTTGATGGTCTCGTGAAA
GCCGTAATGGAAGCTCACGCTGTGCCATCGGGGAACGAGAAAGACCTTAC
CTTCACCTACCGAGACAATGAAGGGGACGAGGTAAGAAGCGTTTACAGCA
TAAAGTAAAGCCGATAGGTCATTTTGTGGTGCTGTGGCCTGATAGGCTCG
TGTTAGTTTGTAGACAGGGAGAAAAAGAGACGATCGCGTTATTTTTCCCC
CTCCGAAGTTGACTGCTGTTCGGGCGATTCTTCGGAATTCCCCTTCCAGC
AGTCGTCCAACATAATACTTCTACATCCATACATACATACATACATACAT
ATCTACATACATAGTGTACAGAGTGGTTGTTCGAGCAACACTGTCTCGAA
GATAACTATCGCTGGTTTCGCATGCCAGGCTTCCGGTAAGGTTGTCAACC
TCGTGATAAAGACTTCTCTTGAAGGAGTGATACCGCGAGAGCTCCACTCT
ACAACATATTGTATGTAAACTTTTAACTTTGTACAACTTCAACTGGGTAC
ATAACGCGGCACAAGTCTCATTCGCGGCCTCCGGGCCTGCTGCAATCATG
TCGAGGGGAGATGGACACAACCAAGAACGACGCAACTTGGATATGGCACC
GCTGGAGAAACATTAGGCAGCGATGGGTTGAAAGAATGACCAAAGGAAAA
ATAACGGCGACCTAACTGTTTTTTGTTTCCCGTCCCTCCTGCTTGCGCTA
TTTGATACAGGTACGCTTCGACACCGACGGCGAGCTGGACCTTGCCGTCC
GCACCTCCTCCGTTCCGCTCCGGATCATGGTCCAGGTCCAAAACGCACGT
TCGCGCCCCGCTGCGTCTACCGGAGGCAACCTGCAGGCTGCCGCCGCTGC
CTCTTCCTCCACCGTCCCCTCGACCCCGGGCTATGCCGTGGCTTCTAACG
TGGGCTCCGTCTTGGGTGACGATGACACAGACATGGTCATGGTGGACGTG
CCCAATGGAGATGCTTTCGTCTCTGGCGCCCGGGCCGGGACCGCGGGTGG
CGGTGCCGGCAATGACGGTGGCGGTGATGGGAGCGAACCTGTCAAGAACA
AGGCGGAAGAGATAGACGCCCCCGCTGCTTTCGAGGCCGAGGCCGCCGCC
GCGAGGGATCCGGAAGGGAGCATGCTCTACCAGAAGGCGTCCATTCGCCT
CGCCAAGCGCTCCAAGGTCCACCTCACGCCAACCCAACTGTGGAGGGTTA
TGGCTCTCTTTCAGATCCAGGGGAGGCAGCTGGTAATCTTTGGATTGGCG
CCGCACAAGGCGCTGGACACCGATGCCGACCCTTCTGCCGCTAGTGGAGC
TTCTTCCGACGAGGAGGGGGGTGCTGCTGCTGCCGCCCGCGGCGGAGGCC
TGAAACGCAGCAAGGACCACGTGGCGCGTGGCCTCGTGGCCGACCCCGTG
CAGCGCTTGCTGAGCCTCAACGGCGTCGACCTCCCGGAAGAAGAGGTGCA
GCCCTTGCTGGAAGCCCTGCGCGTCCGCCCCCGGCGCCTGGTAAGGCTCA
ACCTTCTGCCCCCCGATGTCCTCCAGGACATGCCGGACGATCACCGCGAA
GGAAGGGGCTTGCGAGGTCGCCACATGCACGGGCACGGACCCGGCGGCCG
CTTCTCCGTAGGACGCCCAGGGAGGGGCCGCGGCGGCGGCAGGGGAGCTC
CACCGATGCCGTTCCACCCACCCCCGCCGTTTTTCAACCAGCACCACCAG
GGCGGGGCGTTCTCAGGCCCCCATGGTGGGGGTTCGGAAGACGGCAATCC
ACCTCATCACGTCCCCCCGCCCCACATGATGGGAAGGGGACGACCCCACA
TGGAACCTCCCCACGGCCACCACCACCGCGGACACATGGACGGGGAGGGG
CCCCACCACCCCCCCCACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8588:2103..4023+

>mRNA_L-elsbetiae_contig8588.17623.1 ID=mRNA_L-elsbetiae_contig8588.17623.1|Name=mRNA_L-elsbetiae_contig8588.17623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2568bp|location=Sequence derived from alignment at L-elsbetiae_contig8588:2103..4023+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATCCCGAGCCCCCCGCGCTTTGATGGTCTCGTGAAAGCCGTAAT
GGAAGCTCACGCTGTGCCATCGGGGAACGAGAAAGACCTTACCTTCACCT
ACCGAGACAATGAAGGGGACGAGATGGAGATCCCGAGCCCCCCGCGCTTT
GATGGTCTCGTGAAAGCCGTAATGGAAGCTCACGCTGTGCCATCGGGGAA
