mRNA_L-elsbetiae_contig8444.17454.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8444.17454.1
Unique NamemRNA_L-elsbetiae_contig8444.17454.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8444.17454.1 vs. uniprot
Match: A0A6H5KFU5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.890e-13
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 MLGMLQATFQRVRHSCWQTGARLCDPDNPDNSGCGCXXXXXXXXXXXXXXXXXXXTSINS-----CGSRRAGLCCSWLSSLLFGWDWIPLPTS 264
            MLGM+Q+ F R RH+C +TGARLC  ++  + G G XXXXXXXXXXXXXXXXXXX          C SRRAG CCSWLSSLL GWDW+P+ TS
Sbjct:    1 MLGMIQSVFARTRHACRRTGARLCGRNSECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRSRRAGPCCSWLSSLLLGWDWLPIATS 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8444.17454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFU5_9PHAE3.890e-1363.44RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8444contigL-elsbetiae_contig8444:3389..8174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8444.17454.1prot_L-elsbetiae_contig8444.17454.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8444 3389..8174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816926.7382436-CDS-L-elsbetiae_contig8444:3388..34771622816926.7382436-CDS-L-elsbetiae_contig8444:3388..3477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 3389..3477 -
1691683918.1576905-CDS-L-elsbetiae_contig8444:3388..34771691683918.1576905-CDS-L-elsbetiae_contig8444:3388..3477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 3389..3477 -
1622816926.7502832-CDS-L-elsbetiae_contig8444:4342..45461622816926.7502832-CDS-L-elsbetiae_contig8444:4342..4546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 4343..4546 -
1691683918.1665282-CDS-L-elsbetiae_contig8444:4342..45461691683918.1665282-CDS-L-elsbetiae_contig8444:4342..4546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 4343..4546 -
1622816926.7627277-CDS-L-elsbetiae_contig8444:8116..81741622816926.7627277-CDS-L-elsbetiae_contig8444:8116..8174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 8117..8174 -
1691683918.1782036-CDS-L-elsbetiae_contig8444:8116..81741691683918.1782036-CDS-L-elsbetiae_contig8444:8116..8174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8444 8117..8174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8444.17454.1

