mRNA_L-elsbetiae_contig8504.17533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8504.17533.1
Unique NamemRNA_L-elsbetiae_contig8504.17533.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8504.17533.1 vs. uniprot
Match: D8LKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 4.490e-105
Identity = 180/226 (79.65%), Postives = 191/226 (84.51%), Query Frame = 1 
Query:  256 MSWAEPADMDTLSDLPPVS-VPVGGKVSNLSRGSSS--KQQKTSRRVGGASKSERRLLMEAKAGVGAAIAEDRQERLLAKRRTRKCVRCLYYANKVVGVAACVFTSGLNLALVYMGPDFRLHNRLVRSYLVSFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHSRGTVWFYLELASFVALQAMAVMAVVLNVCLREVLERSGALGKRRGKRSA 924
            MSWAEPADMDTLS+LP  S V   G+   LSR +SS  +  K+    GGASKSERRLLMEAKAGVGAAIAEDRQERL+AKRR R+ VR LYYA KVVGVAACV+TSGLN  LVYM PDF L +RLVRSYLV FGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD + SRGTVWF LELASFVALQ M  MAVVLNVCLREVLERSGA GKRRGK+SA
Sbjct:    1 MSWAEPADMDTLSELPRQSMVGSSGRPPKLSRTTSSVGRSAKSRGGSGGASKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGAFGKRRGKKSA 226
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BLAST of mRNA_L-elsbetiae_contig8504.17533.1 vs. uniprot
Match: A0A6H5JH79_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH79_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 6.590e-78
Identity = 128/159 (80.50%), Postives = 135/159 (84.91%), Query Frame = 1 
Query:  460 DRQERLLAKRRTRKCVRCLYYANKVVGVAACVFTSGLNLALVYMGPDFRLH----NRLVRSYLVSFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHSRGTVWFYLELASFVALQAMAVMAVVLNVCLREVLERSGALGKRRGKRSA 924
            DRQERL AKRR R+ VR LYYA KVVGV AC +TSGLN  LVYM PDF       + LVRSYLV FGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD + SRGTVWF LELASFVALQ + VMA+VLNVCLREVLERSGALGKRRGK+SA
Sbjct:    8 DRQERLAAKRRARRIVRVLYYAMKVVGVGACFYTSGLNATLVYMRPDFGRELLASSLLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFSLELASFVALQTVGVMALVLNVCLREVLERSGALGKRRGKKSA 166
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BLAST of mRNA_L-elsbetiae_contig8504.17533.1 vs. uniprot
Match: A0A835YSD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.080e-18
Identity = 64/161 (39.75%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:  439 VGAAIAEDRQERLLAKRRTRKCVRCLYYANKVVGVAACVFTSGLNLALVYMGPDFRLHNRLVRSYLVSFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAW--LCFDPAHSRGTVWFYLELASFVALQAMAVMAVVLNVCLREVLERSGALGKRRGK 915
            V  A+ E  +E  +A+RR R CV   Y+  K   VA  V     N+ ++    +  L  R VR YL+ F +  +LAELDT FA+ NFRALQKWW KA FYVF+    L + P  + G     L+LA+   L A+A+  V L  CLR +LE++     R+ K
Sbjct:   70 VRKAMEEVAREAAIARRRARACVTYSYWVLKSTAVATHVLMITTNVWVLARRHEPDLRERAVRGYLIPFSLAALLAELDTRFARDNFRALQKWWCKALFYVFLGTVNLGWTPLGALGRPLTRLQLATAGVLCALALGNVALYTCLRRLLEKTVLRKLRKAK 230
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BLAST of mRNA_L-elsbetiae_contig8504.17533.1 vs. uniprot
Match: A0A6H5JBH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.110e-11
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  256 MSWAEPADMDTLSDLPPVS-VPVGGKVSNLSRGSSSKQQKTSRRVG--GASKSERRLLMEAKAGVGAAIAE 459
