mRNA_L-elsbetiae_contig8446.17455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8446.17455.1
Unique Name	mRNA_L-elsbetiae_contig8446.17455.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig8446.17455.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.240e-43
Identity = 82/127 (64.57%), Postives = 88/127 (69.29%), Query Frame = 1

Query:    1 RKTLELMSQGGLNLRDLLADPSNDSTPVEAMRAIMTRGKEHGWTTSQLFGVFLEAGSKEEHIPFDRFQAGLRLLGLAISQEDAREIFKTFDADNSGTIELSEFIRWCLDIDTMAWKAERIRRTTVGQ 381
            RKT+ELMSQGGL+L+D+L DPSNDSTPVEAMR+IM RGKEHGWTTSQLFGVFLE                                  TFD D SGTIELSEFIRWCLDIDTMAWKAER+RRTT GQ
Sbjct:   82 RKTMELMSQGGLHLKDILGDPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLE----------------------------------TFDTDGSGTIELSEFIRWCLDIDTMAWKAERVRRTTGGQ 174

[Close]

BLAST of mRNA_L-elsbetiae_contig8446.17455.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 7.490e-12
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 1

Query:   58 DPSNDSTPVEAMRAIMTRGKEHGWTTSQLFGVFLEAGSKEEHIPFDRFQAGLRLLG---LAISQEDAREIFKTFDADNSGTIELSEFIRWCLDIDTMAWKAERIRR 366
            + + D +PVE ++ ++T+ KE G +  +LF  F   G  E  +    F++ LR LG     + + +   +   FD D +GT+EL EF+ +CL I ++ W+AE+ RR
Sbjct:  103 EAAGDVSPVEKLQVLLTKAKERGMSAERLFEHFAPGG--EASVTPLMFESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARR 206

[Close]

BLAST of mRNA_L-elsbetiae_contig8446.17455.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.100e-10
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1

Query:  160 EAGSKEEHIPFDRFQAGLRLLGLAISQEDAREIFKTFDADNSGTIELSEFIRWCLDIDTMAWKAERIRRTTVG 378
            EA  ++  I    FQ GL  LG  IS E+  ++F   DA+  G+I+L+EF R+CL+I +M WKAER RR  +G
Sbjct:  289 EAMMRDRLITSASFQHGLATLGFNISTEETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILG 361

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8446.17455.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8446.17455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LCP2_ECTSI	3.240e-43	64.57	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D8LSJ9_ECTSI	7.490e-12	33.02	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D7G5R3_ECTSI	2.100e-10	45.21	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8446	contig	L-elsbetiae_contig8446:4985..8450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	148.7
Seed ortholog evalue	1.8e-33
Seed eggNOG ortholog	2880.D8LCP2
Hectar predicted targeting category	other localisation
EggNOG OGs	2E61A@1,2SCSX@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-03_002150.1
Exons	3
Model size	381
Cds size	363
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8446.17455.1	prot_L-elsbetiae_contig8446.17455.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8446 5003..8450 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816926.7934878-UTR-L-elsbetiae_contig8446:4984..5002	1622816926.7934878-UTR-L-elsbetiae_contig8446:4984..5002	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8446 4985..5002 +
1691683918.1867902-UTR-L-elsbetiae_contig8446:4984..5002	1691683918.1867902-UTR-L-elsbetiae_contig8446:4984..5002	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8446 4985..5002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816926.8091872-CDS-L-elsbetiae_contig8446:5002..5146	1622816926.8091872-CDS-L-elsbetiae_contig8446:5002..5146	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 5003..5146 +
1691683918.1973603-CDS-L-elsbetiae_contig8446:5002..5146	1691683918.1973603-CDS-L-elsbetiae_contig8446:5002..5146	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 5003..5146 +
1622816926.8208504-CDS-L-elsbetiae_contig8446:6850..6952	1622816926.8208504-CDS-L-elsbetiae_contig8446:6850..6952	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 6851..6952 +
1691683918.2081735-CDS-L-elsbetiae_contig8446:6850..6952	1691683918.2081735-CDS-L-elsbetiae_contig8446:6850..6952	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 6851..6952 +
1622816926.8335035-CDS-L-elsbetiae_contig8446:8333..8450	1622816926.8335035-CDS-L-elsbetiae_contig8446:8333..8450	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 8334..8450 +
1691683918.2257757-CDS-L-elsbetiae_contig8446:8333..8450	1691683918.2257757-CDS-L-elsbetiae_contig8446:8333..8450	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8446 8334..8450 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8446:4985..8450+
coding sequence from alignment at L-elsbetiae_contig8446:4985..8450+

protein sequence of mRNA_L-elsbetiae_contig8446.17455.1

>prot_L-elsbetiae_contig8446.17455.1 ID=prot_L-elsbetiae_contig8446.17455.1|Name=mRNA_L-elsbetiae_contig8446.17455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MSQGGLNLRDLLADPSNDSTPVEAMRAIMTRGKEHGWTTSQLFGVFLEAG
SKEEHIPFDRFQAGLRLLGLAISQEDAREIFKTFDADNSGTIELSEFIRW
CLDIDTMAWKAERIRRTTVGQ

