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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 937 |
| Cds size | 657 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816940.4307346-UTR-L-elsbetiae_contig8581:1279..1516 | 1622816940.4307346-UTR-L-elsbetiae_contig8581:1279..1516 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8581 1280..1516 - |
| 1691683928.193143-UTR-L-elsbetiae_contig8581:1279..1516 | 1691683928.193143-UTR-L-elsbetiae_contig8581:1279..1516 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8581 1280..1516 - |
| 1622816940.5029979-UTR-L-elsbetiae_contig8581:3243..3286 | 1622816940.5029979-UTR-L-elsbetiae_contig8581:3243..3286 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8581 3244..3286 - |
| 1691683928.2521482-UTR-L-elsbetiae_contig8581:3243..3286 | 1691683928.2521482-UTR-L-elsbetiae_contig8581:3243..3286 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8581 3244..3286 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816940.444125-CDS-L-elsbetiae_contig8581:1516..1804 | 1622816940.444125-CDS-L-elsbetiae_contig8581:1516..1804 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 1517..1804 - |
| 1691683928.2038918-CDS-L-elsbetiae_contig8581:1516..1804 | 1691683928.2038918-CDS-L-elsbetiae_contig8581:1516..1804 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 1517..1804 - |
| 1622816940.460661-CDS-L-elsbetiae_contig8581:2226..2407 | 1622816940.460661-CDS-L-elsbetiae_contig8581:2226..2407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 2227..2407 - |
| 1691683928.2163472-CDS-L-elsbetiae_contig8581:2226..2407 | 1691683928.2163472-CDS-L-elsbetiae_contig8581:2226..2407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 2227..2407 - |
| 1622816940.4743829-CDS-L-elsbetiae_contig8581:2693..2806 | 1622816940.4743829-CDS-L-elsbetiae_contig8581:2693..2806 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 2694..2806 - |
| 1691683928.2262444-CDS-L-elsbetiae_contig8581:2693..2806 | 1691683928.2262444-CDS-L-elsbetiae_contig8581:2693..2806 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 2694..2806 - |
| 1622816940.4886217-CDS-L-elsbetiae_contig8581:3168..3243 | 1622816940.4886217-CDS-L-elsbetiae_contig8581:3168..3243 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 3169..3243 - |
| 1691683928.235228-CDS-L-elsbetiae_contig8581:3168..3243 | 1691683928.235228-CDS-L-elsbetiae_contig8581:3168..3243 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8581 3169..3243 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8581.17620.1 >prot_L-elsbetiae_contig8581.17620.1 ID=prot_L-elsbetiae_contig8581.17620.1|Name=mRNA_L-elsbetiae_contig8581.17620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MCDTTKVSDYFGIHGVSFQVMRTAGSFGNSFDLIVANAIRFKDLPHISTQ
CQRAPPVSAAPVLIEGYYWKMQHFAPGKPGEAHKVKVLCVEDNTTTWQKV
QGSALTFADSMKFELNIAPLRREDTHSSTRGTTSTDTLTHATKKVVEREV
PITGLAGQCLGVYTLVLWLRVPSTEEVVPYETPIIGTSSDGNLPPMVSAT
VLQSSLGMKDVKVANNYN* back to topmRNA from alignment at L-elsbetiae_contig8581:1280..3286- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8581.17620.1 ID=mRNA_L-elsbetiae_contig8581.17620.1|Name=mRNA_L-elsbetiae_contig8581.17620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2007bp|location=Sequence derived from alignment at L-elsbetiae_contig8581:1280..3286- (Laminarionema elsbetiae ELsaHSoW15)
GATTACCGTAAGCCAGGGCTATTCCGGGCAGGATAGGAATGTGATGTGTG
ACACCACGAAGGTCAGCGACTACTTTGGGATACACGGTGTTTCCTTCCAG
GTCATGCGCACGGCGGGGGTAAGCACAACGTTGGAGCTACAGAGTCAGAT
GCATTTAGATAATTATCCATTAGTCACGTTCTTCCGAGGTCGTAGCGCCT
