mRNA_L-elsbetiae_contig8508.17537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8508.17537.1
Unique NamemRNA_L-elsbetiae_contig8508.17537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: D8LIM6_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM6_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.010e-58
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 1
Query:    1 MGSMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVGVGLAHRGIAALEYEASWGVWFEM 324
            MGS+EWFKEVGPLI+KTGETPPMEC+QNAGDL YVPANW+HMTLNIGESIGVGGQAVY GE RL+DGL+LLQ+RP DPE+LHA+GVGLAHRGI+ALEYE   GV  EM
Sbjct:    1 MGSLEWFKEVGPLIEKTGETPPMECIQNAGDLFYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDGLELLQQRPGDPELLHAIGVGLAHRGISALEYEGE-GVKIEM 107          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A6H5K503_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K503_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 8.650e-54
Identity = 87/106 (82.08%), Postives = 97/106 (91.51%), Query Frame = 1
Query:    1 MGSMEWFKEVGPLIKKTGETPPMECMQ---NAGDLIYVPANWKHMTLNIGESIGVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVGVGLAHRGIAALEYEASWG 309
            MGS+EWFKEVGPLI+KTGETPPMEC+Q   NAGDLIYVPANW+HMTLNIGESIGVGGQAVY GE RL+DGL+LLQ+RP DPE+LHA+GVGLAHRGI+ALEYE   G
Sbjct:  314 MGSLEWFKEVGPLIEKTGETPPMECIQAMCNAGDLIYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDGLELLQQRPGDPELLHAIGVGLAHRGISALEYEGEGG 419          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A7S2RCI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCI2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.750e-20
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    7 SMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVGVGLAHRGIA 282
            S +WF++V P +    ETP ++C+Q  G+++Y+PA WKH+TLNIGE IGVGGQA Y  + RLRD L  L++ PDD  +L   G GLA   +A
Sbjct:  120 SWDWFRQVLPKVPP--ETPLLQCVQRPGEVLYLPAGWKHLTLNIGEVIGVGGQAPYSTQARLRDALVGLRKNPDD--LLSLKGAGLAKAQMA 207          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A7S2RCS8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCS8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.980e-20
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    7 SMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVGVGLAHRGIA 282
            S +WF++V P +    ETP ++C+Q  G+++Y+PA WKH+TLNIGE IGVGGQA Y  + RLRD L  L++ PDD  +L   G GLA   +A
Sbjct:  120 SWDWFRQVLPKVPP--ETPLLQCVQRPGEVLYLPAGWKHLTLNIGEVIGVGGQAPYSTQARLRDALVGLRKNPDD--LLSLKGAGLAKAQMA 207          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A7S1KZW4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1KZW4_ALECA)

HSP 1 Score: 67.0 bits (162), Expect = 1.450e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    7 SMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVG 255
            S +WF+ V P +    +  P+ECMQ  G+++Y+P  W H+T+N GE+IG+G QAV+  +  + D L L      DPE    VG
Sbjct:    7 SRQWFERVYPTLP--ADLLPVECMQEPGEVMYLPGAWAHLTVNSGEAIGLGAQAVW--KQSVEDPLLLEAANQGDPEAQMLVG 85          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A482SJA5_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJA5_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 5.420e-8