mRNA from alignment at L-elsbetiae_contig8446:4985..8450+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8446.17455.1 ID=mRNA_L-elsbetiae_contig8446.17455.1|Name=mRNA_L-elsbetiae_contig8446.17455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3466bp|location=Sequence derived from alignment at L-elsbetiae_contig8446:4985..8450+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAAAACGCTGGAGCTGATGAGCCAGGGCGGGCTAAACCTCAGAGACCT
GCTCGCCGATCCTAGTAACGATAGCACCCCGGTAGAGGCGATGAGGGCCA
TCATGACTCGCGGGAAAGAGCACGGCTGGACCACGTCTCAGCTGTTCGGG
GTTTTCCTCGAGGTAAGGAGGCAGAATAGGGGGGGTATGTAGGGCGTGGG
GGCTCGCCTTACGGGAGGAAAATCTTAAAATCTTCGGCGCGACCACGGAT
GGATCAAAGCTCGGGCGCGCATCAGTCAGGTTTAGATAAAGATAATGTAA
GGGAAAACGTAATCACAAAAAGGAGGGCGGGGGAGGGGGTGCACGATTAT
TAGGTGGTGGCGCCCGAAAAAAAGTGTTCCGGGGGTCGTTTCCGAAGAAT
GAATTCAAACGATATGTGTGATATTCTCGACTCGGGGTGTCCTGAAAGGG
GGCGTGTGTGTTTGTGTGTGCGCGCGGGGGTTTGTTCGTAAGCTATATGC
ATATCTGCATTCAATCAAAAGTTTTTTTCTGGTTCTCTCGTGGAGTTGAT
CGTGTTTCGCCTCTCTTGTGCATTAAGAGATCTGTCGTAGGTTGGCGTCC
GGTGTTCTTAGCGCCATCAACTGGCCCGCCGCTGAAGCCGGACTACCTTA
TACGACACAAGAAAACACATCCCCTGGACCGATTTTCAAAAGCTCGGTTG
CTCCCCAACGAGTTGATTATATTTTGATGAAATCTCTCCAACGCCGCCCT
TTTCCGGGACTTGGACTCTCCTCGCTGTGGAGTACTTGAGCTTTGAAAAT
CGGTCCAAGGGTGTGTTATCTTGTGTCGTATACGGTATGCACATACTACA
CACATACATGTTCCGTAACCGGCGGAGCTTTGCCCCCGGAGGGGGAATAT
TGTTTTGGGCTGAACCAGTCCCCCCGGGGGGAAATTTGAAGAAGGAGGGG
GGCCGGGGGGGGTATTGGACCTCTACACTGGGGGGAGACATACAGGGTTA
GGGTTAGGGCATCTCCCTGGGGGGTACACCTAGGATTGGCGGTCCACAAC
ACAACAACCACACACAGAGAAAGTGCCCCACGCAAGAATAAAAATGTACT
CCGTAGTAGTGACGGCGATATATATGCCCCGATTTAAATCGCGCTCGAAG
CGCCGAGTTGAAGAAGCAGTTTTTGCCCCTATTTATTCATGCTTTGAAGT
GCCTCGCGATGCCATAAAAAAAACGACTCAAAAATAAGGAAAACGCAACC
CCCCGGGGGGAACCCGTGTTGCATGTCTTCCAGTGCCGCTGCACCCCCAA
TGGCTTGTGGCACGGCTTCTCAGCAAGCCTATTTATTGTAACGTTATTTT
ATTTTTTATTTTTTATTTTCCGCCCATCATTGGCATATTTGTCGTCTGCC
CCATCGCTGGCCCCCTTCCTCTACTGCGACTAGCTAGATGACCCAACCGG
GGTCACACAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTGCCTGCCTTAG
ATGTTTTTATGTAGGAAGGGGGCGAGAGGGAGTCGAGCCCTGAACGAATT
GTTCCAAAGCTTTTCACCCCTAGATAAGCATGGTACCTTTGAGCCGTCCG
CGGTGCACGGCGAGGAACACCCGAAAAAGGTACTCGCTGCACACAGAACA
GTGAGTTAGACTATTAAATCGCGCACTACTGTTACTTCATACTACGTACG
TATACCCGCGTTCCTTTTAGTCGGCGGACGCTCACCTTTTGGAGCCACGG
CCACTGTACATGTCGGCGCGCTGCTACATATCTAGCTGTCTCTCGTGTAG
CGAAAGCAGTAAGTTTACAGCTGTCCCGACCCCGAGCCTCCTCCTCGCCC
CTCGCGGTGGCACCAGGCGGGCAGCAAGGAAGAACACATCCCTTTCGATC
GCTTTCAGGCGGGGCTTCGTCTGCTGGGACTTGCCATCTCCCAGGAAGAC
GCACGAGAAATCTTCAAGGTATGTCCTCCGGTGTACTCCGAGTATGTTTT
ACACGCGCGTAGATATCTAGACTGTCTGTGTAGATTTTGTTTTTCTTCCC
CATACTTATTTCCAGTGCTCCATGGGTTCCTTGTCACGAGGAGGACACCT
TGCCAGAGTACTGAACCGTGGTCACATAGAACATGGGGTTCCTTTCCCCA
AGACCCCCACTCCCCCCGTCTCCGGTGCTCGCCTAATATATTTAAAAAAT
AAACAATGAATCAAAGATGAACCTAACCCGCACTAGAGAGCAAGGACTCG
ATATGGGGTTCAAACGGTATTCCATACAGTGACGTAATATTTGGCGAGGC
GAGCAGGAAAGCAAACCTAAAACATCAGAAGAGTTCAAAATCTCCCCCTG
CAAAGATTTGCGAGGTCGGCCAACAAGTATTCCGGCTGGTAGATGCGCGC
CGTGATGCCGTAATGCTGTCATCTGCTTCAAAATAGGAACTTTTTGTCGC
GAAAGATACATAGTCTACATACTATACAATTTTCTATTTATGCACGGAGT
TCGATAATTATTCAGGTACATGCATAGATAGCTATATATATAGCAATTTG
TTTTTTACAATATGTACATACTATTGCACGGAGATGATGATGGCGGTTGA
GCGGCCGTACACAACAGAAGAGCGCTCCCAAAGCAATCGCCGGAAGAGGC
TGACGGTGAGCGAGGAAAAAGGAAAACGCGTTCGCCTCTAGATAGATGGA
AGGCGTAACGTCTGTTGTTGTGAATCCGGGTCAGGTTTTTTGGTATGGAA
GTATGATGCATGGAGAAGTATATAAAAGGAGGGGTGGGCTGGGGGTCTTA
GGGTAGCGATAATGCCGAACGAGGGGGGTGCGTCATTGGGGGCCCTGTCT
CGTTGGGGGTGCACGTCGCGCTGAACATTTTTGCGAGGGTGGCATGACGG
CCAGCGTCTATCTGATTAGATAGATATATACTTCCAAGCATGCATCTATG
AATGCATCTAGTATGAGGGACGGTTAGTGGTGCGGTGATTGGTTTGCTTC
CTGTAATAGAGTCACCATTTCTCAAAAAGAGCTGTGGGGGCAGCGGGGGG
GGTTGTTGTTGGGATTTATCTCTAGAAAATAGAGTGAAATATACTTTTTT
TGGAATTGGGGGACTGCAGAAAACCTATAGCATTTCGCTAAATTGTAAGC
CTTCATTCCGCAGCAAGGCTCTCGACTGGGGCATGCATGGTGCACGGCAG
CGGTCATGGCAGGGTCGAAACCAGACTGTGTAGCTGGGCTTGACCCGCCG
CCTCTTGAACTGCTGCCGCGGTCTTGCCCCTACACAATAATACACTATTG
TCGCGCCCAACAGTAAAGTACCTTTTCTTGATGCATTGTATTGGCGCAGA
CGTTCGATGCGGACAACAGCGGCACGATTGAGCTGTCCGAGTTTATCCGA
TGGTGCCTCGACATTGACACCATGGCATGGAAGGCGGAGCGTATTCGAAG
GACGACGGTAGGACAA