CGAGAAAGACCTTACCTTCACCTACCGAGACAATGAAGGGGACGAGGTAC
GCTTCGACACCGACGGCGAGCTGGACCTTGCCGTCCGCACCTCCTCCGTT
CCGCTCCGGATCATGGTCCAGGTCCAAAACGCACGTTCGCGCCCCGCTGC
GTCTACCGGAGGCAACCTGCAGGCTGCCGCCGCTGCCTCTTCCTCCACCG
TCCCCTCGACCCCGGGCTATGCCGTGGCTTCTAACGTGGGCTCCGTCTTG
GGTGACGATGACACAGACATGGTCATGGTGGACGTGCCCAATGGAGATGC
TTTCGTCTCTGGCGCCCGGGCCGGGACCGCGGGTGGCGGTGCCGGCAATG
ACGGTGGCGGTGATGGGAGCGAACCTGTCAAGAACAAGGCGGAAGAGATA
GACGCCCCCGCTGCTTTCGAGGCCGAGGCCGCCGCCGCGAGGGATCCGGA
AGGGAGCATGCTCTACCAGAAGGCGTCCATTCGCCTCGCCAAGCGCTCCA
AGGTCCACCTCACGCCAACCCAACTGTGGAGGGTTATGGCTCTCTTTCAG
ATCCAGGGGAGGCAGCTGGTAATCTTTGGATTGGCGCCGCACAAGGCGCT
GGACACCGATGCCGACCCTTCTGCCGCTAGTGGAGCTTCTTCCGACGAGG
AGGGGGGTGCTGCTGCTGCCGCCCGCGGCGGAGGCCTGAAACGCAGCAAG
GACCACGTGGCGCGTGGCCTCGTGGCCGACCCCGTGCAGCGCTTGCTGAG
CCTCAACGGCGTCGACCTCCCGGAAGAAGAGGTGCAGCCCTTGCTGGAAG
CCCTGCGCGTCCGCCCCCGGCGCCTGGTAAGGCTCAACCTTCTGCCCCCC
GATGTCCTCCAGGACATGCCGGACGATCACCGCGAAGGAAGGGGCTTGCG
AGGTCGCCACATGCACGGGCACGGACCCGGCGGCCGCTTCTCCGTAGGAC
GCCCAGGGAGGGGCCGCGGCGGCGGCAGGGGAGCTCCACCGATGCCGTTC
CACCCACCCCCGCCGTTTTTCAACCAGCACCACCAGGGCGGGGCGTTCTC
AGGCCCCCATGGTGGGGGTTCGGAAGACGGCAATCCACCTCATCACGTCC
CCCCGCCCCACATGATGGGAAGGGGACGACCCCACATGGAACCTCCCCAC
GGCCACCACCACCGCGGACACATGGACGGGGAGGGGCCCCACCACCCCCC
CCACCGCGTACGCTTCGACACCGACGGCGAGCTGGACCTTGCCGTCCGCA
CCTCCTCCGTTCCGCTCCGGATCATGGTCCAGGTCCAAAACGCACGTTCG
CGCCCCGCTGCGTCTACCGGAGGCAACCTGCAGGCTGCCGCCGCTGCCTC
TTCCTCCACCGTCCCCTCGACCCCGGGCTATGCCGTGGCTTCTAACGTGG
GCTCCGTCTTGGGTGACGATGACACAGACATGGTCATGGTGGACGTGCCC
AATGGAGATGCTTTCGTCTCTGGCGCCCGGGCCGGGACCGCGGGTGGCGG
TGCCGGCAATGACGGTGGCGGTGATGGGAGCGAACCTGTCAAGAACAAGG
CGGAAGAGATAGACGCCCCCGCTGCTTTCGAGGCCGAGGCCGCCGCCGCG
AGGGATCCGGAAGGGAGCATGCTCTACCAGAAGGCGTCCATTCGCCTCGC
CAAGCGCTCCAAGGTCCACCTCACGCCAACCCAACTGTGGAGGGTTATGG
CTCTCTTTCAGATCCAGGGGAGGCAGCTGGTAATCTTTGGATTGGCGCCG
CACAAGGCGCTGGACACCGATGCCGACCCTTCTGCCGCTAGTGGAGCTTC
TTCCGACGAGGAGGGGGGTGCTGCTGCTGCCGCCCGCGGCGGAGGCCTGA
AACGCAGCAAGGACCACGTGGCGCGTGGCCTCGTGGCCGACCCCGTGCAG
CGCTTGCTGAGCCTCAACGGCGTCGACCTCCCGGAAGAAGAGGTGCAGCC
CTTGCTGGAAGCCCTGCGCGTCCGCCCCCGGCGCCTGGTAAGGCTCAACC
TTCTGCCCCCCGATGTCCTCCAGGACATGCCGGACGATCACCGCGAAGGA
AGGGGCTTGCGAGGTCGCCACATGCACGGGCACGGACCCGGCGGCCGCTT
CTCCGTAGGACGCCCAGGGAGGGGCCGCGGCGGCGGCAGGGGAGCTCCAC
CGATGCCGTTCCACCCACCCCCGCCGTTTTTCAACCAGCACCACCAGGGC
GGGGCGTTCTCAGGCCCCCATGGTGGGGGTTCGGAAGACGGCAATCCACC
TCATCACGTCCCCCCGCCCCACATGATGGGAAGGGGACGACCCCACATGG
AACCTCCCCACGGCCACCACCACCGCGGACACATGGACGGGGAGGGGCCC
CACCACCCCCCCCACCGC
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