mRNA_L-elsbetiae_contig8572.17612.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8572.17612.1
Unique NamemRNA_L-elsbetiae_contig8572.17612.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.820e-53
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            YTDLP GWSVKT DHQLGF+I DDARVRKTAGSIHIPRVDVVIIEEAA MSLHALSMI AA HSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQ+VLER
Sbjct: 1007 YTDLPSGWSVKTADHQLGFFIGDDARVRKTAGSIHIPRVDVVIIEEAAYMSLHALSMIFAATHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQLVLER 1108
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BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5KBM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM1_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.900e-51
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +TDLPPGWSVKT DHQLGFYI DD RVRKT GSIHIPRVDVV IEEAA MSLHALSMILAAAHS GVHVIGTY+THQLQP RE SG+SISVDNVDRQVVLER
Sbjct:  663 HTDLPPGWSVKTADHQLGFYIGDDTRVRKTVGSIHIPRVDVVKIEEAAYMSLHALSMILAAAHSKGVHVIGTYETHQLQPAREGSGLSISVDNVDRQVVLER 764
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BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 9.170e-43
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            YT+LP GWSVKT DHQLGFY+ DD+ V+KTAGSI   +VDV+IIEEAA M L  LSMILAAAHSSG HVIGTYDTHQLQPV +SSGMSIS DNVDR+V+LE+
Sbjct:  862 YTNLPSGWSVKTADHQLGFYLSDDSYVKKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISRDNVDRKVILEK 963
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BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.040e-42
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = -1 
Query:    1 DHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 267
            D  LGF+I DDARVRKTAGSIHIPRVDVVIIEEA  MSLHALSMILAAAHSSGVHVIGTYDTHQLQ VRESSGMSISVDNVDRQ+VLER
Sbjct:  857 DRVLGFFIGDDARVRKTAGSIHIPRVDVVIIEEAVYMSLHALSMILAAAHSSGVHVIGTYDTHQLQLVRESSGMSISVDNVDRQLVLER 945
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.240e-41
Identity = 75/102 (73.53%), Postives = 88/102 (86.27%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +T+LP GW+VKT DHQLGFY+ DD+ V+KTAGSI   +VDV+IIEEAA M L  LSM+LAAAHSSG HVIGTYDTHQLQPV ESSGMSIS DNV+R+V+LE+
Sbjct:  398 FTNLPSGWNVKTADHQLGFYLGDDSHVKKTAGSIRTLKVDVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILEK 499
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: D7G6J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 6.500e-41
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +TD+P GWSVKT DHQLGFY+ +D+ +RKTAGSI   +VDV+IIEEAA M L  LSMILAAA  SG HVIGTYDTHQLQPV ESSGMSIS DNVDR+V+LE+
Sbjct:  586 FTDMPSGWSVKTADHQLGFYLGNDSEMRKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVDRKVILEK 687
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.070e-41
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +TD+P GWSVKT DHQLGFY+ +D+ +RKTAGSI   +VDV+IIEEAA M L  LSMILAAA  SG HVIGTYDTHQLQPV ESSGMSIS DNVDR+V+LE+
Sbjct:  805 FTDMPSGWSVKTADHQLGFYLGNDSEMRKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVDRKVILEK 906
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.080e-41
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +T+LP GW+VKT DHQLGFY+ DD+ V+KTAGSI   +VDV+IIEEAA M L  LSM+LAAAHSSG HVIGTYDTHQLQPV ESSGMSIS DNV+R+ +LE+
Sbjct:  827 FTNLPTGWNVKTADHQLGFYLGDDSHVKKTAGSIRALKVDVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKFILEK 928
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.110e-41
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            +TD+P GWSVKT DHQLGFY+ DD+ +RKTAGSI    VDV+IIEEAA M L  LSMILAAAH SG HVIGTYDTHQLQPV +SSG SIS DNVDR+V+LE+
Sbjct:  998 FTDMPCGWSVKTADHQLGFYLGDDSEMRKTAGSIRTLNVDVIIIEEAAYMPLRTLSMILAAAHCSGTHVIGTYDTHQLQPVCDSSGRSISKDNVDRRVILEK 1099
[Close]
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Match: A0A6H5K264_9PHAE (Complex1_49kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K264_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.560e-39
Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = -1 