>prot_L-elsbetiae_contig8444.17454.1 ID=prot_L-elsbetiae_contig8444.17454.1|Name=mRNA_L-elsbetiae_contig8444.17454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MLGMLQATFQRVRHSCWQTGARLCDPDNPDNSGCGCCCGRSSANGGGSGG
GGGGTTSINSCGSRRAGLCCSWLSSLLFGWDWIPLPTSEGTAGAGGGGGP
APESHRHGSGSLGVSSR
back to top

mRNA from alignment at L-elsbetiae_contig8444:3389..8174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8444.17454.1 ID=mRNA_L-elsbetiae_contig8444.17454.1|Name=mRNA_L-elsbetiae_contig8444.17454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4786bp|location=Sequence derived from alignment at L-elsbetiae_contig8444:3389..8174- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGGCATGCTCCAGGCGACGTTTCAGAGGGTCAGACACTCGTGCTG
GCAGACAGGTAAGGCTTTCCCCGTGTGACTGAGCACTCGTACAATAATGT
AGTTCAACAGACAAAAACCTGCAGCAGATTGGGGTATGGTAACGTACACA
AAATATGCAGTTGTCGCGAGGCCGGCGAGATGAGATGACGTTGGCGCCCA
CCAAGCCCATCACGTGAATGGCCACCCACCCCCGCCTATACATGTGTTCT
ACAGCTTGAGCCCAGCGGTACAGCAACTCCGTGCCTGCCTCTGTATTGAT
CAACTCAGTGATTCCGCAACGAACCGCGGTATGGCATGGCATGGAAAAAG
ATCCGCACGCCCCCGCGCTCTCTCTGTCTCTACTCGTCAACCTGCTACAT
GGGTTTACTAGCCCCCACCTTCTGTTCAGCGGGCCGTACCGCTGTCGAAT
AGGCAGGTCGGAATCGCATGCCTCCGTTCAATTTCACCCATCCCAGAGCA
GCGGCAAATGTATGCTTGTTGTGTGCATCGCGAACAGTAGTTGTAGTATT
TACAGAGTTCAAGAGTGGACCCTCTCATGTGTGTGAAAAGCCAGTCGAAA
AAGAAAGAGGTTCTCTCTCAGATTATCTCTCAGATTATCTCTCAGATTAT
CTCTCCGCTCGCCATGAAAGCCACCGCAAAGCTCAGGCCTACGCTGAAAG
CTGAGGGCGGGGGGCGGCTGAGTCGTAAGCCCGGCGCTCAGCGCGGGCGA
CCTGTCCCAGTTTCAGTATTCGTTATTCGCAACACACGCACAACGGATAC
ATGCTGTCCCAACCGTACATGTATGTTCTGGGGGTGTAGCAACACTAATA
GACGTCGTTTCATAGGTAGCCAGCGCACGTCACGCACGGTCGATGGTGTT
CCCCCCGCTTAGGAAGAGGACGTAATGCTTGTTGAAGCGGTTTGCTGCAT
CCGTTTGTGTTTTTCAAGCTCGTCGCCCCATCCATCCTCCCTGCGCTGAC
GAGCGGAAACCTGTCGGGGTAACATAATCCCGACATTGCGTCTTTCGTCT
CGAAGTCGACCCTCCCCCCCCCCCGGGCTGGAGGTGTTTGTTGTTTTGTT
CGTGAAAAAACACACTTTTCCCACATCCCCACGGAGTCCCGGGTCTACTA
TGTACGTAATGCGGGCTAGGGTCCATTATTGATTCGCTGATTCCTATTAA
ACCCCCCGGGAAGAAGAAAGCTCGGAGAAATCAAGCCTCTAGGCCGAACA
AGGTGGCGGGGGCTCGAAACCCCGGGGGGGACTTAGAGCGGATTACGGCG
TAAACACACAGCTGCACGGGGTATAAAAATATACTTAGTAGGAGTATATG
GTACTTACTAGAACAAAAAAAAGGAGCGGCATCTGCCATCCGTCTATCTG
CTTTATTCCGCCCATGTATGTATGTATCCACGTATACGTATGTAGCTCTC