TGGGCAGCCCGAATCGAGATGAGACTTCGAGACGATAATGGTGCCACGAT
ATAGGCCTTTCGAACGAACCTGGTCTCTAACTCCCTGGCCGTTTTGGTCG
TCCAAGCGATCATTGCTAGCACAGCTATCTATACAACCCGACTGAGTATG
TTGTCCGCGCTGTACCTCTTGTTGCAGTTGAATAAGCAGGACAAAAAAAT
AGACTTCGTGCATAATGCACAGCAGTGCTGATATATATTGTCGTTGCTGT
TCGCGCCCGTCCTCCCGTTCTCCTCCCCAGAGCTTCGGGAATTCGTTTGA
CCTGATCGTGGCGAACGCCATACGGTTCAAGGATCTGCCGCACATTAGCA
CGCAGTGCCAACGCGCGCCGCCGGTATCCGCTGCCCCTGTCCTGTAAGTA
AATGGCGGTAGACAGGTGCTTTATTCTGAAATATTACGTAAGGCAGAGGC
ACTCTCTCTCTGTATCAGCAGCGCGTTTATTTTGTCAAAAACGACAAACC
TTCCCGAATTTCAACCTCGGCACATACCCCCCCAGTTCTGCTTGCCGGGA
GCGAGGATACCCCACTCCGCACTGTTAGACAAACCGCAGCAATATGTCTC
CTTCCCACGACTTTCTCTGCTGATCCTCTTCCATTCGGGTTTGCTACCGT
GCATCTTTTTTTCTTTTTTTTTTTCGCAGCATCGAGGGCTATTACTGGAA
AATGCAGCACTTTGCACCCGGAAAACCTGGGGAAGCGCACAAGGTGAAAG
TCCTTTGCGTGGAGGACAACACAACGACGTGGCAGAAAGTGCAGGGGTCA
GCCTTGACCTTCGCGGACAGCATGAAGTTCGAACTCAACATCGCGCCTTT
GAGGAGGGAGGTGAGCACCTGTCTGCGTTGTGCGCATTGTTTGCCATGCT
TTATATGTCTGTGGCCGACCTTGTATACCTACACCATGCCCCGAGCAGCG
GTAGTCATGCAGGGGCCTTAAGCGTATAGAGTATGGACGGCCAAGCTGTT
ACCGTTTTGCCGTGTAGCGTATCGCCCGAGAGCTCATGCCATGCCGCAGT
TTGCTTCGCTTTTCTTTGTGGCTCATTGATTGGCGTTTTGGCTACAGCAG
TATGGCCGTCGGTTCGAACGAAGGCAACCCGAAAAAAGCGTGGCTTCGTC
TATCACCGTAGGTAAACACCCAAACAACCGCGAGCTTGATTGCGTCAATT
TCAGTGTTACTGCTGTTGCTAATATCGAACGTCCTCTGCTGGGTACCTAC
TTCGCTTGTTCCTTTGTGGCGCAAACTCACAGGACACCCACAGTTCGACC
AGGGGGACCACATCAACCGATACTCTCACGCACGCCACAAAAAAAGTCGT
CGAACGAGAGGTTCCCATTACAGGGCTTGCAGGGCAATGCCTGGGGGTCT
ACACGCTCGTCCTGTGGCTGAGGGTGCCGTCCACGGAGGAGGTAGTTCCG
TACGAGACGCCGATCATCGGTACCTCTTCGGACGGAAACTTGCCCCCCAT
GGTCTCCGCGACGGTGCTGCAAAGCAGCCTGGGAATGAAGGATGTGAAGG
TGGCGAACAACTATAATTGATCCTGAACAACATTAACTTTCCCCCCACGA
GTTGACGAGGGTATTGATCGGAGACCCTTAGGGGCGTTCTTTGTGGCAGG
GGTGGTGGGACAAAACAGGGGTGGGGGCAGGCATCGCCGGTGTTGTGATG
GGGTTCTTCTTGCCTTTGAAGATCTCTCCTTGTGTGCGTTTGTCTGCGTG
ATGCGTGTGCAGGAGAACTCACTTGCGAGAAAGTGTTGGGTGTGCGGTAG
CGAGAAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8581:1280..3286- >mRNA_L-elsbetiae_contig8581.17620.1 ID=mRNA_L-elsbetiae_contig8581.17620.1|Name=mRNA_L-elsbetiae_contig8581.17620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig8581:1280..3286- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGACACCACGAAGGTCAGCGACTACTTTGGGATACACGGTGTTTC
CTTCCAGGTCATGCGCACGGCGGGGATGTGTGACACCACGAAGGTCAGCG
ACTACTTTGGGATACACGGTGTTTCCTTCCAGGTCATGCGCACGGCGGGG
AGCTTCGGGAATTCGTTTGACCTGATCGTGGCGAACGCCATACGGTTCAA
GGATCTGCCGCACATTAGCACGCAGTGCCAACGCGCGCCGCCGGTATCCG
CTGCCCCTGTCCTAGCTTCGGGAATTCGTTTGACCTGATCGTGGCGAACG
CCATACGGTTCAAGGATCTGCCGCACATTAGCACGCAGTGCCAACGCGCG
CCGCCGGTATCCGCTGCCCCTGTCCTCATCGAGGGCTATTACTGGAAAAT
GCAGCACTTTGCACCCGGAAAACCTGGGGAAGCGCACAAGGTGAAAGTCC
TTTGCGTGGAGGACAACACAACGACGTGGCAGAAAGTGCAGGGGTCAGCC
TTGACCTTCGCGGACAGCATGAAGTTCGAACTCAACATCGCGCCTTTGAG
GAGGGAGCATCGAGGGCTATTACTGGAAAATGCAGCACTTTGCACCCGGA
AAACCTGGGGAAGCGCACAAGGTGAAAGTCCTTTGCGTGGAGGACAACAC
AACGACGTGGCAGAAAGTGCAGGGGTCAGCCTTGACCTTCGCGGACAGCA
TGAAGTTCGAACTCAACATCGCGCCTTTGAGGAGGGAGGACACCCACAGT
TCGACCAGGGGGACCACATCAACCGATACTCTCACGCACGCCACAAAAAA
AGTCGTCGAACGAGAGGTTCCCATTACAGGGCTTGCAGGGCAATGCCTGG
GGGTCTACACGCTCGTCCTGTGGCTGAGGGTGCCGTCCACGGAGGAGGTA
GTTCCGTACGAGACGCCGATCATCGGTACCTCTTCGGACGGAAACTTGCC
CCCCATGGTCTCCGCGACGGTGCTGCAAAGCAGCCTGGGAATGAAGGATG
TGAAGGTGGCGAACAACTATAATTGAGACACCCACAGTTCGACCAGGGGG
ACCACATCAACCGATACTCTCACGCACGCCACAAAAAAAGTCGTCGAACG
AGAGGTTCCCATTACAGGGCTTGCAGGGCAATGCCTGGGGGTCTACACGC
TCGTCCTGTGGCTGAGGGTGCCGTCCACGGAGGAGGTAGTTCCGTACGAG
ACGCCGATCATCGGTACCTCTTCGGACGGAAACTTGCCCCCCATGGTCTC
CGCGACGGTGCTGCAAAGCAGCCTGGGAATGAAGGATGTGAAGGTGGCGA
ACAACTATAATTGA back to top
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