Query:    1 YTDLPPGWSVKTVDHQLGFYIDDDARVRKTAGSIHIPRVDVVIIEEAANMSLHALSMILAAAHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVDRQVVLER 306
            YT+LP GWSVKT DHQL FY+ DD+ V+KT GSI   +VDV+IIEEAA M L  L MILAAAHSSG HVIGTYDTHQLQPV +SSGMSIS DNVDR+V+L +
Sbjct:  601 YTNLPSGWSVKTADHQLEFYLSDDSYVKKTVGSIRTLKVDVIIIEEAACMPLRTLRMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISRDNVDRKVILAK 702
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8572.17612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFQ2_ECTSI2.820e-5392.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBM1_9PHAE3.900e-5188.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE9.170e-4376.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC4_9PHAE8.040e-4291.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWL4_9PHAE1.240e-4173.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J5_ECTSI6.500e-4173.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV89_ECTSI7.070e-4173.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQN9_ECTSI7.080e-4172.55Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KSM3_9PHAE7.110e-4173.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K264_9PHAE1.560e-3972.55Complex1_49kDa domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8572contigL-elsbetiae_contig8572:7881..8188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.9294014-CDS-L-elsbetiae_contig8572:7880..81861622816939.9294014-CDS-L-elsbetiae_contig8572:7880..8186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8572 7881..8186 +
1691683927.8861248-CDS-L-elsbetiae_contig8572:7880..81861691683927.8861248-CDS-L-elsbetiae_contig8572:7880..8186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8572 7881..8186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8572.17612.1prot_L-elsbetiae_contig8572.17612.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8572 7881..8186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8572.17612.1

>prot_L-elsbetiae_contig8572.17612.1 ID=prot_L-elsbetiae_contig8572.17612.1|Name=mRNA_L-elsbetiae_contig8572.17612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
SLKDDLPVDVVHADRHATALTNGLQLVRVVRADDVDSAAVSGGEYHAERM
ERHVRGFLDYDNVHSRDMYRARSLPDARVVVDVEPKLMVDSLHTPPGGQV
GV
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mRNA from alignment at L-elsbetiae_contig8572:7881..8188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8572.17612.1 ID=mRNA_L-elsbetiae_contig8572.17612.1|Name=mRNA_L-elsbetiae_contig8572.17612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=308bp|location=Sequence derived from alignment at L-elsbetiae_contig8572:7881..8188+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCTCAAGGACGACCTGCCTGTCGACGTTGTCCACGCTGATAGACATGC
CACTGCTCTCACGAACGGGCTGCAGCTGGTGCGTGTCGTACGTGCCGATG
ACGTGGACTCCGCTGCTGTGAGCGGCGGCGAGTATCATGCTGAGCGCATG
GAGAGACATGTTCGCGGCTTCCTCGATTATGACAACGTCCACTCTCGGGA
TATGTATCGAGCCCGCAGTCTTCCTGACGCGCGCGTCGTCGTCGATGTAG
AACCCAAGCTGATGGTCGACAGTCTTCACACTCCACCCGGGGGGCAGGTC
GGTGTACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8572:7881..8188+

>mRNA_L-elsbetiae_contig8572.17612.1 ID=mRNA_L-elsbetiae_contig8572.17612.1|Name=mRNA_L-elsbetiae_contig8572.17612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig8572:7881..8188+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCTCAAGGACGACCTGCCTGTCGACGTTGTCCACGCTGATAGACATGC
CACTGCTCTCACGAACGGGCTGCAGCTGGTGCGTGTCGTACGTGCCGATG
ACGTGGACTCCGCTGCTGTGAGCGGCGGCGAGTATCATGCTGAGCGCATG
GAGAGACATGTTCGCGGCTTCCTCGATTATGACAACGTCCACTCTCGGGA
TATGTATCGAGCCCGCAGTCTTCCTGACGCGCGCGTCGTCGTCGATGTAG
AACCCAAGCTGATGGTCGACAGTCTTCACACTCCACCCGGGGGGCAGGTC
GGTGTATCGCTCAAGGACGACCTGCCTGTCGACGTTGTCCACGCTGATAG
ACATGCCACTGCTCTCACGAACGGGCTGCAGCTGGTGCGTGTCGTACGTG
CCGATGACGTGGACTCCGCTGCTGTGAGCGGCGGCGAGTATCATGCTGAG
CGCATGGAGAGACATGTTCGCGGCTTCCTCGATTATGACAACGTCCACTC
TCGGGATATGTATCGAGCCCGCAGTCTTCCTGACGCGCGCGTCGTCGTCG
ATGTAGAACCCAAGCTGATGGTCGACAGTCTTCACACTCCACCCGGGGGG
CAGGTCGGTGTA
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