mRNA_L-elsbetiae_contig8574.17613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8574.17613.1
Unique NamemRNA_L-elsbetiae_contig8574.17613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8574.17613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8574contigL-elsbetiae_contig8574:6028..8322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1248
Cds size1056
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8574.17613.1prot_L-elsbetiae_contig8574.17613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8574 6028..7083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.998555-CDS-L-elsbetiae_contig8574:6027..70831622816939.998555-CDS-L-elsbetiae_contig8574:6027..7083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8574 6028..7083 -
1691683927.912075-CDS-L-elsbetiae_contig8574:6027..70831691683927.912075-CDS-L-elsbetiae_contig8574:6027..7083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8574 6028..7083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.0107026-UTR-L-elsbetiae_contig8574:7083..70841622816940.0107026-UTR-L-elsbetiae_contig8574:7083..7084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8574 7084..7084 -
1691683927.9245296-UTR-L-elsbetiae_contig8574:7083..70841691683927.9245296-UTR-L-elsbetiae_contig8574:7083..7084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8574 7084..7084 -
1622816940.023884-UTR-L-elsbetiae_contig8574:8133..83221622816940.023884-UTR-L-elsbetiae_contig8574:8133..8322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8574 8134..8322 -
1691683927.9359868-UTR-L-elsbetiae_contig8574:8133..83221691683927.9359868-UTR-L-elsbetiae_contig8574:8133..8322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8574 8134..8322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8574.17613.1

>prot_L-elsbetiae_contig8574.17613.1 ID=prot_L-elsbetiae_contig8574.17613.1|Name=mRNA_L-elsbetiae_contig8574.17613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=352bp
MGFIIYRSALHPGSSCSGACGSVSSRSPSPSPVCSSFIYIAWKGFSEVLT
AGWVGLQCFREFVRRRVGLLRLIWSVRWAPPPNGYRRYRKQTRVTAATVR
LLRPVKGQAERAAMKLNISQLVQLKTSSTFKDVDRTMTLIADCLDGVRDA
ATKMVSRGNDADATTALMREEHASAISTLRAEVHRELAELASATSTQYAE
VPELRKQCTHDTKKLQQQFIIDMEALREEFATGMGELRTECIQRVADAEA
KAADAEARAAAAESKAADLVAKFQNRTCSEQRVRELMIHAGCVPEKVVDT
DGPKASSKKATRRGGRAGKGKNYEVAEKGEDSQPEAQSGGSGTNYGVGKG
VG
