mRNA_L-elsbetiae_contig8572.17611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8572.17611.1
Unique NamemRNA_L-elsbetiae_contig8572.17611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 5.560e-90
Identity = 138/153 (90.20%), Postives = 144/153 (94.12%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEG+LVIHQARHRYSDVYWLYTAISRATGPSN VVLDDVHRSVSDMPEHTRRSWAT KVSSYL ADVAAGR+DD +   HKDALIE+LLRSYRG CNSCSLE+VWAVYSERQPTLDRLD ALPHTPGNVD+KCLRCN
Sbjct: 1261 FDPPGSCTVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGTCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 1413          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5KBM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM1_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 4.250e-85
Identity = 126/153 (82.35%), Postives = 139/153 (90.85%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTV+G+LVIHQARHR+SDVYWLYTAISRATGP NVV+LDD+HRSVSDM EH RRSWATRKVSSYL ADV  GR+D+ E  QH +AL + LL SY GRCNSC++ELVWAVYSERQPTLDRLDCALPHTPGNVD+KCL+CN
Sbjct:  917 FDPPGSCTVHAVQGRTVDGKLVIHQARHRFSDVYWLYTAISRATGPLNVVILDDIHRSVSDMSEHARRSWATRKVSSYLRADVTGGRLDEGEGNQHNNALAQALLNSYGGRCNSCTIELVWAVYSERQPTLDRLDCALPHTPGNVDVKCLKCN 1069          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5KZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ7_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 4.630e-85
Identity = 140/229 (61.14%), Postives = 146/229 (63.76%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDD----------VEER------------------------------------------------------------------QHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEG+LVIHQARHRYSDVYWLYTAISRATG SN VVLDDVHRSVSDMPEHTRRSWAT KVSSYL ADVAAGR+DD          +EE                                                                    HKDALIE+LLRSYRGRCNSCSLE+VWAVYSERQPTLDRLD ALPHTPGNVD+KCLRCN
Sbjct:  118 FDPPGSCTVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGSSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSELLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 346          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5L0U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U3_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.960e-78
Identity = 111/153 (72.55%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDP G+CTVHAVQGRTV+GRL+IHQARH Y+DVYW+YTAISRATGPSNV V+DD+HRS SDM +  R SW +RKVSSY++ADVAA R+   E  QH++AL+++L RSY GRCN C+ +LVWAVYSERQPTLDRLDCALPHT  NVD+KCL+CN
Sbjct:  205 FDPSGACTVHAVQGRTVQGRLLIHQARHPYADVYWIYTAISRATGPSNVRVIDDIHRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCN 357          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5L8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I4_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.640e-76
Identity = 121/153 (79.08%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDP GSCTVHAVQG TVEG+LV HQARHR+SDV WLYTAISRATGPSNV+VLDDVHRSVSDM E   RSWA RKVSS   ADV AGR+D  E  QHKDALI+ L+ SY GRCNSCS+ELVWAV SERQPTLDRLDCALPHTPGNVD++CL+C+
Sbjct:  934 FDPSGSCTVHAVQGCTVEGKLVTHQARHRFSDVCWLYTAISRATGPSNVLVLDDVHRSVSDMTEQAGRSWANRKVSSCPRADVTAGRVDHGEGNQHKDALIQALVSSYGGRCNSCSVELVWAVNSERQPTLDRLDCALPHTPGNVDVRCLKCD 1086          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.240e-76
