mRNA_L-elsbetiae_contig8575.17614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8575.17614.1
Unique NamemRNA_L-elsbetiae_contig8575.17614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8575.17614.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.570e-48
Identity = 99/188 (52.66%), Postives = 125/188 (66.49%), Query Frame = 1 
Query:    4 LVLLYTSRADSGAPSITCHAMGSTHDEKAWRVLDDVVNELGRLIRDDKYGFPGVGLV-RSKVEKESASSDSKLETLLDDLADSMTDHMNIKFEELARMSSNMAGGVALYLQKGQETLDGSLKASITGLGQELSPSLKGIAAVVNKCLVSLSGEETPCPRLIMVTEDPSPGSPRSRFAHFRGDILRKLL 564
            LVLLY  R ++G   I CHAMGS H+EKA   LDDVV EL RL+ D KYGFPG+ L     VE + A+S  +L+ LL   A  + DHMN+ F+ELAR S+ +AGGV  +L+KGQE +  S    I  LGQ++S  L  IAAV +KCL+    ++ PCPRLIMV ED SPGS  SR +HFR D++ KLL
Sbjct:  755 LVLLYEHRKEAGRSVIECHAMGSAHNEKAGGTLDDVVAELRRLVGDPKYGFPGIWLFFDGGVEHQKATSAGELDKLLSRFAGELKDHMNVNFKELARKSNVIAGGVERHLRKGQEEMATSFNHQIQQLGQDMSRKLDCIAAVTSKCLLVSVEKDIPCPRLIMVLEDVSPGSALSRLSHFRRDMVDKLL 942
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BLAST of mRNA_L-elsbetiae_contig8575.17614.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 3.630e-41
Identity = 91/191 (47.64%), Postives = 123/191 (64.40%), Query Frame = 1 
Query:    4 LVLLYTSRADSGAPSITCHAMGSTHDEKAWRVLDDVVNELGRLIRDDKYGFPGVGLVR-SKVEKESASSDSKLETLLDDLADSMTDHMNIKFEELARMSSNMAGGVALYLQKGQETLDGSLKASITGLGQELSPSLKGIAAVVNKCLVSLSGEETPCPRLIMVTEDPSPGSPRSRFAHFRGDILRKL-LGK 570
            LVLLY  R D+G   I CHAMGS HDEKAWR L+DVV ELG+L+ D KYGFPGVGL      +K+  SS   LE LL      + + +N+K EEL +   ++AGGV  +L+KGQE +          L +++S  L  IAAV ++CL+  + ++ PCPRLIMV+ED  P S +SR +HFR +++ +L LGK
Sbjct:  586 LVLLYEHR-DAGRAVIECHAMGSAHDEKAWRTLEDVVTELGQLVGDAKYGFPGVGLFFVGGGDKQKVSSAETLEGLLTRFTGELKEQINVKVEELGQKLDDIAGGVEKHLRKGQEEM--------ASLREDVSLQLDCIAAVTSECLLVSAEKDIPCPRLIMVSEDDVPESDQSRLSHFRREMMDQLFLGK 767
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BLAST of mRNA_L-elsbetiae_contig8575.17614.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.790e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    4 LVLLYTSRADSGAPSITCHAMGSTHDEKAWRV-LDDVVNELGRLIRDDKYGFPGVGLVRSKVEKESA-SSDSKLETLLDDLADSMTDHMNIKF 276
            LVLLY  RA  G   I CHA G+  D+ + R  L D+ +++  LI D KYGFPG+GLVRS   +E+  SSDS  + LL+ + D + D MN+KF
Sbjct:  909 LVLLYEVRAIDGTSWIECHARGNVSDDDSARTALKDIGDQVHELINDHKYGFPGLGLVRSGESEETVISSDSDHKALLERIVDVLRDQMNVKF 1001
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8575.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE1.570e-4852.66Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE3.630e-4147.64Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI3.790e-1347.31LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8575contigL-elsbetiae_contig8575:2712..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size576
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.0552895-CDS-L-elsbetiae_contig8575:2711..30211622816940.0552895-CDS-L-elsbetiae_contig8575:2711..3021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8575 2712..3021 +
1691683927.9479957-CDS-L-elsbetiae_contig8575:2711..30211691683927.9479957-CDS-L-elsbetiae_contig8575:2711..3021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8575 2712..3021 +
1622816940.0651746-CDS-L-elsbetiae_contig8575:3325..35881622816940.0651746-CDS-L-elsbetiae_contig8575:3325..3588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8575 3326..3588 +