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mRNA from alignment at L-elsbetiae_contig8574:6028..8322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8574.17613.1 ID=mRNA_L-elsbetiae_contig8574.17613.1|Name=mRNA_L-elsbetiae_contig8574.17613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2295bp|location=Sequence derived from alignment at L-elsbetiae_contig8574:6028..8322- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCTGCGCGCTCACCACCGTCCCCATCGAAAGTTCCCTTGACCTGCG
AGGCGTATAAGAGCAAGCCCTCGCACACGAGAGGAGTCAGGCCGGCCTGC
TGATGCTACGGCGAGTGTCCGACCTCCTGCATATTTTACGAGAGTGGGAG
AATTCAGAAGCGGCTCTGGTCTGCATCGCCGTCGAGCAGGTTAGTTATTT
AATGTACATACATACTCCTTCCGTCCCGGAAAGAAGTCCGATTTGGAAAT
CCCAGATACATATGTATGGTATATTATAGGTACACCGACAGTAGAGGTCG
CCCGGTCTGCTTGTCGTGAAATATGATAAAATGTGCTTTTGCACCATGTA
TGTATGTTATCACACTCCCATCGGTAGGTTTGGAAAAATTGTGGTAAATA
CATGTCCAGCTGGCGGTCAATGTTTGCGCCGGGAGTTCGATCCCCACCTC
AAACAAAACATTTTGTTTTTTTTCGAATAAAACTTTTTTTATTTTGTTTT
TTCTTCGTGCTCTTTTTTTTCACTTCAAAGGTCCCGTTTTTAGGCACCCT
ATAGTCTTGCATCCGATCAAACAGGAAGATTCTATTCTCTCCTCGAAGTA
CCAGTCTATAGAACGCTCTATATATAACCAAAGGGTGTTACCTAAAAAAC
AAACACAGATAAAAACTTTTCCTCGTTCCGCACGATGGAAAAAACGACAC
CCACCCTTGTTTTCCTTACTGATCAGATCTTCGGGAGTTCCGTCTGCGAG
AAAAAATATCTTTAGGAGGGGACGAAAATGGACCATCCCCTGTTTTTTGC
TATTTCTTCATTGTGTGCAGTACCGATGGGAGCATGATGAAAAACAAATG
GCGCAAAAATACCTTTTTATCCCCCGAAACGCCAAACAACCCTTGCTTAC
ATTCCGAAAATCAAAACCTTGCTTATATTTCCGGTCAGAGGGAGTAGTAG
TACAAATGAAGAAATCGCTTAAAACAGGAGAATTTTTGAATTTTTCGCCC
TCTCCTACATACATACAGCGCAAAACTCAGCCCCCCCCGCCTGTCCCCCC
CCATTTTGATCTCCCTCCCCCTCGCCAACCCCGCTAGGTGGACTGGTTTA
TCGGCTGCGCNNNNNNNNNNTTTTTCCCCCCCCCCCACAAACATACCGCC
CAAACCCCCCCCCCCCCCCTTCCTTCCCCGTTTTTTTTCCCCCCCCCCCC
CCCCCCCCTGGTGTGTTCATTTGGGCTTACAACACAAGAATGGGGTTTAT
TATCTACAGGAGCGCGTTACATCCTGGTTCGAGTTGTTCTGGCGCCTGTG
GCAGCGTTTCAAGTCGAAGCCCTTCACCTTCTCCGGTCTGTTCGAGCTTC
ATCTATATAGCGTGGAAAGGTTTCTCCGAAGTACTTACTGCTGGATGGGT
TGGGCTGCAGTGCTTTCGGGAGTTTGTTCGACGCCGGGTTGGCCTTCTTC
GCCTGATCTGGAGCGTTCGATGGGCTCCCCCTCCGAATGGGTACCGCCGC
TACCGCAAGCAAACACGGGTCACTGCCGCCACCGTTCGCCTGCTCAGGCC
GGTCAAGGGGCAGGCTGAGAGAGCCGCCATGAAGCTCAACATTTCGCAGC
TTGTCCAGCTCAAGACATCGTCCACCTTCAAGGATGTCGATCGCACCATG
ACGCTGATCGCTGACTGCCTGGACGGAGTACGAGATGCGGCGACTAAGAT
GGTGTCGAGGGGAAATGACGCTGACGCGACTACAGCGCTGATGCGCGAAG
AACACGCCTCTGCGATATCGACTCTACGCGCGGAGGTTCACAGGGAGCTC
GCGGAACTGGCGTCGGCGACGTCCACTCAATACGCGGAGGTTCCCGAGCT
CCGTAAGCAGTGCACCCACGATACGAAGAAGCTCCAGCAGCAGTTCATCA
TCGACATGGAGGCGCTCCGCGAAGAATTCGCTACTGGCATGGGGGAGCTC
CGCACGGAATGCATCCAGAGGGTGGCCGATGCCGAGGCTAAGGCGGCCGA
TGCCGAGGCTAGGGCAGCCGCTGCCGAATCGAAGGCCGCGGATCTGGTGG
CAAAGTTCCAGAATAGGACCTGCTCCGAGCAACGCGTCCGGGAGCTGATG
ATTCATGCGGGATGTGTGCCAGAGAAGGTGGTCGACACCGATGGGCCTAA
GGCCTCGTCGAAAAAGGCCACCAGGAGGGGTGGTCGGGCCGGGAAAGGCA
AGAACTACGAAGTGGCTGAGAAAGGGGAAGACAGCCAGCCGGAGGCCCAG
TCCGGCGGATCCGGTACCAATTACGGTGTTGGGAAGGGTGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8574:6028..8322-

