mRNA_L-elsbetiae_contig843.17439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig843.17439.1
Unique NamemRNA_L-elsbetiae_contig843.17439.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: D8LMF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF5_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.550e-51
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVT 252
            VPRLN VFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHP+ERKALGIV GEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVT
Sbjct:   46 VPRLNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVT 129          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A835ZAA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.440e-34
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGV 249
            +P+LN V LTG LGQDP  +YFD G+ V+ LSLAVKREYH +ERKA+GI YGEEETDWFQLE+W+R+AEYA KV  KG RVG+
Sbjct:   84 IPKLNAVLLTGRLGQDPVARYFDDGKCVVQLSLAVKREYHALERKAMGIRYGEEETDWFQLELWSREAEYAMKVAAKGLRVGI 166          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7R9W4H7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4H7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.330e-33
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +PRLN V L+G +G DP+P+YFD G+VVLNLSLAV+R+YHP+ERK   I YGEEETDWF LE+W RDAE+A+    KG R+G+T S
Sbjct:  104 IPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLAVQRKYHPLERKVRNIKYGEEETDWFPLELWGRDAEFASNFVDKGARIGITGS 189          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7S1YYF7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYF7_TRICV)

HSP 1 Score: 123 bits (309), Expect = 3.610e-33
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +PRLN V L+G +G DP+P+YFD G+VVLNLSLA KR+YHP+ERK   I YGEEETDW+ LEMW RDAE+ +K   KG R+G+T S
Sbjct:  107 IPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLACKRKYHPLERKVRNIKYGEEETDWWPLEMWGRDAEFVSKYVNKGARIGITGS 192          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7S4R517_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R517_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.080e-32
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +P+LN V L+G +G  P+P+YFD G+VVLN+ LAVKR+YHP+ERK   I YG+EETDWF LE+W RDAE+AA+   KG R+G+T S
Sbjct:  113 IPKLNVVTLSGRVGNVPEPRYFDDGKVVLNMGLAVKRKYHPLERKVKNIQYGQEETDWFNLELWGRDAEFAARFVDKGSRIGITGS 198          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7S1ZHN3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHN3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.760e-31
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +P+LN V L+G +G  P+P+YFD G+VVLN+ LAVKR+YHP+ERK   I YG+EETDWF LE+W RDAE+AA+   KG R+G+T S
Sbjct:  113 IPKLNVVTLSGRVGNVPEPRYFDDGKVVLNMGLAVKRKYHPLERKVKNIQYGQEETDWFNLELWGRDAEFAARFVDKGSRIGITGS 198          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: B8C9K7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9K7_THAPS)

HSP 1 Score: 115 bits (287), Expect = 3.350e-31
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +P+LN V L G +G  P PKYFD G+VVLNLS+AVKR+YHP+ERK   I  GEEETDWF LE W RDAEY     +KG R+G+T S
Sbjct:   10 LPKLNVVTLVGRVGGTPDPKYFDDGKVVLNLSVAVKRKYHPLERKVRNIRSGEEETDWFPLEFWGRDAEYVTNYVEKGARIGITGS 95          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: K0SQT6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQT6_THAOC)

HSP 1 Score: 117 bits (293), Expect = 5.890e-31
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +P+LN+V L G +G +P+PKYFD G+VVLNLSLA KR+YHP+ERK   I  GEEETDWF LE+W RDAEY A    KG R+G+T S
Sbjct:   77 LPKLNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIKSGEEETDWFALEIWGRDAEYVANYVDKGARMGITGS 162          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7S2SIA7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SIA7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.210e-31
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVT 252
            +PR+N+V L G +GQDP PKY D G+VVLNLSLAVKR+YHP+ER    I  GEEETDWF LE+W RDAEYA+K   KG R+ VT
Sbjct:  107 IPRVNSVTLVGRVGQDPDPKYLDDGKVVLNLSLAVKRKYHPLERNVRNIKSGEEETDWFPLEIWGRDAEYASKYVDKGSRMMVT 190          
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Match: A0A7S2USN2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USN2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.140e-29
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 VPRLNTVFLTGYLGQDP-KPKYFDSGRVVLNLSLAVKREYHPIERKALGIVYGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS 258
            +P+ N V L+G +G    +PKYFD G+VVL+LSLAVKR+YHP+ER+A  I  G+EETDWF LE+W RDAEYAAK  +KG R+GVT S
Sbjct:   40 IPKFNVVTLSGRVGNPQLEPKYFDDGKVVLSLSLAVKRKYHPLERRAYNIKSGDEETDWFALEIWGRDAEYAAKYVEKGSRIGVTGS 126          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig843.17439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF5_ECTSI4.550e-5196.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAA6_9STRA2.440e-3469.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9W4H7_9STRA3.330e-3363.95Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1YYF7_TRICV3.610e-3363.95Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4R517_9STRA5.080e-3260.47Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1ZHN3_9STRA1.760e-3160.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8C9K7_THAPS3.350e-3161.63Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0SQT6_THAOC5.890e-3162.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2SIA7_9STRA7.210e-3165.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2USN2_9STRA1.140e-2962.07Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig843contigL-elsbetiae_contig843:2196..2875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue2.9e-41
Seed eggNOG ortholog2880.D8LMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Single-strand binding protein family
EggNOG OGs2S5G6@2759,COG0629@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPrimosome PriB/single-strand DNA-binding
Ec32 orthologEc-05_002550.1
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816925.272367-CDS-L-elsbetiae_contig843:2195..23241622816925.272367-CDS-L-elsbetiae_contig843:2195..2324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig843 2196..2324 +
1691683916.8819392-CDS-L-elsbetiae_contig843:2195..23241691683916.8819392-CDS-L-elsbetiae_contig843:2195..2324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig843 2196..2324 +
1622816925.2831113-CDS-L-elsbetiae_contig843:2743..28751622816925.2831113-CDS-L-elsbetiae_contig843:2743..2875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig843 2744..2875 +
1691683916.8973289-CDS-L-elsbetiae_contig843:2743..28751691683916.8973289-CDS-L-elsbetiae_contig843:2743..2875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig843 2744..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig843.17439.1prot_L-elsbetiae_contig843.17439.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig843 2196..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig843.17439.1