1691683927.9611342-CDS-L-elsbetiae_contig8575:3325..35881691683927.9611342-CDS-L-elsbetiae_contig8575:3325..3588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8575 3326..3588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8575.17614.1prot_L-elsbetiae_contig8575.17614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8575 2712..3588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8575.17614.1

>prot_L-elsbetiae_contig8575.17614.1 ID=prot_L-elsbetiae_contig8575.17614.1|Name=mRNA_L-elsbetiae_contig8575.17614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
RLVLLYTSRADSGAPSITCHAMGSTHDEKAWRVLDDVVNELGRLIRDDKY
GFPGVGLVRSKVEKESASSDSKLETLLDDLADSMTDHMNIKFEELARMSS
NMAGGVALYLQKGQETLDGSLKASITGLGQELSPSLKGIAAVVNKCLVSL
SGEETPCPRLIMVTEDPSPGSPRSRFAHFRGDILRKLLGKK
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mRNA from alignment at L-elsbetiae_contig8575:2712..3589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8575.17614.1 ID=mRNA_L-elsbetiae_contig8575.17614.1|Name=mRNA_L-elsbetiae_contig8575.17614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=878bp|location=Sequence derived from alignment at L-elsbetiae_contig8575:2712..3589+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTTGGTGCTGCTGTATACGAGTCGAGCTGATTCAGGAGCTCCTTCGAT
TACATGTCATGCGATGGGAAGTACGCACGACGAGAAGGCGTGGAGAGTTC
TCGACGACGTGGTGAACGAGCTTGGCAGGCTCATTCGCGACGACAAGTAC
GGATTCCCGGGCGTAGGTCTCGTGAGAAGCAAAGTGGAAAAAGAATCAGC
GTCGTCGGATAGCAAGCTTGAGACATTGCTCGATGATCTTGCAGATTCCA
TGACGGATCACATGAATATCAAGTTCGAGGAGCTCGCCAGGATGTCGAGC
AACATGGCAGGTAGGCAAAGCACGGAAACGCGTGTGCCTTCTCGCGAATA
CAACAGCGATGGTCGAAATATGTCATTGAACATGATGTTGCTGTTGGGAT
GCAACGAAACGTTCAGGACTGCGATGAGCGAGCACCGCGTCTACGGCAAC
TTCCAAGGCAATCGCAATATTTTAACCGCTGCTGTATTCCCTGCCACGGT
TCGCTGTTTTCGGACCCGTCCTTGAAACGGCATACGCATGATGTTTGTGG
TGAAGCGTTCCAATAGCGATGGTTTTTTCGCCTCAATCCATTCTGTTCGT
TGCCTTGTTCGCAGGAGGCGTTGCACTGTACTTGCAGAAGGGACAGGAGA
CATTAGACGGTTCGTTGAAGGCCAGCATCACAGGTCTCGGCCAGGAACTG
TCTCCCTCGCTGAAGGGCATCGCTGCCGTGGTGAACAAGTGCCTCGTGAG
TTTATCTGGGGAGGAGACCCCATGCCCCCGGCTCATCATGGTAACGGAGG
ACCCGTCGCCAGGGTCACCGCGTTCCAGATTCGCTCATTTTCGTGGCGAC
ATTCTGCGCAAGCTGTTGGGTAAAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8575:2712..3589+

>mRNA_L-elsbetiae_contig8575.17614.1 ID=mRNA_L-elsbetiae_contig8575.17614.1|Name=mRNA_L-elsbetiae_contig8575.17614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig8575:2712..3589+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTTGGTGCTGCTGTATACGAGTCGAGCTGATTCAGGAGCTCCTTCGAT
TACATGTCATGCGATGGGAAGTACGCACGACGAGAAGGCGTGGAGAGTTC
TCGACGACGTGGTGAACGAGCTTGGCAGGCTCATTCGCGACGACAAGTAC
GGATTCCCGGGCGTAGGTCTCGTGAGAAGCAAAGTGGAAAAAGAATCAGC
GTCGTCGGATAGCAAGCTTGAGACATTGCTCGATGATCTTGCAGATTCCA
TGACGGATCACATGAATATCAAGTTCGAGGAGCTCGCCAGGATGTCGAGC
AACATGGCAGCGCTTGGTGCTGCTGTATACGAGTCGAGCTGATTCAGGAG
CTCCTTCGATTACATGTCATGCGATGGGAAGTACGCACGACGAGAAGGCG
TGGAGAGTTCTCGACGACGTGGTGAACGAGCTTGGCAGGCTCATTCGCGA
CGACAAGTACGGATTCCCGGGCGTAGGTCTCGTGAGAAGCAAAGTGGAAA
AAGAATCAGCGTCGTCGGATAGCAAGCTTGAGACATTGCTCGATGATCTT
GCAGATTCCATGACGGATCACATGAATATCAAGTTCGAGGAGCTCGCCAG
GATGTCGAGCAACATGGCAGGAGGCGTTGCACTGTACTTGCAGAAGGGAC
AGGAGACATTAGACGGTTCGTTGAAGGCCAGCATCACAGGTCTCGGCCAG
GAACTGTCTCCCTCGCTGAAGGGCATCGCTGCCGTGGTGAACAAGTGCCT
CGTGAGTTTATCTGGGGAGGAGACCCCATGCCCCCGGCTCATCATGGTAA
CGGAGGACCCGTCGCCAGGGTCACCGCGTTCCAGATTCGCTCATTTTCGT
GGCGACATTCTGCGCAAGCTGTTGGGTAAAAAAGAGGCGTTGCACTGTAC
TTGCAGAAGGGACAGGAGACATTAGACGGTTCGTTGAAGGCCAGCATCAC
AGGTCTCGGCCAGGAACTGTCTCCCTCGCTGAAGGGCATCGCTGCCGTGG
TGAACAAGTGCCTCGTGAGTTTATCTGGGGAGGAGACCCCATGCCCCCGG
CTCATCATGGTAACGGAGGACCCGTCGCCAGGGTCACCGCGTTCCAGATT
CGCTCATTTTCGTGGCGACATTCTGCGCAAGCTGTTGGGTAAAAAA
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