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   64 PMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQ 165
            P+ECMQ+ GD++Y+P  W HMT+NIGE+I +GGQ
Sbjct:  134 PLECMQHPGDILYLPPMWSHMTMNIGETIAIGGQ 167          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: K1PPF3_CRAGI (JmjC domain-containing protein 8 n=4 Tax=Crassostrea gigas TaxID=29159 RepID=K1PPF3_CRAGI)

HSP 1 Score: 56.6 bits (135), Expect = 4.700e-7
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   10 MEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQA---------VYGGEMRL--------RDGLQLLQER-----------PDDPEVLHAVGVGLAHRG 276
            MEW+ +V P +  T +  PMEC+Q AG+++Y+P    H T+N+G+++ +G Q          ++  E+ L        RD  +LLQER           PD+ EV+  +G  LA  G
Sbjct:  292 MEWYSKVYPSL--TEDHAPMECVQEAGEILYLPEGTYHGTINLGDTVAIGIQKKLAATETEKLFYKELNLERAAPGANRD--KLLQERIKIFKKLHKLLPDNTEVMMKLGQALADSG 404          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: UPI0003F08594 (uncharacterized protein LOC102807379 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08594)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 SMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQ 165
            S++WF EV P ++  GE  P+EC+Q AG+++  P ++ H TLNIG+++ +G Q
Sbjct:  282 SLDWFNEVYPHLE--GEEKPIECIQEAGEILSQPESFYHSTLNIGDTVAIGIQ 332          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: A0A1D1VFG1_RAMVA (JmjC domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VFG1_RAMVA)

HSP 1 Score: 54.7 bits (130), Expect = 2.240e-6
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   10 MEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVG 159
            M+WF  + P +  +G   PMEC+Q AG+++Y+PA W H +++IG+++ VG
Sbjct:  311 MDWFYRLYPNL--SGNQFPMECVQRAGEILYIPAFWYHASISIGDTVSVG 358          
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Match: UPI001B889F0D (uncharacterized protein LOC121367556 isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F0D)

HSP 1 Score: 54.7 bits (130), Expect = 2.240e-6
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 MEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESIGVGGQ 165
            ++WF +V P++ +T +  P+EC+Q AG++IY+P    H T+NIG+++ VG Q
Sbjct:  316 LDWFSKVYPVLSETQK--PVECVQQAGEIIYLPEGMYHGTINIGDTVAVGIQ 365          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8508.17537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIM6_ECTSI2.010e-5882.41TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K503_9PHAE8.650e-5482.08JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2RCI2_9STRA1.750e-2050.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RCS8_9STRA2.980e-2050.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1KZW4_ALECA1.450e-1139.76Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A482SJA5_9ARCH5.420e-861.76JmjC domain-containing protein n=1 Tax=archaeon Ta... [more]
K1PPF3_CRAGI4.700e-732.48JmjC domain-containing protein 8 n=4 Tax=Crassostr... [more]
UPI0003F085941.630e-643.40uncharacterized protein LOC102807379 n=1 Tax=Sacco... [more]
A0A1D1VFG1_RAMVA2.240e-642.00JmjC domain-containing protein n=1 Tax=Ramazzottiu... [more]