            MSWAEPADMDTLS+LP  S V   G+   LSR +SS  +    R G  GASKSERRLLMEAKAGVGAAIAE
Sbjct:    1 MSWAEPADMDTLSELPRQSMVGSSGRPPKLSRTASSVGRSAKSRGGSRGASKSERRLLMEAKAGVGAAIAE 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8504.17533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKH2_ECTSI4.490e-10579.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH79_9PHAE6.590e-7880.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YSD9_9STRA3.080e-1839.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JBH1_9PHAE2.110e-1167.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8504contigL-elsbetiae_contig8504:1720..5205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002950.1
Exons4
Model size975
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8504.17533.1prot_L-elsbetiae_contig8504.17533.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8504 1720..4950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816933.460335-CDS-L-elsbetiae_contig8504:1719..19511622816933.460335-CDS-L-elsbetiae_contig8504:1719..1951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 1720..1951 -
1691683923.1047606-CDS-L-elsbetiae_contig8504:1719..19511691683923.1047606-CDS-L-elsbetiae_contig8504:1719..1951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 1720..1951 -
1622816933.471636-CDS-L-elsbetiae_contig8504:2877..30131622816933.471636-CDS-L-elsbetiae_contig8504:2877..3013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 2878..3013 -
1691683923.1147952-CDS-L-elsbetiae_contig8504:2877..30131691683923.1147952-CDS-L-elsbetiae_contig8504:2877..3013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 2878..3013 -
1622816933.4841812-CDS-L-elsbetiae_contig8504:3486..36341622816933.4841812-CDS-L-elsbetiae_contig8504:3486..3634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 3487..3634 -
1691683923.1275215-CDS-L-elsbetiae_contig8504:3486..36341691683923.1275215-CDS-L-elsbetiae_contig8504:3486..3634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 3487..3634 -
1622816933.494088-CDS-L-elsbetiae_contig8504:4746..49501622816933.494088-CDS-L-elsbetiae_contig8504:4746..4950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 4747..4950 -
1691683923.1391058-CDS-L-elsbetiae_contig8504:4746..49501691683923.1391058-CDS-L-elsbetiae_contig8504:4746..4950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8504 4747..4950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816933.50404-UTR-L-elsbetiae_contig8504:4950..52051622816933.50404-UTR-L-elsbetiae_contig8504:4950..5205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8504 4951..5205 -
1691683923.1517177-UTR-L-elsbetiae_contig8504:4950..52051691683923.1517177-UTR-L-elsbetiae_contig8504:4950..5205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8504 4951..5205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8504.17533.1

>prot_L-elsbetiae_contig8504.17533.1 ID=prot_L-elsbetiae_contig8504.17533.1|Name=mRNA_L-elsbetiae_contig8504.17533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
