|
|
Homology
BLAST of mRNA_L-elsbetiae_contig8490.17509.1 vs. uniprot
Match: D8LHS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS6_ECTSI) HSP 1 Score: 312 bits (799), Expect = 3.420e-102 Identity = 197/266 (74.06%), Postives = 216/266 (81.20%), Query Frame = 3
Query: 114 HSHGGD-TCSHQHSHGNTGPANEDEDFNEFLEETHPCCQKDNESKARALKLRAALDKVDPSQIAERARKAAFSSGVATLPAGH-GGEDYPALREARASAAXXXXRGSHGVGDGGAVGIGYDGG---------KAXXXXXXXXXXXXXXLDYLLDDPEITRMAQARVEAMHADAARLQKLRSLGFGLHVEVSESEVEATSRGQFRGAGVVLHLYDADSKLGASLDLLLEARAGSYMGTRFVRCRLRPESAAASRMRVRRVPAIACFK 878
HSH GD TC+H H G +G + +EDF+EFLEETHPCCQKD+E+KARALKLR+ALDKVD SQIAERARKAAFSSG+A PA GG DYPALREARA+A XXXX S DG A G GY G + XXXXXXXXXXXXLDYLLDDPEITRMAQ RVEAMHADA RLQ LR+LGFGLH+EV ES VE SRGQFRGAGVVLHLYDADS+LGASLDLLLEA+AGSYMGTRFVRCRL PESA A+ MR+RRVPA+AC+K
Sbjct: 6 HSHCGDSTCNHDH--GTSGQVDGEEDFHEFLEETHPCCQKDSEAKARALKLRSALDKVDLSQIAERARKAAFSSGLAGPPASRSGGGDYPALREARAAAXXXXXXDSRN--DGAARGAGYGDGIVEGHNNHSRVDSXXXXXXXXXXXXLDYLLDDPEITRMAQMRVEAMHADATRLQNLRALGFGLHIEVPESGVEEASRGQFRGAGVVLHLYDADSELGASLDLLLEAKAGSYMGTRFVRCRLGPESAVAATMRIRRVPALACYK 267
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 311.6 |
| Seed ortholog evalue | 3.4e-82 |
| Seed eggNOG ortholog | 2880.D8LHS6 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E317@1,2SA6J@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | Thioredoxin-like fold |
| Ec32 ortholog | Ec-18_000290.1 |
| Exons | 6 |
| Model size | 879 |
| Cds size | 771 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816931.0090532-CDS-L-elsbetiae_contig8490:490..575 | 1622816931.0090532-CDS-L-elsbetiae_contig8490:490..575 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 491..575 - |
| 1691683921.1864977-CDS-L-elsbetiae_contig8490:490..575 | 1691683921.1864977-CDS-L-elsbetiae_contig8490:490..575 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 491..575 - |
| 1622816931.0240185-CDS-L-elsbetiae_contig8490:1461..1607 | 1622816931.0240185-CDS-L-elsbetiae_contig8490:1461..1607 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 1462..1607 - |
| 1691683921.197126-CDS-L-elsbetiae_contig8490:1461..1607 | 1691683921.197126-CDS-L-elsbetiae_contig8490:1461..1607 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 1462..1607 - |
| 1622816931.0352457-CDS-L-elsbetiae_contig8490:2498..2596 | 1622816931.0352457-CDS-L-elsbetiae_contig8490:2498..2596 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 2499..2596 - |
| 1691683921.2072115-CDS-L-elsbetiae_contig8490:2498..2596 | 1691683921.2072115-CDS-L-elsbetiae_contig8490:2498..2596 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 2499..2596 - |
| 1622816931.0447037-CDS-L-elsbetiae_contig8490:2989..3115 | 1622816931.0447037-CDS-L-elsbetiae_contig8490:2989..3115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 2990..3115 - |