UPI001B889F0D2.240e-642.31uncharacterized protein LOC121367556 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8508contigL-elsbetiae_contig8508:140..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8508.17537.1prot_L-elsbetiae_contig8508.17537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8508 140..3219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816933.7607892-CDS-L-elsbetiae_contig8508:139..2801622816933.7607892-CDS-L-elsbetiae_contig8508:139..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 140..280 -
1691683923.3201113-CDS-L-elsbetiae_contig8508:139..2801691683923.3201113-CDS-L-elsbetiae_contig8508:139..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 140..280 -
1622816933.773023-CDS-L-elsbetiae_contig8508:806..9081622816933.773023-CDS-L-elsbetiae_contig8508:806..908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 807..908 -
1691683923.3298779-CDS-L-elsbetiae_contig8508:806..9081691683923.3298779-CDS-L-elsbetiae_contig8508:806..908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 807..908 -
1622816933.7839003-CDS-L-elsbetiae_contig8508:3138..32191622816933.7839003-CDS-L-elsbetiae_contig8508:3138..3219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 3139..3219 -
1691683923.342246-CDS-L-elsbetiae_contig8508:3138..32191691683923.342246-CDS-L-elsbetiae_contig8508:3138..3219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8508 3139..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8508.17537.1

>prot_L-elsbetiae_contig8508.17537.1 ID=prot_L-elsbetiae_contig8508.17537.1|Name=mRNA_L-elsbetiae_contig8508.17537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MGSMEWFKEVGPLIKKTGETPPMECMQNAGDLIYVPANWKHMTLNIGESI
GVGGQAVYGGEMRLRDGLQLLQERPDDPEVLHAVGVGLAHRGIAALEYEA
SWGVWFEM
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mRNA from alignment at L-elsbetiae_contig8508:140..3219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8508.17537.1 ID=mRNA_L-elsbetiae_contig8508.17537.1|Name=mRNA_L-elsbetiae_contig8508.17537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3080bp|location=Sequence derived from alignment at L-elsbetiae_contig8508:140..3219- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCGATGGAATGGTTCAAGGAAGTCGGACCGCTCATCAAGAAGAC CGGCGAGACGCCCCCGATGGAGTGCATGCAGGTCAGAGGTGTTAAAATGC ACCCCCGGTGGAGTAGTGCATGCAGGTCGGAGGTGTTAAAATGCACCCCC GGTGGGAGTAGTAGTGCATGCAGGTCGGAGGTGTTAAAATGCACCCCCGG TGGGAGTAGTGCATCAGGTCAGAGGTGTTAAAATGCACCCCCGGTGGGAG TAGTGCGTGCAGGTCAGAGGTTTTAAAAATTTACCCCCGATGGAGTAGTG CATGCAGGTCAGAGGTGTTAAAGATTTACCCCCGATGGAGTAGTGCATGC AGGTCAGAGGTGTTAAAAAATTTACCCCCGATGGAGTAGTGCATGCAGGT CAAAGGTGTTAAAATACACCCCCGATGGAGTAGTACATGCAGGTTAGAGG TGCTCGTGTGTATTGCTCAAGTGCTAGATAGCGTGTGCAAGACCTGTCCT GTTTTTGCCGTGTTTCTGCATATGTAGCTCTTGAGATGACAGCGGCAGAG GCACGCGTGCGCGTGTGCTCTTCTTCAGTGTTATTTGGACTAACTTTCAC GAGGAGGCCAAAGATGAGGTCCTTTGTGGTGCCAGTGCTCGGGTGCTGAG ACGTCCGTTCGCTAGGCGGAAAGAGCAGGTCTGTATGTAGCTCCTGTAAC TGTCCAGGACGAAAGAGCAGGAGCAATGAAGCGGATCGACGATTCCTCGG TCGCGGAGCTTGATAATATTTTACCGATCACGAGGTGCGCCGGGGTCTCG CAGTAAAAAATCACGAGCATTTAAAGAAACCCCCCCCCCGCCTCCCGGGC CAGGCGCCCGCGTGCACCCGTTGCGCCGGCCCTAGGAGCCCGCATCCTCC ACTGCGGACGAAACAAACACCATAGGGCATACGACTTGCTGCTCGTAGCT AGTGTCGGTGCGGATGTTGAGCCCTAAATCGCTCTGTGTGTGTCGAGTCA