MSWAEPADMDTLSDLPPVSVPVGGKVSNLSRGSSSKQQKTSRRVGGASKS
ERRLLMEAKAGVGAAIAEDRQERLLAKRRTRKCVRCLYYANKVVGVAACV
FTSGLNLALVYMGPDFRLHNRLVRSYLVSFGVGGVLAELDTPFAKANFRA
LQKWWFKAPFYVFMAWLCFDPAHSRGTVWFYLELASFVALQAMAVMAVVL
NVCLREVLERSGALGKRRGKRSAASRRRRRGGAGSSASSR
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mRNA from alignment at L-elsbetiae_contig8504:1720..5205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8504.17533.1 ID=mRNA_L-elsbetiae_contig8504.17533.1|Name=mRNA_L-elsbetiae_contig8504.17533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3486bp|location=Sequence derived from alignment at L-elsbetiae_contig8504:1720..5205- (Laminarionema elsbetiae ELsaHSoW15)
GGCTAGGGAGCCGGGACAGACCAGTGGCAGATCTCGAGCACGACCCGCTG
GGAAAGTTATCTTCCCGGCCCTCCACATATAGCCCTCCTGGCGAGCTATC
CCAGCGTTGCAGACAATTCTGTGTGTCGGCGCGTATATACTTCGCTGAAC
AGACGTCAACGGGTGAGAGTTTTGGTATCCCGCTACAGGGGTGTCAACAA
ACCAGCAACCAACAAAATAACGCACCACGACGGCTTCTTCTCGGACGCTA
GCGAGATGTCGTGGGCAGAGCCTGCCGACATGGACACGCTGAGCGATCTG
CCGCCGGTTTCTGTTCCAGTGGGGGGCAAGGTGTCCAACCTGTCTCGAGG
CTCCTCGTCGAAGCAGCAGAAGACGTCGAGAAGGGTCGGAGGCGCTTCCA
AGTCGGAGCGGAGACTGCTGATGGAGGCAAAAGCTGGGGTTGGGGCTGCC
ATAGCAGAGGTGCGCGATATTTACCTGTTTTGGCCACCTGTGTGATGGTT
GAATGTCGATACGGGGTGGAAGAACAAATTTAAGGCCTACAGCAGCAGCA
CTGCCTGGTTTGTGTACATAATTACGTACCAGACAGAGAGGGGAGGGTTC
ATGTAATTTGCTTCCGGTACCGAGAGGGGGAGAAAGACAGGGAGTGAAGA
AATTTGGGCTCGAGGTGCGTTGGACACACAGTCTTGATGCTAAACCTCGC
GGTAAAACGGAAGTACACCGCTTGCGTACAGCAGTAGTGTACGGAGGTTT
GACCGTCCGCGCGGACAGCACGACGCACGAGCTCACCATGCCGGTCGCTG
GTGTGATACATACACCAGAAGCCCCCCATCACCCCCCCCCCCACGAGGCT
TCAGCAAGTCGTGCTGCGTCGTGGGGAATGCGTCACAGGTCACCCCTTAC
CATATACAGCGCAGAGAAACCATCGCGTCTGCTGCTGTGTCTCCTGTCTT
CGCTTGCACACTAGATGGTGTATATAATGTAATGATGTACCGCCGTCGGT
GGCACAAGATACCACCCCCCCCCCTGGACAGATTTTCAAAGCTCGATTCC
TCTCCGGCAAGAAGAGTGCGAGTGCCGAACGGGGTGGTGTTGGAGAGGTC
TAGTCGAGAGCAGACCCGAAAATGTGTCGTTTGGCACTGGCAACCTTCTT
CATTACGGAGTAGTAATGGAGCTCTACAAAGTCGGTCCAGGGGGTGTGGT
ATATTGTGTCACCTACCATATGTACGCGGTATGCATGTACATAAATAGGT
TGGCGCCAAATACATGCATGCGTATGTACATTAGCCGTTGTCTCTCGACA
CCCACACGTCCGCTGTGTCCTGCAGTGACGCACACACGGGTTGCTTGTCG
ATGCGGTAAAAGCAAGCACCGTTTTTGAGTGTGGCGTCTTGTCTCTGGGT
GCCCGACTGCTTGCTGCTGCTTGCTGCTGCTTGCTGCTGCTCGGGCTCTT
ATGTAAATTTTACCGCGGCACCCCGCTATGTCCATCCATCGTAATTGTGC
TCGCTCGCTCGCTGGACGTCGGACTGGACCGGCTCGGCTGGTTTTGGCGT
TTGGGCGGGCCGCGGGAGCAGGACAGACAGGAGCGCCTGCTCGCGAAGCG
AAGAACCCGGAAGTGCGTGCGGTGTCTGTACTACGCCAACAAGGTGGTCG
GGGTCGCGGCCTGCGTCTTCACCTCGGGGCTCAACCTGGCCCTCGTCTAC
ATGGGGCCGGACTTCCGACGTGAGATGGATTTTTTGTGCGCAATCGCTAC
GCTTCACGTATGTAGGGGCTAAAGGTATGAGAGGTGTAGATTGTGTGGAC
ACATTGGAACTCCTCCCATTATTGGCATATTTGTATTCTGCCCCACTGGC
ACCCCTTCCTCCACTACGACTAGCTACACAACCCAACCGGAGTCACACAG
AAGGGGGGGGGGGGTGTACCCCCTCCTGCGATGCCTGCCTTAGACGTTTT
TATCGCGAGCAGGTGTGTATGTACGTACGTATGTACGTGGTTGTCTTGAC
GACCGGACTACTACTATATATATATCCGTGTTCCATTGCGACGTCTCCCG
AGCCGGTCTGTTATTTAAGTTGTCCCGTTATCCTGGTGCTGCTCTGATGG
GGTTCCTGCCGGGTATCCCGTAATCCCGTGATGTTGCTGTTGGTGTTGAT
TGGCCCTGGTCTTGTTGTTGCTGCTGCCCGGCCGGCCACCAGTCCACAAC
AGGCTCGTGCGGTCGTACCTCGTGTCGTTCGGCGTTGGGGGCGTGCTCGC
GGAGCTGGACACGCCCTTCGCCAAGGCTAACTTTCGGGCGCTCCAGAAGT