| 1691683921.21917-CDS-L-elsbetiae_contig8490:2989..3115 | 1691683921.21917-CDS-L-elsbetiae_contig8490:2989..3115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 2990..3115 - |
| 1622816931.0573065-CDS-L-elsbetiae_contig8490:3507..3680 | 1622816931.0573065-CDS-L-elsbetiae_contig8490:3507..3680 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 3508..3680 - |
| 1691683921.2283626-CDS-L-elsbetiae_contig8490:3507..3680 | 1691683921.2283626-CDS-L-elsbetiae_contig8490:3507..3680 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 3508..3680 - |
| 1622816931.0717025-CDS-L-elsbetiae_contig8490:4091..4234 | 1622816931.0717025-CDS-L-elsbetiae_contig8490:4091..4234 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 4092..4234 - |
| 1691683921.2412477-CDS-L-elsbetiae_contig8490:4091..4234 | 1691683921.2412477-CDS-L-elsbetiae_contig8490:4091..4234 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8490 4092..4234 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816931.0854316-UTR-L-elsbetiae_contig8490:4234..4341 | 1622816931.0854316-UTR-L-elsbetiae_contig8490:4234..4341 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8490 4235..4341 - |
| 1691683921.2513793-UTR-L-elsbetiae_contig8490:4234..4341 | 1691683921.2513793-UTR-L-elsbetiae_contig8490:4234..4341 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8490 4235..4341 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8490.17509.1 >prot_L-elsbetiae_contig8490.17509.1 ID=prot_L-elsbetiae_contig8490.17509.1|Name=mRNA_L-elsbetiae_contig8490.17509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MSHSHGGDTCSHQHSHGNTGPANEDEDFNEFLEETHPCCQKDNESKARAL
KLRAALDKVDPSQIAERARKAAFSSGVATLPAGHGGEDYPALREARASAA
AAAARGSHGVGDGGAVGIGYDGGKAGSVDDSDASDDDDDLDYLLDDPEIT
RMAQARVEAMHADAARLQKLRSLGFGLHVEVSESEVEATSRGQFRGAGVV
LHLYDADSKLGASLDLLLEARAGSYMGTRFVRCRLRPESAAASRMRVRRV
PAIACFK back to topmRNA from alignment at L-elsbetiae_contig8490:491..4341- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8490.17509.1 ID=mRNA_L-elsbetiae_contig8490.17509.1|Name=mRNA_L-elsbetiae_contig8490.17509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3851bp|location=Sequence derived from alignment at L-elsbetiae_contig8490:491..4341- (Laminarionema elsbetiae ELsaHSoW15)
CGTTGTAGAACTTCTCAGCCCAACACTGATACCGGCTCAGCAGTCTCCAT
CAGTATCCTGGGCTTTCCTACGTCCTTGTGTGCCCCCACTTTAACACCTT
TATAGTTATGAGCCACAGCCACGGCGGGGACACCTGCAGCCATCAACACT
CCCATGGGAACACGGGCCCAGCAAATGAGGATGAAGACTTCAACGAGTTC
CTCGAAGAGACGCACCCTTGCTGCCAGAAGGACAACGAATCCAAGGCTCG
GTGGGTTATTTCGCTCCAAGTACTATAGACACACACAAGTACTGTAGTTG
CCTACAAACTGCTGTGACACAGCAGTAGGCGGCCACCGGGTAGGAGACTC
TGTGCTGTTTGCTGCCGGTTGAGAGATACCCAACCCCATGGATGCGGATG