>mRNA_L-elsbetiae_contig8574.17613.1 ID=mRNA_L-elsbetiae_contig8574.17613.1|Name=mRNA_L-elsbetiae_contig8574.17613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2112bp|location=Sequence derived from alignment at L-elsbetiae_contig8574:6028..8322- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTTATTATCTACAGGAGCGCGTTACATCCTGGTTCGAGTTGTTC
TGGCGCCTGTGGCAGCGTTTCAAGTCGAAGCCCTTCACCTTCTCCGGTCT
GTTCGAGCTTCATCTATATAGCGTGGAAAGGTTTCTCCGAAGTACTTACT
GCTGGATGGGTTGGGCTGCAGTGCTTTCGGGAGTTTGTTCGACGCCGGGT
TGGCCTTCTTCGCCTGATCTGGAGCGTTCGATGGGCTCCCCCTCCGAATG
GGTACCGCCGCTACCGCAAGCAAACACGGGTCACTGCCGCCACCGTTCGC
CTGCTCAGGCCGGTCAAGGGGCAGGCTGAGAGAGCCGCCATGAAGCTCAA
CATTTCGCAGCTTGTCCAGCTCAAGACATCGTCCACCTTCAAGGATGTCG
ATCGCACCATGACGCTGATCGCTGACTGCCTGGACGGAGTACGAGATGCG
GCGACTAAGATGGTGTCGAGGGGAAATGACGCTGACGCGACTACAGCGCT
GATGCGCGAAGAACACGCCTCTGCGATATCGACTCTACGCGCGGAGGTTC
ACAGGGAGCTCGCGGAACTGGCGTCGGCGACGTCCACTCAATACGCGGAG
GTTCCCGAGCTCCGTAAGCAGTGCACCCACGATACGAAGAAGCTCCAGCA
GCAGTTCATCATCGACATGGAGGCGCTCCGCGAAGAATTCGCTACTGGCA
TGGGGGAGCTCCGCACGGAATGCATCCAGAGGGTGGCCGATGCCGAGGCT
AAGGCGGCCGATGCCGAGGCTAGGGCAGCCGCTGCCGAATCGAAGGCCGC
GGATCTGGTGGCAAAGTTCCAGAATAGGACCTGCTCCGAGCAACGCGTCC
GGGAGCTGATGATTCATGCGGGATGTGTGCCAGAGAAGGTGGTCGACACC
GATGGGCCTAAGGCCTCGTCGAAAAAGGCCACCAGGAGGGGTGGTCGGGC
CGGGAAAGGCAAGAACTACGAAGTGGCTGAGAAAGGGGAAGACAGCCAGC
CGGAGGCCCAGTCCGGCGGATCCGGTACCAATTACGGTGTTGGGAAGGGT
GTGGGGATGGGGTTTATTATCTACAGGAGCGCGTTACATCCTGGTTCGAG
TTGTTCTGGCGCCTGTGGCAGCGTTTCAAGTCGAAGCCCTTCACCTTCTC
CGGTCTGTTCGAGCTTCATCTATATAGCGTGGAAAGGTTTCTCCGAAGTA
CTTACTGCTGGATGGGTTGGGCTGCAGTGCTTTCGGGAGTTTGTTCGACG
CCGGGTTGGCCTTCTTCGCCTGATCTGGAGCGTTCGATGGGCTCCCCCTC
CGAATGGGTACCGCCGCTACCGCAAGCAAACACGGGTCACTGCCGCCACC
GTTCGCCTGCTCAGGCCGGTCAAGGGGCAGGCTGAGAGAGCCGCCATGAA
GCTCAACATTTCGCAGCTTGTCCAGCTCAAGACATCGTCCACCTTCAAGG
ATGTCGATCGCACCATGACGCTGATCGCTGACTGCCTGGACGGAGTACGA
GATGCGGCGACTAAGATGGTGTCGAGGGGAAATGACGCTGACGCGACTAC
AGCGCTGATGCGCGAAGAACACGCCTCTGCGATATCGACTCTACGCGCGG
AGGTTCACAGGGAGCTCGCGGAACTGGCGTCGGCGACGTCCACTCAATAC
GCGGAGGTTCCCGAGCTCCGTAAGCAGTGCACCCACGATACGAAGAAGCT
CCAGCAGCAGTTCATCATCGACATGGAGGCGCTCCGCGAAGAATTCGCTA
CTGGCATGGGGGAGCTCCGCACGGAATGCATCCAGAGGGTGGCCGATGCC
GAGGCTAAGGCGGCCGATGCCGAGGCTAGGGCAGCCGCTGCCGAATCGAA
GGCCGCGGATCTGGTGGCAAAGTTCCAGAATAGGACCTGCTCCGAGCAAC
GCGTCCGGGAGCTGATGATTCATGCGGGATGTGTGCCAGAGAAGGTGGTC
GACACCGATGGGCCTAAGGCCTCGTCGAAAAAGGCCACCAGGAGGGGTGG
TCGGGCCGGGAAAGGCAAGAACTACGAAGTGGCTGAGAAAGGGGAAGACA
GCCAGCCGGAGGCCCAGTCCGGCGGATCCGGTACCAATTACGGTGTTGGG
AAGGGTGTGGGG
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