Identity = 113/153 (73.86%), Postives = 133/153 (86.93%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEGRL+IHQARH Y+DVYW+YTAISRATGPSNV V+DD++RS SDM +  R SW +RKVSSY++ADVAA R+   E  QH++AL+++L RSY GRCN C+ EL+W VYSERQPTLDRLDCALPHT GNVD+KCL+CN
Sbjct:  650 FDPPGSCTVHAVQGRTVEGRLIIHQARHPYADVYWIYTAISRATGPSNVRVIDDIYRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHELIWTVYSERQPTLDRLDCALPHTIGNVDVKCLKCN 802          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 3.310e-74
Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEG L+IHQARHR++DV+WLYTA+SRATGPS+V V+DD+HRS SDM +  R SW +RKVSSY++ADVAAGR+   E R+H++AL+++LL SY GRC+ C+ ELVWAVYSE+QPTLDRLDC+LPHT  NVD+KCLRCN
Sbjct: 1250 FDPPGSCTVHAVQGRTVEGTLIIHQARHRHADVHWLYTAVSRATGPSSVRVIDDIHRSESDMSDRERVSWVSRKVSSYIYADVAAGRLGPEEGRRHREALVQELLNSYGGRCHRCTCELVWAVYSEQQPTLDRLDCSLPHTAENVDVKCLRCN 1402          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.510e-73
Identity = 111/153 (72.55%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEGRL+IHQARHR++DV+WLYTA+SRATGPSNV V+DD HR  S+M +  R SW +RKVSSY++AD+A+GR+   E  QH++AL ++L R+YRG CN C  ELVWAVYSERQPTLDRLDCALPHT GNVD+KCL+CN
Sbjct: 1059 FDPPGSCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVWVIDDAHRRDSNMSDRERASWVSRKVSSYIYADIASGRLGSDEGGQHREALAQELHRAYRGTCNLCHHELVWAVYSERQPTLDRLDCALPHTIGNVDVKCLKCN 1211          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 1.620e-73
Identity = 110/153 (71.90%), Postives = 133/153 (86.93%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEGRL+IHQARHR++DV+WLYT +SRATGPSNV V+DD+HRS S+M +  R SW TRKVSSY++ADVAAGRI   +  QH++AL+++L RSY GRCN C+ EL+W + SERQPTLDRLDC+LPHT GNVD+KCL+CN
Sbjct: 1313 FDPPGSCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTGVSRATGPSNVRVIDDIHRSESNMSDRERVSWVTRKVSSYIYADVAAGRIKSDDGGQHREALVQELHRSYGGRCNLCNRELIWTINSERQPTLDRLDCSLPHTIGNVDVKCLKCN 1465          
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.840e-73
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 1
Query:    1 FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVVVLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDALIEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCLRCN 459
            FDPPGSCTVHAVQGRTVEGRL+IHQARHR++DV+WLYTA+SRATGPSNV+V+DD+HRS SDM +  R SW +RKVS+Y++ADV+A R+   E  QHK AL+E+LL SY GRC+ C  ELVWA+YSERQPTLDRLDCALPHT GNVD+ CL+C+
Sbjct: 1220 FDPPGSCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVMVIDDIHRSESDMSDRERISWVSRKVSNYIYADVSAERLSADEGGQHKQALVEELLNSYWGRCSLCYCELVWALYSERQPTLDRLDCALPHTIGNVDVNCLKCS 1372          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8572.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFQ2_ECTSI5.560e-9090.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBM1_9PHAE4.250e-8582.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ7_9PHAE4.630e-8561.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0U3_9PHAE1.960e-7872.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8I4_9PHAE1.640e-7679.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWL4_9PHAE2.240e-7673.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE3.310e-7472.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV89_ECTSI1.510e-7372.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B8_9PHAE1.620e-7371.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCI8_9PHAE2.840e-7372.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8572contigL-elsbetiae_contig8572:6966..7424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue4.4e-77