ACACAGTGCGGTCGATACGGCCGTTTCCTTGGATCGTCGGCCCCATCCCA
CAGCCATGGCACACACGTTAAACGCTGTACCATCTGTAGCTATGTAATGT
ACGCGTTGGTGAAAACGTTCCGCCGTCGAAATGGCCATCTGATACCGACG
TATTTACAACAGCGTACCCAAAGGGCAGACCACACGCCCTGCCATCCCCA
CTCGCTCCACGCGGCACCCCTAACAAGGTTTTCCCAACACCCCTACCTGA
ACGAACCTCAGAGCGCTGAAGCTGCGCGCGGCTTTAGACAAGGTGGATCC
CAGCCAGATCGCCGAACGAGCGAGAAAAGCGGCGTTTTCGTCTGGCGTGG
CCACACTCCCGGCCGGCCATGGTGGAGAGGACTACCCTGCACTGAGGGAG
GCGAGGGCGAGCGCTGCTGCCGCTGCTGCTAGAGGTGTTTCTATTCTTCT
TGGTTGTCGTGCGCTTGGCGGTTGGTCGTGTGCATGCCCGGGTAGGCAAG
CACGCTTGAATAAACCCGCAACCAACCAATCTATGTGCATATTTATGTGT
GTGTGTTTTTCTTCATTTTTTTTTCCAACCATCATTGACATATTTATGAG
AGTTGGGGGTGTTGTTGGTTACAGAGCGGTTTAAAAACCGTGGCGTGCCC
CCGCGTAGGCAACAGAGTAAAGGGCTGTCGCTGCCGCGGCTGCCGCTGTG
GGGGGGGGGGTCAACGCGATAGCCCGGCCTTAATTAAGCGTTCGTCTTTT
TTCAAGTTTGGTGTCTGGTTTGTATGGTACTTTATATATTTATTTCATCC
CAGGGCTTGATTTTTCCCCTCTCCAGGTTCGCATGGCGTTGGTGATGGTG
GGGCCGTCGGAATCGGTTACGACGGAGGAAAAGCGGGGAGTGTCGACGAT
AGCGATGCCAGCGATGACGACGATGATTTGGACTACCTCCTCGACGACCC
GGGTGCGTCCGTTCCGTCTTGTTTGCGCCAGCCGTAGCGATGGCAAGGAG
AAGCTCGTCTGCTCTTGATTTGGGCCGCCTCTCGGAGAGGGACCATCGGG
GCCTGTTGGTTTTGTTTTCGCACCACATAGATTCCGCACCCTCAGAAAGC
GCGCCTTCTTCCTTCTTCGTCTTCCCCTCCGATGCACCCGCGTTGTGGCG
GCGACGGTGTCGCTCGCTGTGTAGATATGTGTTAAAAAAAGAAAAAAAAA
CTGCTGTGCTTCGTGCATCGTTGCGGGACCGCCATCGATGCCCACCCCCC
AACCAAGCACATCGTGTCCTGCGTCTTTCATTTTCCCGGTGGTTGACGCT
TGTGTTTGTATGCTCCTCTGGCTCGATTGCCCCCCCAAACAACAGAAATC
ACGCGCATGGCACAAGCGCGAGTGGAAGCAATGCACGCCGACGCGGCAAG
ACTGCAAAAACTCCGATCCCTGGGTTTTGGTCTTCACGTGGAGGTAGGTA
CATGCAGCAGTCGTATTTATCATTTATTTTTGCTCCCTCCCATTCTTGGC
TTATTCGTCTTCTGATCCACTGGCCCCCTTCCTCCACTACGACTAGCTAT
ACGACTCAACCGGGGTCACACAGGAGGGGGGGGGGGTGGACGCCCTCCTG
CGGTGCCTGCCTGTTCTGTTTCTATCGCGAGCAGGGTTCAGCACTCCCCA
CCCTCGTCAACAATGAAGTCGAAGTATTGTTTACTAACGAAATCGCTTTC
AATTAATATGGAGGTCTGAGAGTGCTCTCAGCAACAAGTTAGCGGGCACT
AGATATACAGCCCACAGGCGTTGAGAAATCGACATCCGAAAACTAAAATC
GAGCAGTCGTCCCTCTACCAAATTGCCGGGGGTGGGGAGCTCAGCTGCTT
GGGCCGTTGCTGCAAAGAAGCGGTTCGGGCCTCTGTGTGTCAATAGACAT
GCCACCAGCGACTAACTACGGAGAGCGGCGTTATCGCAGCTGCTACAAGC
ACAAGAGTTTGCTTGGAAGCGATTTTGGAACTTATTGTGGATGGCTACTG
TACGTAACATATCAACGTTCGGTTTTGTTTTAGTTCACGGGAAAATATGT
CTGGCATCAGTTCACTTCCAGCAGCAGTTTGCGCGAGGTGTAAATGGCAG
AGGAATCACCAATCACTCCGCTCACGCTGAAAAGAGCAAAATATCCCTCT
TGTTGACTAGACTCTGCGTGGCGGCAACGCCATCGCCATGTTCGACAGCA
TAAATTCAGTATCCATGGCTTCCACGAGCGCTTCAATCAGGGGCGCCTCG
AAAACATTCCGCTCCGTAGAAACCGCACCGTTTCCACCCCAGCTCGCATC
AAGCCCTACGCGCTTGCCGCGTACTCATCGACAGGTATCGGAGTCGGAAG
TGGAAGCCACCTCGAGGGGTCAGTTCAGAGGGGCGGGGGTGGTGCTTCAC
CTGTACGACGCGGACTCCAAGCTGGGGGCCTCTCTGGACCTGCTACTGGA
GGCCAGGGCTGGATCTTACATGGGCACAAGGTCGGCATCTGTGCAGTACA
GGAGATAGTGGTGTTGGCTGTTCCAGCCTTGTTTTACCTCACATAGCGTG
TAGAGGGGAGCAAAGGGCTCCAGATTCGATATCTGTTTCATTATTGCTTT
GCTGGCCCTTCGGGTCCATTTTATTTTTCGTGTACCTTTTCTTGGGTATA
