mRNA_L-elsbetiae_contig844.17448.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig844.17448.1 vs. uniprot
Match: D8LT81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT81_ECTSI) HSP 1 Score: 610 bits (1572), Expect = 3.110e-194 Identity = 438/785 (55.80%), Postives = 495/785 (63.06%), Query Frame = 3
Query: 672 PPPEAXXXXXPRPRVVTSKYKGLDLIAQADLAERRAREREEARLRAGYPLVALAKERQAVADLRAALTKAVCAVLELCQQQPQAETLTSTGDGDGSATMSGLPE----GNTWWEGDDPRVKATRGPPSTLVQMVCSGEDANVRCGTSEYRLSTG-TAASRCSTAVGYGGSSVLG-----GKAAADRRNISNARTKSKVAAGGRNFP------------QSP------SPSRE--GAEPGPGRS-KLQDIAKTVAESGTMARTLLSGLLATGAGGSGAGPELSSWTRPPPTAIVTPPTNPREALSVARAATADLKSFSNEIKVDVGADG----ETTGCQIP---PHGAPGNNYGSGTSWRAQTAAFTAGAGAPIHENRGETEEVDTTASTRIANALRGDILWAESLPDFVRKAMETQEGDFGQQVALKEREIVLLTETQQELKRDLRTFKADYVSADAEDVIRALRKRQRRLNNQVRYLERQLEFAQQSSEVEGGAIEVLEGILRKRDTDKQLCHSLGLKSLEIGLKIRMLETDAGGKTVEVSRMSRKEQRAVTHLKGRLVKERGITDARKKTVAAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLLEWGRITAARLESTTAA-GSRCGLGGEADTSDNNTRGILHASCGSGGVGAARDTADVVPLTRGATAAPRAGGGVNHDRRTDGARRPGVQQPGSAAGVGSMGNHRASSTAYLGSPGFRPTDHRFGGGIWASSV-ATASIASG--SASTASLPGRLSSTNAPSRDTPAAQKESFFLPKK 2900
PP P+PR + K KGLDLIAQADLAER REREEARLRAGYPL +LA ERQAVADLRAALTK VC VLELCQ QP+ G +WWE DPR KA RGPPSTLVQMVCSGEDA VRC TSEY+LSTG AASRCSTAV Y G + G++ D SN K A+G R P Q+P + +RE G+ G S K +D+AKTV+ESGTMART+LSG T + G L T PP PPTNPREALS ARAATA ++SFS IKVDVG G E ++P GA QTAA T G G VDT+AS RI NALR D LWAESLPDF+ K ME Q+G FG+QVALKEREIV+LTE Q+ELKRDLR FKADY SADAEDVIRALRKRQR LN+QVRYLERQLE AQQSS VEGGAIEVLEG+LR+RDTDKQL H LGLKSLEIGLKI +LETDAG KTVEVSRM +KEQ+AV HLKGRLVKERGI DAR+KTV AELERSLPHGMRAFERVSRTIQRLCNGYTSLPGL+EWGR+TAARLE+TT A G R GLGG+ S G G A TA+ P G DRR+ R Q P S AG+ + A S+A+ G F G AS+ A +S+ SG +ASTASLPGR +T PS + + ++ + + PKK
Sbjct: 628 PPQPKHPPTTPQPRAI-KKAKGLDLIAQADLAERLEREREEARLRAGYPLASLALERQAVADLRAALTKTVCVVLELCQHQPEPXXXXXXXXXXXXXXXXXXXXXXXGGPSWWE-RDPRAKAARGPPSTLVQMVCSGEDAGVRCATSEYKLSTGMAAASRCSTAVSYCGGGLSNVIMDDGRSNGDTAAASNHNDKPAAASGQRFEPPPLLLMPQPQXXQTPLEAEATTETRETSGSTTSSGSSSKFRDMAKTVSESGTMARTILSGF--TKSQRKPKGELLVPPTEEPPV-FQGPPTNPREALSAARAATAGVRSFSAGIKVDVGGRGNGGTEAEAGRMPWASGGGAXXXXXXXXXXXXXQTAAPT---GXXXXXXSGGAGVVDTSASARIVNALREDTLWAESLPDFISKTMEAQKGGFGRQVALKEREIVILTEEQRELKRDLRNFKADYYSADAEDVIRALRKRQRGLNDQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGSKTVEVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGGD-------------GSWGGRVDGTAIATANHRPAYGGXXXXX-----XRRDRRSVNDRVAEGQGPWSVAGLCDSRDFAAPSSAHFDGAGSLSERGVFDFGARASATTAASSLWSGPSTASTASLPGRPRNTMFPS-SSHSTKETTHYFPKK 1385
BLAST of mRNA_L-elsbetiae_contig844.17448.1 vs. uniprot
Match: A0A6H5KEZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ1_9PHAE) HSP 1 Score: 590 bits (1522), Expect = 2.480e-193 Identity = 388/648 (59.88%), Postives = 434/648 (66.98%), Query Frame = 3