>prot_L-elsbetiae_contig843.17439.1 ID=prot_L-elsbetiae_contig843.17439.1|Name=mRNA_L-elsbetiae_contig843.17439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
VPRLNTVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPIERKALGIV
YGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTVS*
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mRNA from alignment at L-elsbetiae_contig843:2196..2875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig843.17439.1 ID=mRNA_L-elsbetiae_contig843.17439.1|Name=mRNA_L-elsbetiae_contig843.17439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=680bp|location=Sequence derived from alignment at L-elsbetiae_contig843:2196..2875+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGCGGCTGAACACGGTCTTCCTGACGGGATACCTCGGCCAGGACCC GAAGCCCAAGTATTTCGACAGCGGAAGAGTCGTGCTCAATCTCAGCTTGG CGGTGAAGCGAGAGTACCATCCGATCGAGGTGCTGCAGCAGCGAGCAGTG TACCGTTGGATAGGTAGATAGCCCGGGTTGGGGCGAACAAAGCAGCGACG TGCCTGACACGTGACGACCATCGCGCTCTCGATCGCCGGAGAAGTCTGTA GCGCACAAGCAGTATGTCGCCCGCGAAAAGGGCAGTACATAGAGAGGGGC CGCTGGACAGCGCTGCTACGACAGTAGCGCAACGGTGGGCCAGACCACGT ATTGGTCACTCGCACTGCCAGTTGTTGCGTGTGGTATACGTTCGGCGGGC ACGTGATCGTGTGTGTGTGGCGCCAGAAACTGCCGAGTGCAGGCCAGCTG TGTGTGTCAATCTATCGAAGGTCAGCTCTTGTGTGCCGGTTCTAACCTAT TGAGTCGCCCCCCCCAAACATGATGAAACAACGTGATGAAACGATCAGCG CAAGGCCTTGGGTATCGTTTACGGGGAAGAGGAGACGGACTGGTTCCAGC TGGAGATGTGGAACCGCGACGCGGAGTACGCCGCCAAGGTCTGCAAGAAG GGCGGCCGGGTTGGTGTTACGGTGAGTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig843:2196..2875+

>mRNA_L-elsbetiae_contig843.17439.1 ID=mRNA_L-elsbetiae_contig843.17439.1|Name=mRNA_L-elsbetiae_contig843.17439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig843:2196..2875+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGCGGCTGAACACGGTCTTCCTGACGGGATACCTCGGCCAGGACCC
GAAGCCCAAGTATTTCGACAGCGGAAGAGTCGTGCTCAATCTCAGCTTGG
CGGTGAAGCGAGAGTACCATCCGATCGAGGTTCCGCGGCTGAACACGGTC
TTCCTGACGGGATACCTCGGCCAGGACCCGAAGCCCAAGTATTTCGACAG
CGGAAGAGTCGTGCTCAATCTCAGCTTGGCGGTGAAGCGAGAGTACCATC
CGATCGAGCGCAAGGCCTTGGGTATCGTTTACGGGGAAGAGGAGACGGAC
TGGTTCCAGCTGGAGATGTGGAACCGCGACGCGGAGTACGCCGCCAAGGT
CTGCAAGAAGGGCGGCCGGGTTGGTGTTACGGTGAGTTAGCGCAAGGCCT
TGGGTATCGTTTACGGGGAAGAGGAGACGGACTGGTTCCAGCTGGAGATG
TGGAACCGCGACGCGGAGTACGCCGCCAAGGTCTGCAAGAAGGGCGGCCG
GGTTGGTGTTACGGTGAGTTAG
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