GGTGGTTCAAGGCTCCGTTTTACGTCTTGTGAGTTGTTCTATCTTCACAG
CGTGCGTCTCTTGGTTGCAAACAGGGAGAAGAAGAGAGGCTTTTTGCCAT
CTGGCAAGAGGGCCTTGGTGCGACTCGCTTTCCACAACGAGGGGATCCTG
TTTGGATGCTTGAGAGGGGACAAAGAGCGGGGAGGGGGGGGGGGGGGGGG
GTAAAAACACTATAAAAAAATTTGCGCCAAGGGGGGGGAAATACGAGAAC
CTCTATGCCTAAGAGGGGGCCGGCCACNNNNNNNNNNGTGGGGGGGGGGG
TGGGTGGGTGGGTGGCGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGACCAAAACTGATT
CAAATGTATGTCCAAGGGAGGGGAAACACGGGAGCCTCTTGGGCCAAGGG
GGGGCACGGCGATACAGCCGCACCAGGGGACCATCCCCTCCCCCTCTTTG
CGAGGTGCTTGTTGGGATCGACCCTTCAGCAAGCAAGAAACCCAGCCGAA
CACTCCGCGGCCTGCCCACATCCCGACCATTCGTCTCGCACCCTGCCCCG
TTTCCTCTGCTGCTCACCTCGGCATACATACACGCTATATGTATATACGT
ACTCACGCGAAACAACGACTCAATCGACCCAAAAATAGCCAATATATGTG
TACCTGGATTTGCGGATTTTGTGCGAGTATATCTTGGACCAGAAAAAGGG
GGTGTTATTTAGTATGCCTTCAACAGTCCCCTCTGGAATAACTTTTTCTC
GGACAGGACGTAGACCGCTGACATTTGTATACATATATATCAATTTAAAA
ATCCCAACAATCCGACCGAATGGATCCACACGCAACGCGGGCGACGTCTT
CGCTTTTTTTTCGCCGCCGCCGCCGCCGCCGCCACCGCCACTCAACGCGC
GCAGCATGGCCTGGCTGTGCTTCGACCCCGCACACTCCCGAGGAACCGTG
TGGTTCTACCTCGAGCTCGCGTCGTTCGTAGCCCTCCAGGCGATGGCGGT
GATGGCGGTCGTGCTCAACGTGTGCCTGAGGGAGGTGCTCGAGAGGAGCG
GGGCCCTCGGAAAGCGGCGTGGCAAGAGGTCGGCGGCGTCTAGGCGTCGG
CGGCGAGGCGGGGCTGGATCGTCGGCTTCGTCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8504:1720..5205-

>mRNA_L-elsbetiae_contig8504.17533.1 ID=mRNA_L-elsbetiae_contig8504.17533.1|Name=mRNA_L-elsbetiae_contig8504.17533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig8504:1720..5205- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTGGGCAGAGCCTGCCGACATGGACACGCTGAGCGATCTGCCGCC
GGTTTCTGTTCCAGTGGGGGGCAAGGTGTCCAACCTGTCTCGAGGCTCCT
CGTCGAAGCAGCAGAAGACGTCGAGAAGGGTCGGAGGCGCTTCCAAGTCG
GAGCGGAGACTGCTGATGGAGGCAAAAGCTGGGGTTGGGGCTGCCATAGC
AGAGATGTCGTGGGCAGAGCCTGCCGACATGGACACGCTGAGCGATCTGC
CGCCGGTTTCTGTTCCAGTGGGGGGCAAGGTGTCCAACCTGTCTCGAGGC
TCCTCGTCGAAGCAGCAGAAGACGTCGAGAAGGGTCGGAGGCGCTTCCAA
GTCGGAGCGGAGACTGCTGATGGAGGCAAAAGCTGGGGTTGGGGCTGCCA
TAGCAGAGGACAGACAGGAGCGCCTGCTCGCGAAGCGAAGAACCCGGAAG
TGCGTGCGGTGTCTGTACTACGCCAACAAGGTGGTCGGGGTCGCGGCCTG
CGTCTTCACCTCGGGGCTCAACCTGGCCCTCGTCTACATGGGGCCGGACT
TCCGACGACAGACAGGAGCGCCTGCTCGCGAAGCGAAGAACCCGGAAGTG
CGTGCGGTGTCTGTACTACGCCAACAAGGTGGTCGGGGTCGCGGCCTGCG
TCTTCACCTCGGGGCTCAACCTGGCCCTCGTCTACATGGGGCCGGACTTC
CGACTCCACAACAGGCTCGTGCGGTCGTACCTCGTGTCGTTCGGCGTTGG
GGGCGTGCTCGCGGAGCTGGACACGCCCTTCGCCAAGGCTAACTTTCGGG
CGCTCCAGAAGTGGTGGTTCAAGGCTCCGTTTTACGTCTTTCCACAACAG
GCTCGTGCGGTCGTACCTCGTGTCGTTCGGCGTTGGGGGCGTGCTCGCGG
AGCTGGACACGCCCTTCGCCAAGGCTAACTTTCGGGCGCTCCAGAAGTGG
TGGTTCAAGGCTCCGTTTTACGTCTTCATGGCCTGGCTGTGCTTCGACCC
CGCACACTCCCGAGGAACCGTGTGGTTCTACCTCGAGCTCGCGTCGTTCG
TAGCCCTCCAGGCGATGGCGGTGATGGCGGTCGTGCTCAACGTGTGCCTG
AGGGAGGTGCTCGAGAGGAGCGGGGCCCTCGGAAAGCGGCGTGGCAAGAG
GTCGGCGGCGTCTAGGCGTCGGCGGCGAGGCGGGGCTGGATCGTCGGCTT
CGTCCCGGCATGGCCTGGCTGTGCTTCGACCCCGCACACTCCCGAGGAAC
CGTGTGGTTCTACCTCGAGCTCGCGTCGTTCGTAGCCCTCCAGGCGATGG
CGGTGATGGCGGTCGTGCTCAACGTGTGCCTGAGGGAGGTGCTCGAGAGG
AGCGGGGCCCTCGGAAAGCGGCGTGGCAAGAGGTCGGCGGCGTCTAGGCG
TCGGCGGCGAGGCGGGGCTGGATCGTCGGCTTCGTCCCGG
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