Coding sequence (CDS) from alignment at L-elsbetiae_contig8446:4985..8450+

>mRNA_L-elsbetiae_contig8446.17455.1 ID=mRNA_L-elsbetiae_contig8446.17455.1|Name=mRNA_L-elsbetiae_contig8446.17455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8446:4985..8450+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCAGGGCGGGCTAAACCTCAGAGACCTGCTCGCCGATCCTAGTAA
CGATAGCACCCCGGTAGAGGCGATGAGGGCCATCATGACTCGCGGGAAAG
AGCACGGCTGGACCACGTCTCAGCTGTTCGGGGTTTTCCTCGAGATGAGC
CAGGGCGGGCTAAACCTCAGAGACCTGCTCGCCGATCCTAGTAACGATAG
CACCCCGGTAGAGGCGATGAGGGCCATCATGACTCGCGGGAAAGAGCACG
GCTGGACCACGTCTCAGCTGTTCGGGGTTTTCCTCGAGGCGGGCAGCAAG
GAAGAACACATCCCTTTCGATCGCTTTCAGGCGGGGCTTCGTCTGCTGGG
ACTTGCCATCTCCCAGGAAGACGCACGAGAAATCTTCAAGGCGGGCAGCA
AGGAAGAACACATCCCTTTCGATCGCTTTCAGGCGGGGCTTCGTCTGCTG
GGACTTGCCATCTCCCAGGAAGACGCACGAGAAATCTTCAAGACGTTCGA
TGCGGACAACAGCGGCACGATTGAGCTGTCCGAGTTTATCCGATGGTGCC
TCGACATTGACACCATGGCATGGAAGGCGGAGCGTATTCGAAGGACGACG
GTAGGACAAACGTTCGATGCGGACAACAGCGGCACGATTGAGCTGTCCGA
GTTTATCCGATGGTGCCTCGACATTGACACCATGGCATGGAAGGCGGAGC
GTATTCGAAGGACGACGGTAGGACAA