Query: 702 PRPRVVTSKYKGLDLIAQADLAERRAREREEARLRAGYPLVALAKERQAVADLRAALTKAVCAVLELCQQQPQAETLTSTGD-----GDGSATMSGLPEGNTWWEGDDPRVKATRGPPSTLVQMVCSGEDANVRCGTSEYRLSTGTAA-SRCSTAVGYGGSSVLG-----GKAAADRRNISNARTKSKVAAGGRNFPQ------SPSPSREGAEPGPG---------------RSKLQDIAKTVAESGTMARTLLSGLLATGAGGSGAGPELSSWTRPPPTAIVTPPTNPREALSVARAATADLKSFSNEIKVDVGADG----ETTGCQIP---PHGAPGNNYGSGTSWRAQTAAFTAGAGAPIHENRGETEEVDTTASTRIANALRGDILWAESLPDFVRKAMETQEGDFGQQVALKEREIVLLTETQQELKRDLRTFKADYVSADAEDVIRALRKRQRRLNNQVRYLERQLEFAQQSSEVEGGAIEVLEGILRKRDTDKQLCHSLGLKSLEIGLKIRMLETDAGGKTVEV----------------------SRMSRKEQRAVTHLKGRLVKERGITDARKKTVAAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLLEWGRITAARLESTTAA-GSRCGLGGE 2459
P+PR + K KGLDLIAQADLAERR REREEARLRAGYPL +LA ERQAVADLR ALTK VC VLELCQ QP++ G+ ++ +G P +WWE DPR KA RGPPSTLVQMVCSGEDA+VRC TSEY+LSTGTAA SRCSTAV Y G + G++ D SN K A G R P P P + E G RSK +++A TVAESGTMART+LSG T G L T P PPTNPREALS ARAAT ++SFS IKVDV G E ++P GA SG+ W AQTAA T GA + G VD +AS RI NALR D LWA+SLP+F+RK ME Q+G F +QVALKEREIV+LTE Q++LKRDLR KADY SAD EDVIRALRKRQR LN QVRYLERQLE AQQSS VEGGAIEVLEG+L +RDTDKQL H LGLKSLEIGLKI +LETDAGGKTVEV SRM +KEQ+AV HLKGRLVKERGI DAR+KTV AELERSLPHGMRAFERVSRTIQRLCNGYTSLPGL+EWGR+TAARL++TT A G R GLGG+
Sbjct: 35 PQPRAI-KKAKGLDLIAQADLAERREREREEARLRAGYPLASLALERQAVADLREALTKTVCVVLELCQHQPESPAAXXXXXXXXXAGEEASPTTGRP---SWWE-RDPRAKAARGPPSTLVQMVCSGEDADVRCATSEYKLSTGTAAASRCSTAVSYCGGGLSNVIMDDGRSNGDTAAASNHNDKPAAAVGQRFEPPPLLLVPQPQPQQIPLEAGATKETSEISGCTTSSGTRSKFREMATTVAESGTMARTILSGF--TNPRQKPKGELLIPPTAESPV-FQGPPTNPREALSAARAATLRVRSFSAGIKVDVSGRGHGGTEEEAGRMPWASGGGAXXXXXXSGSGWGAQTAAPTGGASTG---DGGGAGVVDMSASARIVNALREDTLWAKSLPEFIRKTMEAQKGGFDRQVALKEREIVILTEEQRDLKRDLRNVKADYYSADTEDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLHQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEVGGPFERRQWRHAETIRFSRRFVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLDTTTTAVGDRRGLGGD 671 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig844.17448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig844.17448.1 >prot_L-elsbetiae_contig844.17448.1 ID=prot_L-elsbetiae_contig844.17448.1|Name=mRNA_L-elsbetiae_contig844.17448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=960bp MPSPAQDDAAEEARRQLQVQLTMSIATLRRAKEELREEKQRSERAENQLRback to top mRNA from alignment at L-elsbetiae_contig844:6094..11798+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig844.17448.1 ID=mRNA_L-elsbetiae_contig844.17448.1|Name=mRNA_L-elsbetiae_contig844.17448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5705bp|location=Sequence derived from alignment at L-elsbetiae_contig844:6094..11798+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig844:6094..11798+ >mRNA_L-elsbetiae_contig844.17448.1 ID=mRNA_L-elsbetiae_contig844.17448.1|Name=mRNA_L-elsbetiae_contig844.17448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5760bp|location=Sequence derived from alignment at L-elsbetiae_contig844:6094..11798+ (Laminarionema elsbetiae ELsaHSoW15)back to top |