TCGGTCGGTCGTTGCATGCCGGCTTCCTTCGTTGGGCATCACACCCGGGC
TCTTCTTCTCCGCCACCTTATTTCTTCGTACCTACACATACATGCATTGA
TTGTTGTTCTTGTCTTTTACGTTCAAAGTTGTTCCGATCTATCGTTCCAT
CTGTCCGTTGTAATCAAAATGCTTGACGCGGTCGATTCCCGTGGCCACAG
GCTAACTTGACTTACGTACTACCTTCTAAAGCCGCGTTCAGAGCTTTTTT
TTTCCAAATTTCCAATATCCATTTTTCCAAACTTCCAAAAGCCACCACGT
AGGGGGTGTGGGTAGTTTTCAAAACACGAAAAAAAGCCTTCGCACGGGTA
CCATGGGGCGACGCTCGAGTAGCGGGGGTTACCAAAATCGTGTTTTGAAA
ATTACCCACACCCCCTACGTGGTGGCTTTTGGAAGTTTGGAAAAACGGAT
ATTGGAAATTGGGGAAAAAAAACTCTGAACGCGGCTTAAAAAGTTCAACT
CCGTACCTACTATTTACTGAGAAACAAAAGTCAACCCGGAGGGCCAGCAA
GGCACAAAAGCAAATGATCAGTCCGGAGCCCTCCGCTTCCCTCTTCGCGC
TTTGTTGGGTGACAAACAAGACTGAAAAAGCCAAAATCATAGCTACAAAA
TCACCGACCGGGGGGGGGATACACCTCCTGGTTTTATCTTGGTATGTACC
CCACCAAAGCCGGGGTGTTCCGAGTCGGGTTCTCGCCGGTCAGGCCCGCC
AAATATAATCCTCCGCACCGGTTAACCGCACACTAATGTAGCCAATAATT
ACAGCACTCGCAGACTGCGTGTTTTTGTTCATGTAGATACGTAAATATGT
TACATATTGGGACGTGGTTGCCGGGGGCTGCGTGCTGCTATTTGTCTGGC
AAGGTTTTTTTTTGTCATCCACTCTGTCCTCCCGACGGATGGTTCCCAGT
GCAGCTTCTCTTGCTTAAGTCTGGTCGCTCGATCCGATTCACACACACAC
ACACACACACACACATCCGGCTGCATTGTTGGCCAAGAGTTACGTTCCAT
GTACCAAACGCCTCAGTTGGTTTCCACGTTCTTCACCAACCAATCCTTGT
ACACCGGCACCGAAGAGTTTCGGACAGTTTCAGATGATTTTGGCGGTTTC
TATCAGCGAAGGGGTGGTAGGTAGGCTTAGCCTCCGTTTTGTGGGCGATT
CCCGAAATTGCGCAGGAACTAAATCTGTTACTTATACTGGATTTAGTGTA
AACGAAAAAGGTGTATAACTGGTAGGTAGAACAGAAAAAAACGTCTTTGT
GTATGCTACATATAGAGGGGCGGAACATTAACATTTGTATCGAACATCTA
TCTTGCGCGGACCAGTTCCTTTCCTTGTTTAAAAAATAAAAAAACAATGA
ATCAAAGATGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTTC
AAACAGTATTCCATACAGTGACGTAATATTTGGCGAAGCGAGCAGCAAAA
CAAACCTAAAACATCAGAAGAGTTCAACATCTCCCCTGCAAAGATTTGCG
AGGTCGGCCAACAAGTATTTCAGGCGGGTAGATGCCCGCCGGTGATGCTG
TAATGTTGTCATCTACTTCAAAATAGGAACACATCGCATTGTTGAACTAA
ATCAAAATGCTGGTTTTATATAATGTGAGTTACTGCTTTTGAAGAGAACA
TACAATATTAAAGGTATGTAGACCATTTGCTTTACTTTTTATTTGTATTT
TCTAATAGTATTGGTGGAGGTAAGACTCCGTCTGGTGCGGGGGGCGCTGA
TGTATTGGCTACCCCGCTGAAAAACATAGACTAGAAGCAAGAATGTATGG
GCTTGGTTTGATGCCGGGCAGAGCCGTTTTCAGCAAAGCCTGCCGTTCTT
CCCCCGCGCGAAACCCCTACCCGCTCTTCCGTACACGGTCAATTGTTCAA
GCCATTATGGGGGCACAGCAGTAGTGACTCGGGAAGGTTCACCCCGCCGG
CAACCTCCATGCGTGTCTTCCGCGCCCCTTGATGCGACCGGCTCTCTCCG
CAAGCAGAGGCACCCCGCCCCTTCCCCCTATGTGATGAGAGAAGTATCCA
ATATCACACCTTCCGATGTTGTGCGTTGCCAGTTGTTTTCCAATTAATAA
ACCAACATGAAATAACCAATTGACGCAGGTGCCCGGCTCTGCGACCCAGA