AGTTAGCCTGTGACCACGGGAATGGACCGCATCAAGTGTTGGATCAGTAC
GGACATTGAGAGGTACTGGATGGAGAGATCGGAACGGTTTAAAAAAATAA
ACAATGAATCCAAGATGGAACCGACCCCACACTAGAGCAAGGACTCAATA
TGGGGTTCAAACAGTATTCCTATACAACAGTGACGTAATATTTGGCGAAG
CGAGCAGAAAAACAACCTAAAATATCAGAAGATGTGAAGACAACATACAT
ACACACATACAGGGGAGTGTTATCTCGTCGTGCTGCTGGATGTGTGGTTT
CTACCAGAGCGTGGGTTTTCTCGTCCTTGATGTCTGCCCCTCCTGCGCCC
ACACGTTGCCACGTTTCGGGCTCTGCGCGCCTCCCACCTGCTAGTCAGTA
CCTTGGCGTTGTGCTTTCGAGGTCTGCCATCCAGATTGTTTTGTTTCGCT
CCCCCATTGCTCTGATGGAGGTGCCTCTGCTTCGGGCCTCTCGCCCCGTT
CTCTCAAGCGGGTGTAGCTATTTTTTCGGTTGCTGTAGTTTTCGGGGAGG
CTTCAGGCCTTGTCCGCCGACCCTGTTCTTCCCTCTGTATGTATGTGTAA
GTGTATGTTGTCTTCACATTAAAAACCGTTCCGATCTCCCTGCTCAGTCT
TTTTTTCGGAGGGAGAGCGCCTCTCAGTGTTTTGTCCACGTGCTTGGGGG
GTTTTCATTTCGCCAGGTTCGTGCGCTGCCGCCTGAGGCCAGAGTCTGCC
GCGGCGTCGAGGATGAGGGTTCGACGGGTGCCTGCTATCGCGTGCTTCAA
G back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8490:491..4341- >mRNA_L-elsbetiae_contig8490.17509.1 ID=mRNA_L-elsbetiae_contig8490.17509.1|Name=mRNA_L-elsbetiae_contig8490.17509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig8490:491..4341- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCACAGCCACGGCGGGGACACCTGCAGCCATCAACACTCCCATGG
GAACACGGGCCCAGCAAATGAGGATGAAGACTTCAACGAGTTCCTCGAAG
AGACGCACCCTTGCTGCCAGAAGGACAACGAATCCAAGGCTCGATGAGCC
ACAGCCACGGCGGGGACACCTGCAGCCATCAACACTCCCATGGGAACACG
GGCCCAGCAAATGAGGATGAAGACTTCAACGAGTTCCTCGAAGAGACGCA
CCCTTGCTGCCAGAAGGACAACGAATCCAAGGCTCGAGCGCTGAAGCTGC
GCGCGGCTTTAGACAAGGTGGATCCCAGCCAGATCGCCGAACGAGCGAGA
AAAGCGGCGTTTTCGTCTGGCGTGGCCACACTCCCGGCCGGCCATGGTGG
AGAGGACTACCCTGCACTGAGGGAGGCGAGGGCGAGCGCTGCTGCCGCTG
CTGCTAGAGAGCGCTGAAGCTGCGCGCGGCTTTAGACAAGGTGGATCCCA
GCCAGATCGCCGAACGAGCGAGAAAAGCGGCGTTTTCGTCTGGCGTGGCC
ACACTCCCGGCCGGCCATGGTGGAGAGGACTACCCTGCACTGAGGGAGGC
GAGGGCGAGCGCTGCTGCCGCTGCTGCTAGAGGTTCGCATGGCGTTGGTG
ATGGTGGGGCCGTCGGAATCGGTTACGACGGAGGAAAAGCGGGGAGTGTC
GACGATAGCGATGCCAGCGATGACGACGATGATTTGGACTACCTCCTCGA
CGACCCGGGTTCGCATGGCGTTGGTGATGGTGGGGCCGTCGGAATCGGTT
ACGACGGAGGAAAAGCGGGGAGTGTCGACGATAGCGATGCCAGCGATGAC
GACGATGATTTGGACTACCTCCTCGACGACCCGGAAATCACGCGCATGGC
ACAAGCGCGAGTGGAAGCAATGCACGCCGACGCGGCAAGACTGCAAAAAC
TCCGATCCCTGGGTTTTGGTCTTCACGTGGAGAAATCACGCGCATGGCAC
AAGCGCGAGTGGAAGCAATGCACGCCGACGCGGCAAGACTGCAAAAACTC
CGATCCCTGGGTTTTGGTCTTCACGTGGAGGTATCGGAGTCGGAAGTGGA
AGCCACCTCGAGGGGTCAGTTCAGAGGGGCGGGGGTGGTGCTTCACCTGT
ACGACGCGGACTCCAAGCTGGGGGCCTCTCTGGACCTGCTACTGGAGGCC
AGGGCTGGATCTTACATGGGCACAAGGTATCGGAGTCGGAAGTGGAAGCC
ACCTCGAGGGGTCAGTTCAGAGGGGCGGGGGTGGTGCTTCACCTGTACGA
CGCGGACTCCAAGCTGGGGGCCTCTCTGGACCTGCTACTGGAGGCCAGGG
CTGGATCTTACATGGGCACAAGGTTCGTGCGCTGCCGCCTGAGGCCAGAG
TCTGCCGCGGCGTCGAGGATGAGGGTTCGACGGGTGCCTGCTATCGCGTG
CTTCAAGGTTCGTGCGCTGCCGCCTGAGGCCAGAGTCTGCCGCGGCGTCG
AGGATGAGGGTTCGACGGGTGCCTGCTATCGCGTGCTTCAAG back to top
|