Seed eggNOG ortholog2880.D8LFQ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.9603162-CDS-L-elsbetiae_contig8572:6965..74241622816939.9603162-CDS-L-elsbetiae_contig8572:6965..7424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8572 6966..7424 -
1691683927.8973882-CDS-L-elsbetiae_contig8572:6965..74241691683927.8973882-CDS-L-elsbetiae_contig8572:6965..7424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8572 6966..7424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8572.17611.1prot_L-elsbetiae_contig8572.17611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8572 6966..7424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8572.17611.1

>prot_L-elsbetiae_contig8572.17611.1 ID=prot_L-elsbetiae_contig8572.17611.1|Name=mRNA_L-elsbetiae_contig8572.17611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
FDPPGSCTVHAVQGRTVEGRLVIHQARHRYSDVYWLYTAISRATGPSNVV
VLDDVHRSVSDMPEHTRRSWATRKVSSYLHADVAAGRIDDVEERQHKDAL
IEDLLRSYRGRCNSCSLELVWAVYSERQPTLDRLDCALPHTPGNVDIKCL
RCN
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mRNA from alignment at L-elsbetiae_contig8572:6966..7424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8572.17611.1 ID=mRNA_L-elsbetiae_contig8572.17611.1|Name=mRNA_L-elsbetiae_contig8572.17611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=459bp|location=Sequence derived from alignment at L-elsbetiae_contig8572:6966..7424- (Laminarionema elsbetiae ELsaHSoW15)
TTTGATCCCCCGGGTTCGTGTACGGTGCACGCGGTTCAGGGTCGCACGGT GGAGGGGAGGTTGGTGATCCACCAGGCTCGACACCGGTATTCAGACGTTT ACTGGCTTTACACAGCCATCAGCCGAGCGACGGGGCCCTCAAACGTCGTA GTCCTCGATGACGTCCATCGAAGTGTCAGCGACATGCCTGAACACACCAG GAGGTCGTGGGCGACCAGGAAGGTTTCGAGCTACCTGCACGCCGATGTGG CCGCCGGGCGGATAGATGACGTGGAAGAGAGGCAGCACAAGGACGCCCTT ATCGAAGACCTCTTGCGCTCCTACCGTGGGAGGTGCAACTCATGCTCGCT CGAGCTCGTCTGGGCAGTGTACAGCGAGCGTCAGCCCACGCTTGATCGTC TCGACTGCGCCCTACCCCACACGCCGGGCAACGTTGACATAAAGTGTTTG AGGTGCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8572:6966..7424-

>mRNA_L-elsbetiae_contig8572.17611.1 ID=mRNA_L-elsbetiae_contig8572.17611.1|Name=mRNA_L-elsbetiae_contig8572.17611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig8572:6966..7424- (Laminarionema elsbetiae ELsaHSoW15)
TTTGATCCCCCGGGTTCGTGTACGGTGCACGCGGTTCAGGGTCGCACGGT
GGAGGGGAGGTTGGTGATCCACCAGGCTCGACACCGGTATTCAGACGTTT
ACTGGCTTTACACAGCCATCAGCCGAGCGACGGGGCCCTCAAACGTCGTA
GTCCTCGATGACGTCCATCGAAGTGTCAGCGACATGCCTGAACACACCAG
GAGGTCGTGGGCGACCAGGAAGGTTTCGAGCTACCTGCACGCCGATGTGG
CCGCCGGGCGGATAGATGACGTGGAAGAGAGGCAGCACAAGGACGCCCTT
ATCGAAGACCTCTTGCGCTCCTACCGTGGGAGGTGCAACTCATGCTCGCT
CGAGCTCGTCTGGGCAGTGTACAGCGAGCGTCAGCCCACGCTTGATCGTC
TCGACTGCGCCCTACCCCACACGCCGGGCAACGTTGACATAAAGTGTTTG
AGGTGCAACTTTGATCCCCCGGGTTCGTGTACGGTGCACGCGGTTCAGGG
TCGCACGGTGGAGGGGAGGTTGGTGATCCACCAGGCTCGACACCGGTATT
CAGACGTTTACTGGCTTTACACAGCCATCAGCCGAGCGACGGGGCCCTCA
AACGTCGTAGTCCTCGATGACGTCCATCGAAGTGTCAGCGACATGCCTGA
ACACACCAGGAGGTCGTGGGCGACCAGGAAGGTTTCGAGCTACCTGCACG
CCGATGTGGCCGCCGGGCGGATAGATGACGTGGAAGAGAGGCAGCACAAG
GACGCCCTTATCGAAGACCTCTTGCGCTCCTACCGTGGGAGGTGCAACTC
ATGCTCGCTCGAGCTCGTCTGGGCAGTGTACAGCGAGCGTCAGCCCACGC
TTGATCGTCTCGACTGCGCCCTACCCCACACGCCGGGCAACGTTGACATA
AAGTGTTTGAGGTGCAAC
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