CAACCCCGACAACTCCGGCTGTGGATGCTGCTGCGGGAGATCCAGTGCCA
ACGGTGGCGGCAGCGGCGGCGGAGGTGGCGGCACCACCAGCATCAACAGC
TGCGGCAGCCGCCGCGCGGGGCTGTGCTGCTCCTGGCTGTCTTCGCTTCT
CTTCGGCTGGGACTGGATCCCGCTGCCCACATGTGAGGATTTGAGGACGC
GGTGCAATGGTTAGTTCCGCCTCTTAAGACAGGTTGACTGTTGAAGCGAA
CCCGCCGCATCGTTGACACGCGTATTGTACATAATGTACATCTGGACCAC
TATTCGCCGTTGAGCGGACCACAAACGCTCGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGCGACGCGTTTCGAAAAATCGTATCATTTAGCTAT
AGGGGGGGAGGTGGGTTACACGGCAGGAGGCTTGTTCCTGGCACCATGTT
CGCCCGAATGATATGAGGGTCCGAAATGAGTCGCCTCAAGTTATACGTAC
CACGGGCGCCTCGCCGGACTGTTTTTGAGAAGGGGACCCTCGGATCGCAG
AGAAGACACCCCGTTACCCTCGATTTTAGGTTTGTCGATGTCTCGAGGCT
CGAGGCTGGCTGGTGTGCCCTCCCCCCTCTCTCTGCAAACCGGGAGGCCC
CCTGCCTGTTTTTTTAGGGGCTCCGCGCTTGTTGCTCCACGGCGATAAGA
GTGGGCGCTGCCGTGGGCGCGTGCCTTTACTCCGTTCTTGGACTTGTGCC
AACAACCCTGTGCCGAAGACTGGTTGGATGCGTCGGGCCCTTACTGTTGT
AGTAACAGCGCCCCCCCCCCCCTGACTCCCTGCCCTCCCCCCCCTCCGTT
TCTCACAGAGCACCCCCCCTCTCGCAGAGCAGACTACGATTCTCACTCAC
GTTTGAATAGCTGGCCTAACTGTCTCATCTCTCTATCTCTCTCCCTCTCT
TTCTGTGTGTGTCTTCGATTATCTGTCTTTCTCTGTGTCTGTTTTATTCA
TCTCTCTCTCGCTCTTCGGCTGTGTTGTGTTTGGGAACACAATACAGCCG
AAGGTACAGCCGGGGCGGGAGGCGGCGGAGGGCCCGCGCCGGAGAGCCAC
CGGCACGGGAGCGGCTCCCTAGGGGTTTCCAGTAGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8444:3389..8174-

>mRNA_L-elsbetiae_contig8444.17454.1 ID=mRNA_L-elsbetiae_contig8444.17454.1|Name=mRNA_L-elsbetiae_contig8444.17454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig8444:3389..8174- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGGCATGCTCCAGGCGACGTTTCAGAGGGTCAGACACTCGTGCTG
GCAGACAGATGTTGGGCATGCTCCAGGCGACGTTTCAGAGGGTCAGACAC
TCGTGCTGGCAGACAGGTGCCCGGCTCTGCGACCCAGACAACCCCGACAA
CTCCGGCTGTGGATGCTGCTGCGGGAGATCCAGTGCCAACGGTGGCGGCA
GCGGCGGCGGAGGTGGCGGCACCACCAGCATCAACAGCTGCGGCAGCCGC
CGCGCGGGGCTGTGCTGCTCCTGGCTGTCTTCGCTTCTCTTCGGCTGGGA
CTGGATCCCGCTGCCCACATGTGCCCGGCTCTGCGACCCAGACAACCCCG
ACAACTCCGGCTGTGGATGCTGCTGCGGGAGATCCAGTGCCAACGGTGGC
GGCAGCGGCGGCGGAGGTGGCGGCACCACCAGCATCAACAGCTGCGGCAG
CCGCCGCGCGGGGCTGTGCTGCTCCTGGCTGTCTTCGCTTCTCTTCGGCT
GGGACTGGATCCCGCTGCCCACATCCGAAGGTACAGCCGGGGCGGGAGGC
GGCGGAGGGCCCGCGCCGGAGAGCCACCGGCACGGGAGCGGCTCCCTAGG
GGTTTCCAGTAGACCGAAGGTACAGCCGGGGCGGGAGGCGGCGGAGGGCC
CGCGCCGGAGAGCCACCGGCACGGGAGCGGCTCCCTAGGGGTTTCCAGTA
GA
back to top