GAGCTCTCTTCCGGCACACCTTTGGTGCGCTCGGCCAGGCCGGCAGCAGC AGCAGACGGCAGTGTCAAGGGTTGCTGCTGTGATACCTACCCCCCCTGAT GGCGTGAAGGGGGTGATCTGCACTCCTGAAACCATGCTCTCGTCAATGTG CGTAGTCTGCTAAGGGATTAAGAAGGCGCGGCTTGCGCAAAAAATCGTGC TGCAGCCTGTCTCTCAGCTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTTCCCTATCTAAATCGTGCGATGCCAAAGGGTTATT GCTGTGACCTAACTAGCCGCTAAATTACCTCTACAATTGTAAAGTGAAAG TGAATATTGTTACAAATCTCTGCTACATAGCCTCGGAATCGCTGTCGGGA TTAGTTCCTGGACGCTGAGATGTTAGCGTCTCCGTGTGGGGACTGTTCTT CTGAGGCCCTGTGTTTTTCGCCTGTCCCAGGATGTCCCTCCTGAAAATCC TCTGGCGTGTGTACTTCCTAAAAAAGTTAGTCCAAGTAACACTGTTTTGC GTGTGATGAGCCGATGTTGTATGCGGTACTACATACTCCTATTTTAGAAG TACATGTGTATATTTATCGAAAACAAACATATATCTGTAAACATTTCCAT TTCCATTAAAATCACAGGACCACCCCTCGGGGAGGGGAGGGGAGGGGAGG GGAGAGGACATCGCGCGTGCTTGCGTGCTGTCCCCATATAAATAAAGGCT TCGGACAGCGGCTTGCGTTGTGCCTCCCTGTTGCCTCGTCGTAATCGCTC ACAAAATCTCGGCCGCTCCCCCCGCCCCCCGCTGCCTCTTGAGGCTTCTC TCTTTCTAAAAAAAATAAACAAAAAAATGTTTTTCTACTCGGCCGGCCCA AATATTACGTCACTATGTGGAATACCCAAAATTCTCGCGGGAGTCCCGTC TCCAATATGGGTTAGGTTCCATTTTGGATTATCTGCTTATCTTTCAAAAG GAATCAAAGATGGAACCTACCCCACACTAGAGCCAAGGACTCGATATGGG GTTCAAACGGCATACAGTAGTAGTGACGTACTATTTGGCGAAGCGAGAGC AGAAAAACAACCTATAATATCAGAAGAGTTCAACATCTACATATCTCTCT CCCCTGCTGCAAAGATTTAAAGATTTGCGAGGTCGGCCAACAAGTATATA TTCCAGACGCTTCTCTCTTTGTTTTCCGCGGCGCGAATCAATCCCGTCGA CTGCTGCTGCTGCCATCCTTGCTGCCATCCATCCCCGAAACACACCACCA CCGGCCGGCAGAACGCGGGCGACCTGATCTACGTGCCCGCCAACTGGAAG CACATGACCCTCAACATCGGCGAGAGCATTGGGGTGGGCGGCCAGGCCGT CTACGGCGGAGAGGTGAGTAACTAACTGCCATTGCGATTACGCTTTTCGA GTTCAGAAGTTATTACTTATTTTAATCTTACCTCTCCCCTCCCCTCCCTG GCTCCACTCTTTTTTTTGCTTATTTTTTTGCTTATTTTTTATTCTTTTGC TCTTTGGGTGGGAGAAAAGTGGTACATTATGTACACACACACTTTGCTCT CTTTGACGGCAAGAGGCGGTGGCGGGGCGGGCTGCACAGGTGTCGATTTG CGGGGGGGGGCCTGAGATTTTGATGGAAGTGTTGTCCCTCGACGAAGAAG AAGAATGGTCTCTTGTGAGATCCAGAATGACAAAAGAGTTGTTTTTTCTC GCTTGCTTCTCTTGCCCACCTGACGAGCGCTTCGCCTCTTTTCTTATCTT GCCCCCTGGACAAAGCACCCCGCCATATCATCGCGCTGTGTTTTCCGTTT GCCGTGCCCCTTCCTCCGCGCATGGCATGCTCTTGCCGCTGTTTGTGTGT GTGTGTTGGGCCCCGTCTGGCGACCCTTTCGTGGGACAGATGCGCTTGCG CGACGGGCTCCAACTTCTTCAGGAGAGGCCCGACGATCCTGAGGTTCTGC ACGCGGTAGGCGTGGGACTGGCCCACCGAGGGATTGCGGCTCTCGAGTAC GAGGCGAGTTGGGGAGTGTGGTTTGAGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8508:140..3219-

>mRNA_L-elsbetiae_contig8508.17537.1 ID=mRNA_L-elsbetiae_contig8508.17537.1|Name=mRNA_L-elsbetiae_contig8508.17537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig8508:140..3219- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCGATGGAATGGTTCAAGGAAGTCGGACCGCTCATCAAGAAGAC
CGGCGAGACGCCCCCGATGGAGTGCATGCAGATGGGATCGATGGAATGGT
TCAAGGAAGTCGGACCGCTCATCAAGAAGACCGGCGAGACGCCCCCGATG
GAGTGCATGCAGAACGCGGGCGACCTGATCTACGTGCCCGCCAACTGGAA
GCACATGACCCTCAACATCGGCGAGAGCATTGGGGTGGGCGGCCAGGCCG
TCTACGGCGGAGAGAACGCGGGCGACCTGATCTACGTGCCCGCCAACTGG
AAGCACATGACCCTCAACATCGGCGAGAGCATTGGGGTGGGCGGCCAGGC
CGTCTACGGCGGAGAGATGCGCTTGCGCGACGGGCTCCAACTTCTTCAGG
AGAGGCCCGACGATCCTGAGGTTCTGCACGCGGTAGGCGTGGGACTGGCC
CACCGAGGGATTGCGGCTCTCGAGTACGAGGCGAGTTGGGGAGTGTGGTT
TGAGATGATGCGCTTGCGCGACGGGCTCCAACTTCTTCAGGAGAGGCCCG
ACGATCCTGAGGTTCTGCACGCGGTAGGCGTGGGACTGGCCCACCGAGGG
ATTGCGGCTCTCGAGTACGAGGCGAGTTGGGGAGTGTGGTTTGAGATG
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